mRNA_M-pyrifera_M_contig121743.4464.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121743.4464.1
Unique NamemRNA_M-pyrifera_M_contig121743.4464.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121743.4464.1 vs. uniprot
Match: A0A351XF30_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351XF30_9ACTN)

HSP 1 Score: 119 bits (299), Expect = 1.080e-33
Identity = 57/79 (72.15%), Postives = 67/79 (84.81%), Query Frame = 1
Query:    1 TFEEAEADLREVAGAKGWTEEVIEMIKGVLIYGDADTVGERLKACMDMGIDGMTINLPANGHNPDRVALLGEVGLAATA 237
            T EEAE+DLREV  AKGW++E+IEM K +LIYGD DTVGE+L+ACMD GIDGMTINL ANGH  +R+ LLGE+ LAATA
Sbjct:    7 TMEEAESDLREVGAAKGWSDEIIEMAKMILIYGDPDTVGEKLQACMDTGIDGMTINLAANGHKIERIGLLGEIALAATA 85          
BLAST of mRNA_M-pyrifera_M_contig121743.4464.1 vs. uniprot
Match: A0A7Y1ZTP5_9ACTN (LLM class F420-dependent oxidoreductase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y1ZTP5_9ACTN)

HSP 1 Score: 126 bits (316), Expect = 1.380e-33
Identity = 56/80 (70.00%), Postives = 70/80 (87.50%), Query Frame = 1
Query:    1 TFEEAEADLREVAGAKGWTEEVIEMIKGVLIYGDADTVGERLKACMDMGIDGMTINLPANGHNPDRVALLGEVGLAATAG 240
            T EEAEAD+RE+A AKGW +EV+EM+KG+L++GD DTVGE++ ACM  G+DG+T NLPANGHN DR+ LLGE+GLAATAG
Sbjct:  243 TMEEAEADVREIAAAKGWPDEVVEMVKGILVFGDPDTVGEQVAACMATGVDGITFNLPANGHNTDRIGLLGEIGLAATAG 322          
BLAST of mRNA_M-pyrifera_M_contig121743.4464.1 vs. uniprot
Match: A0A3D5K343_9ACTN (LLM class F420-dependent oxidoreductase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3D5K343_9ACTN)

HSP 1 Score: 122 bits (306), Expect = 4.210e-32
Identity = 58/79 (73.42%), Postives = 69/79 (87.34%), Query Frame = 1
Query:    1 TFEEAEADLREVAGAKGWTEEVIEMIKGVLIYGDADTVGERLKACMDMGIDGMTINLPANGHNPDRVALLGEVGLAATA 237
            T EEAE+DLRE+  AKGW++EVIEM K +LIYGD+DTVGE+L+ACMD GIDGMTI LPANGH  +R+ LLGE+GLAATA
Sbjct:  243 TMEEAESDLREIGAAKGWSDEVIEMAKMILIYGDSDTVGEKLQACMDTGIDGMTICLPANGHKIERIGLLGEIGLAATA 321          
BLAST of mRNA_M-pyrifera_M_contig121743.4464.1 vs. uniprot
Match: A0A2E6ZV84_9BACT (LLM class F420-dependent oxidoreductase n=4 Tax=Bacteria TaxID=2 RepID=A0A2E6ZV84_9BACT)

HSP 1 Score: 119 bits (299), Expect = 4.490e-31
Identity = 58/79 (73.42%), Postives = 67/79 (84.81%), Query Frame = 1
Query:    1 TFEEAEADLREVAGAKGWTEEVIEMIKGVLIYGDADTVGERLKACMDMGIDGMTINLPANGHNPDRVALLGEVGLAATA 237
            T EEAE DLREVA AKGW+EEV EM K +LI+GDADTVGE+L+ACMD GIDGMTINL ANGH  +R+ LLGE+ LAAT+
Sbjct:  243 TMEEAETDLREVAAAKGWSEEVTEMAKMILIFGDADTVGEKLQACMDTGIDGMTINLAANGHKLERIGLLGEIALAATS 321          
BLAST of mRNA_M-pyrifera_M_contig121743.4464.1 vs. uniprot
Match: A0A3C2DGT2_9ACTN (LLM class F420-dependent oxidoreductase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2DGT2_9ACTN)

HSP 1 Score: 114 bits (285), Expect = 5.360e-29
Identity = 55/79 (69.62%), Postives = 66/79 (83.54%), Query Frame = 1
Query:    1 TFEEAEADLREVAGAKGWTEEVIEMIKGVLIYGDADTVGERLKACMDMGIDGMTINLPANGHNPDRVALLGEVGLAATA 237
            T EEAE+DLRE+A  KGW+EEVIEM K VL++GD DTVGE+L+ACMD GIDGMTINL ANG+  +R+ LLGE+ L ATA
Sbjct:  243 TMEEAESDLREMAAVKGWSEEVIEMAKMVLVFGDPDTVGEKLQACMDTGIDGMTINLAANGYKLERIGLLGEIALEATA 321          
BLAST of mRNA_M-pyrifera_M_contig121743.4464.1 vs. uniprot
Match: A0A2D6FSP0_9ACTN (LLM class F420-dependent oxidoreductase n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6FSP0_9ACTN)

HSP 1 Score: 111 bits (278), Expect = 5.870e-28
Identity = 52/77 (67.53%), Postives = 63/77 (81.82%), Query Frame = 1
Query:    1 TFEEAEADLREVAGAKGWTEEVIEMIKGVLIYGDADTVGERLKACMDMGIDGMTINLPANGHNPDRVALLGEVGLAA 231
            T EEAE DLRE+A  KGW++E+IEM K +LI+GD DTVGE+L+ACMD GIDGMTINLPANGH  +R+ LLGE+   A
Sbjct:  243 TMEEAEEDLREIAQTKGWSDEIIEMAKMILIFGDPDTVGEQLQACMDTGIDGMTINLPANGHKLERIGLLGEIASVA 319          
BLAST of mRNA_M-pyrifera_M_contig121743.4464.1 vs. uniprot
Match: A0A3M2GT20_ACTSX (Uncharacterized protein (Fragment) n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GT20_ACTSX)

HSP 1 Score: 96.7 bits (239), Expect = 1.080e-24
Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 1
Query:   22 DLREVAGAKGWTEEVIEMIKGVLIYGDADTVGERLKACMDMGIDGMTINLPANGHNPDRVALLGEVGLAA 231
            DLRE+A  KGW +E +E+++ V I GD DTVGERL A M MG+DG+TINLPANGH  +R+ALLGEV  AA
Sbjct:    1 DLREMAATKGWPDEALELVRSVAIVGDPDTVGERLSAIMAMGVDGLTINLPANGHKTERIALLGEVAGAA 70          
BLAST of mRNA_M-pyrifera_M_contig121743.4464.1 vs. uniprot
Match: A0A7K1DST9_9ACTN (TIGR03560 family F420-dependent LLM class oxidoreductase n=3 Tax=root TaxID=1 RepID=A0A7K1DST9_9ACTN)

HSP 1 Score: 100 bits (250), Expect = 7.050e-24
Identity = 46/77 (59.74%), Postives = 62/77 (80.52%), Query Frame = 1
Query:    1 TFEEAEADLREVAGAKGWTEEVIEMIKGVLIYGDADTVGERLKACMDMGIDGMTINLPANGHNPDRVALLGEVGLAA 231
            T EEA+AD++ ++GAK WT+EV++M+  +LI+GD DTVGE+L+  M  GIDG+TINLP NGHN DR+ LLG+V  AA
Sbjct:  241 TMEEAQADVKALSGAKNWTDEVMQMLPHMLIFGDPDTVGEKLQELMSTGIDGLTINLPVNGHNTDRIGLLGQVANAA 317          
BLAST of mRNA_M-pyrifera_M_contig121743.4464.1 vs. uniprot
Match: A0A7C8DMK5_9DELT (LLM class F420-dependent oxidoreductase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C8DMK5_9DELT)

HSP 1 Score: 99.8 bits (247), Expect = 1.960e-23
Identity = 43/77 (55.84%), Postives = 60/77 (77.92%), Query Frame = 1
Query:    1 TFEEAEADLREVAGAKGWTEEVIEMIKGVLIYGDADTVGERLKACMDMGIDGMTINLPANGHNPDRVALLGEVGLAA 231
            T EEAEADL  +A  KGW + +++MI+  LI+GDADTVGER+   + MG+DG+T++LP NGHNP+R+ LLG++ L A
Sbjct:  242 TMEEAEADLAAIATVKGWNDAIMDMIRKALIFGDADTVGERISEAVSMGLDGITVDLPVNGHNPERIELLGQISLKA 318          
BLAST of mRNA_M-pyrifera_M_contig121743.4464.1 vs. uniprot
Match: A0A6L6DYX1_9ACTN (TIGR03560 family F420-dependent LLM class oxidoreductase n=2 Tax=root TaxID=1 RepID=A0A6L6DYX1_9ACTN)

HSP 1 Score: 99.0 bits (245), Expect = 3.790e-23
Identity = 43/73 (58.90%), Postives = 59/73 (80.82%), Query Frame = 1
Query:    1 TFEEAEADLREVAGAKGWTEEVIEMIKGVLIYGDADTVGERLKACMDMGIDGMTINLPANGHNPDRVALLGEV 219
            T EEA ADL+ +AG KGW +EV++M+  + ++GD DTVGE+L+  M+ GIDG+TIN+P NGHN DR+ALLG+V
Sbjct:  241 TMEEAHADLKALAGVKGWNDEVMQMLPQMFVFGDPDTVGEKLQELMNTGIDGLTINMPVNGHNTDRIALLGQV 313          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121743.4464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A351XF30_9ACTN1.080e-3372.15Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7Y1ZTP5_9ACTN1.380e-3370.00LLM class F420-dependent oxidoreductase n=1 Tax=Il... [more]
A0A3D5K343_9ACTN4.210e-3273.42LLM class F420-dependent oxidoreductase n=2 Tax=Ac... [more]
A0A2E6ZV84_9BACT4.490e-3173.42LLM class F420-dependent oxidoreductase n=4 Tax=Ba... [more]
A0A3C2DGT2_9ACTN5.360e-2969.62LLM class F420-dependent oxidoreductase n=1 Tax=Ac... [more]
A0A2D6FSP0_9ACTN5.870e-2867.53LLM class F420-dependent oxidoreductase n=3 Tax=Ac... [more]
A0A3M2GT20_ACTSX1.080e-2464.29Uncharacterized protein (Fragment) n=1 Tax=Actinom... [more]
A0A7K1DST9_9ACTN7.050e-2459.74TIGR03560 family F420-dependent LLM class oxidored... [more]
A0A7C8DMK5_9DELT1.960e-2355.84LLM class F420-dependent oxidoreductase n=1 Tax=My... [more]
A0A6L6DYX1_9ACTN3.790e-2358.90TIGR03560 family F420-dependent LLM class oxidored... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121743contigM-pyrifera_M_contig121743:289..531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size243
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815736.4934895-CDS-M-pyrifera_M_contig121743:288..5311622815736.4934895-CDS-M-pyrifera_M_contig121743:288..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121743 289..531 -
1692277545.3586967-CDS-M-pyrifera_M_contig121743:288..5311692277545.3586967-CDS-M-pyrifera_M_contig121743:288..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121743 289..531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121743.4464.1prot_M-pyrifera_M_contig121743.4464.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121743 289..531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121743.4464.1

>prot_M-pyrifera_M_contig121743.4464.1 ID=prot_M-pyrifera_M_contig121743.4464.1|Name=mRNA_M-pyrifera_M_contig121743.4464.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
TFEEAEADLREVAGAKGWTEEVIEMIKGVLIYGDADTVGERLKACMDMGI
DGMTINLPANGHNPDRVALLGEVGLAATAG*
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mRNA from alignment at M-pyrifera_M_contig121743:289..531-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121743.4464.1 ID=mRNA_M-pyrifera_M_contig121743.4464.1|Name=mRNA_M-pyrifera_M_contig121743.4464.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=243bp|location=Sequence derived from alignment at M-pyrifera_M_contig121743:289..531- (Macrocystis pyrifera P11B4 male)
ACCTTCGAGGAGGCCGAGGCCGACCTGCGTGAAGTGGCGGGCGCCAAGGG ATGGACCGAGGAGGTCATCGAGATGATCAAGGGCGTTCTCATCTACGGCG ATGCCGACACCGTCGGCGAACGGCTCAAGGCCTGCATGGACATGGGCATC GACGGGATGACCATCAATCTGCCGGCGAACGGCCACAACCCCGACCGTGT CGCGCTCCTCGGCGAGGTCGGCCTGGCAGCAACCGCCGGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121743:289..531-

>mRNA_M-pyrifera_M_contig121743.4464.1 ID=mRNA_M-pyrifera_M_contig121743.4464.1|Name=mRNA_M-pyrifera_M_contig121743.4464.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig121743:289..531- (Macrocystis pyrifera P11B4 male)
ACCTTCGAGGAGGCCGAGGCCGACCTGCGTGAAGTGGCGGGCGCCAAGGG
ATGGACCGAGGAGGTCATCGAGATGATCAAGGGCGTTCTCATCTACGGCG
ATGCCGACACCGTCGGCGAACGGCTCAAGGCCTGCATGGACATGGGCATC
GACGGGATGACCATCAATCTGCCGGCGAACGGCCACAACCCCGACCGTGT
CGCGCTCCTCGGCGAGGTCGGCCTGGCAGCAACCGCCGGCTGAACCTTCG
AGGAGGCCGAGGCCGACCTGCGTGAAGTGGCGGGCGCCAAGGGATGGACC
GAGGAGGTCATCGAGATGATCAAGGGCGTTCTCATCTACGGCGATGCCGA
CACCGTCGGCGAACGGCTCAAGGCCTGCATGGACATGGGCATCGACGGGA
TGACCATCAATCTGCCGGCGAACGGCCACAACCCCGACCGTGTCGCGCTC
CTCGGCGAGGTCGGCCTGGCAGCAACCGCCGGCTGA
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