mRNA_M-pyrifera_M_contig12171.4461.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12171.4461.1
Unique NamemRNA_M-pyrifera_M_contig12171.4461.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig12171.4461.1 vs. uniprot
Match: D7FJC7_ECTSI (Rab5, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJC7_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 5.470e-62
Identity = 98/102 (96.08%), Postives = 99/102 (97.06%), Query Frame = 1 
Query:    1 ESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQFEEAHQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEKKSGCC 306
            ESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQ EEA  YAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTE+KSGCC
Sbjct:   94 ESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARLYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEQKSGCC 195
[Close]
BLAST of mRNA_M-pyrifera_M_contig12171.4461.1 vs. uniprot
Match: A0A835Z7I1_9STRA (Rab5, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7I1_9STRA)

HSP 1 Score: 172 bits (437), Expect = 7.030e-53
Identity = 85/102 (83.33%), Postives = 93/102 (91.18%), Query Frame = 1 
Query:    1 ESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQFEEAHQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEKKSGCC 306
            +SFNGAKSWVKELQRRGDPNV+IALAGNKADLE RRQV FEEAH YAE+NG+IHMETSAKSA NVKSIFVEIA++LPKA  QPEREAFPIM PR +KK+G C
Sbjct:   92 DSFNGAKSWVKELQRRGDPNVVIALAGNKADLEGRRQVHFEEAHAYAEENGIIHMETSAKSALNVKSIFVEIAKRLPKAGAQPEREAFPIMPPRRDKKAGGC 193
[Close]
BLAST of mRNA_M-pyrifera_M_contig12171.4461.1 vs. uniprot
Match: A0A484DXE7_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DXE7_BRELC)

HSP 1 Score: 159 bits (402), Expect = 3.430e-48
Identity = 77/103 (74.76%), Postives = 90/103 (87.38%), Query Frame = 1 
Query:    1 ESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQFEEAHQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEK-KSGCC 306
            +SF GAKSWVKELQRRGDPNV+IALAGNKADLE RR+V++EEAHQYAEDN ++HMETSAK+A NVK +FV IA++LPK  +QPEREAFPI  P+  K KSGCC
Sbjct:   45 DSFTGAKSWVKELQRRGDPNVVIALAGNKADLEARRKVEYEEAHQYAEDNDILHMETSAKTAVNVKDLFVAIAKRLPKNPIQPEREAFPITPPQASKSKSGCC 147
[Close]
BLAST of mRNA_M-pyrifera_M_contig12171.4461.1 vs. uniprot
Match: A0A7S0CFN9_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CFN9_9STRA)

HSP 1 Score: 157 bits (397), Expect = 8.260e-48
Identity = 74/101 (73.27%), Postives = 91/101 (90.10%), Query Frame = 1 
Query:    1 ESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQFEEAHQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEKKSGC 303
            +SF GAKSWVKELQRRGDPNV+IALAGNKADL+ RR+V+FEEA+ YAE+NG++H+ETSAK++ NVKS+FVEIAQKLPK   QPEREAFP+M P+ EK++ C
Sbjct:   19 DSFAGAKSWVKELQRRGDPNVVIALAGNKADLDSRRKVEFEEANAYAEENGILHLETSAKNSNNVKSLFVEIAQKLPKNPPQPEREAFPLMAPKQEKRACC 119
[Close]
BLAST of mRNA_M-pyrifera_M_contig12171.4461.1 vs. uniprot
Match: A0A662WWK7_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WWK7_9STRA)

HSP 1 Score: 158 bits (399), Expect = 2.060e-47
Identity = 78/103 (75.73%), Postives = 89/103 (86.41%), Query Frame = 1 
Query:    1 ESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQFEEAHQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEK-KSGCC 306
            +SF GAKSWVKELQRRGDPNV+IALAGNKADLE RR+V+FEEAHQYAEDN ++HMETSAK+A NVK +FV IA++LPK   QPEREAFPI  P+  K KSGCC
Sbjct:   69 DSFTGAKSWVKELQRRGDPNVVIALAGNKADLEARRKVEFEEAHQYAEDNDILHMETSAKTAVNVKDLFVAIAKRLPKNPPQPEREAFPITPPQAAKSKSGCC 171
[Close]
BLAST of mRNA_M-pyrifera_M_contig12171.4461.1 vs. uniprot
Match: A0A6U2XTP3_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U2XTP3_9STRA)

HSP 1 Score: 158 bits (399), Expect = 4.960e-47
Identity = 76/102 (74.51%), Postives = 92/102 (90.20%), Query Frame = 1 
Query:    1 ESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQFEEAHQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEKKSGCC 306
            +SF GAKSWVKELQRRGDPNV+IALAGNKADLE RR+V+FEEA+ YA +NGL+H+ETSAK+A NVKS+FVEIA+KLPK   +PEREAFPI+ P+T++KS CC
Sbjct:  100 DSFTGAKSWVKELQRRGDPNVVIALAGNKADLESRRKVEFEEANAYATENGLLHLETSAKNANNVKSLFVEIAKKLPKQEPEPEREAFPIL-PQTQEKSNCC 200
[Close]
BLAST of mRNA_M-pyrifera_M_contig12171.4461.1 vs. uniprot
Match: A0A5D6XMY9_9STRA (Uncharacterized protein n=23 Tax=Oomycota TaxID=4762 RepID=A0A5D6XMY9_9STRA)

HSP 1 Score: 157 bits (398), Expect = 6.630e-47
Identity = 78/104 (75.00%), Postives = 89/104 (85.58%), Query Frame = 1 
Query:    1 ESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQFEEAHQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEK--KSGCC 306
            +SF GAKSWVKELQRRGDPNV+IALAGNKADLE RR+V+FEEAHQYAEDN ++HMETSAK+A NVK +FV IA++LPK   QPEREAFPI  P  +K  KSGCC
Sbjct:   95 DSFTGAKSWVKELQRRGDPNVVIALAGNKADLEARRKVEFEEAHQYAEDNDILHMETSAKTAVNVKDLFVAIAKRLPKNPHQPEREAFPITPPTNQKQNKSGCC 198
[Close]
BLAST of mRNA_M-pyrifera_M_contig12171.4461.1 vs. uniprot
Match: M4B2C3_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B2C3_HYAAE)

HSP 1 Score: 162 bits (409), Expect = 7.870e-47
Identity = 79/103 (76.70%), Postives = 91/103 (88.35%), Query Frame = 1 
Query:    1 ESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQFEEAHQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEK-KSGCC 306
            ESF+GAKSWVKELQRRGDPNV+IALAGNKADLE RR+V+FEEAHQYAEDN ++HMETSAK+A NVK +FV IA++LPK  +QPEREAFPI  P+  K KSGCC
Sbjct:  244 ESFSGAKSWVKELQRRGDPNVVIALAGNKADLEARRKVEFEEAHQYAEDNDILHMETSAKTAVNVKDLFVAIAKRLPKNPIQPEREAFPITPPQASKSKSGCC 346
[Close]
BLAST of mRNA_M-pyrifera_M_contig12171.4461.1 vs. uniprot
Match: A0A0W8DMJ6_PHYNI (Intraflagellar Transport protein 80 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DMJ6_PHYNI)

HSP 1 Score: 158 bits (400), Expect = 1.610e-46
Identity = 78/103 (75.73%), Postives = 89/103 (86.41%), Query Frame = 1 
Query:    1 ESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQFEEAHQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEK-KSGCC 306
            +SF GAKSWVKELQRRGDPNV+IALAGNKADLE RR+V+FEEAHQYAEDN ++HMETSAK+A NVK +FV IA++LPK   QPEREAFPI  P+  K KSGCC
Sbjct:  151 DSFTGAKSWVKELQRRGDPNVVIALAGNKADLEARRKVEFEEAHQYAEDNDILHMETSAKTAVNVKDLFVAIAKRLPKNPPQPEREAFPITPPQASKSKSGCC 253
[Close]
BLAST of mRNA_M-pyrifera_M_contig12171.4461.1 vs. uniprot
Match: A0A7S1ZIQ9_TRICV (Hypothetical protein n=3 Tax=Mediophyceae TaxID=589449 RepID=A0A7S1ZIQ9_TRICV)

HSP 1 Score: 156 bits (394), Expect = 8.080e-46
Identity = 74/101 (73.27%), Postives = 90/101 (89.11%), Query Frame = 1 
Query:    1 ESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQFEEAHQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEKKSGC 303
            +SF GAKSWVKELQRRGDPNV+IALAGNKADLE RR+V+FEEA+ YAE+NG++H+ETSAK+A NVK++FVEIA+KLPK   QPEREAFPI+ P+ E +S C
Sbjct:  136 DSFAGAKSWVKELQRRGDPNVVIALAGNKADLESRRKVEFEEANAYAEENGILHLETSAKNASNVKALFVEIAKKLPKTPPQPEREAFPIVTPKQENRSCC 236
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12171.4461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJC7_ECTSI5.470e-6296.08Rab5, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z7I1_9STRA7.030e-5383.33Rab5, rab family GTPase n=1 Tax=Tribonema minus Ta... [more]
A0A484DXE7_BRELC3.430e-4874.76Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A7S0CFN9_9STRA8.260e-4873.27Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A662WWK7_9STRA2.060e-4775.73Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A6U2XTP3_9STRA4.960e-4774.51Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A5D6XMY9_9STRA6.630e-4775.00Uncharacterized protein n=23 Tax=Oomycota TaxID=47... [more]
M4B2C3_HYAAE7.870e-4776.70Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A0W8DMJ6_PHYNI1.610e-4675.73Intraflagellar Transport protein 80 n=1 Tax=Phytop... [more]
A0A7S1ZIQ9_TRICV8.080e-4673.27Hypothetical protein n=3 Tax=Mediophyceae TaxID=58... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12171contigM-pyrifera_M_contig12171:174..5542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.4
Seed ortholog evalue6.4e-48
Seed eggNOG ortholog2880.D7FJC7
Preferred nameVPS21
KEGG koko:K07889,ko:K17785
KEGG Pathwayko04014,ko04144,ko04145,ko04962,ko05146,ko05152,map04014,map04144,map04145,map04962,map05146,map05152
Hectar predicted targeting categoryother localisation
GOsGO:0000011,GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005768,GO:0005769,GO:0005770,GO:0005886,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006897,GO:0006906,GO:0006914,GO:0006996,GO:0007032,GO:0007033,GO:0007034,GO:0007154,GO:0007165,GO:0007264,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0010008,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016462,GO:0016482,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019867,GO:0022411,GO:0022607,GO:0023052,GO:0030139,GO:0031090,GO:0031410,GO:0031901,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031982,GO:0032386,GO:0032509,GO:0032511,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032880,GO:0033036,GO:0033157,GO:0033365,GO:0034058,GO:0034613,GO:0035556,GO:0035639,GO:0036010,GO:0036094,GO:0036257,GO:0036258,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044429,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0048284,GO:0048308,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051179,GO:0051223,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060341,GO:0061024,GO:0061025,GO:0061709,GO:0061912,GO:0061919,GO:0065007,GO:0070201,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0090087,GO:0090174,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098657,GO:0098805,GO:1901265,GO:1901363,GO:1903008,GO:1903827
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0092@1,KOG0092@2759
Ec32 ortholog descriptionRab5, RAB family GTPase
Ec32 orthologEc-14_005840.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04031,ko04131,ko04147
Exons3
Model size309
Cds size309
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12171.4461.1prot_M-pyrifera_M_contig12171.4461.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12171 174..5542 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815736.3462248-CDS-M-pyrifera_M_contig12171:173..2801622815736.3462248-CDS-M-pyrifera_M_contig12171:173..280Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12171 174..280 +
1692277545.2850335-CDS-M-pyrifera_M_contig12171:173..2801692277545.2850335-CDS-M-pyrifera_M_contig12171:173..280Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12171 174..280 +
1622815736.3570023-CDS-M-pyrifera_M_contig12171:3978..40881622815736.3570023-CDS-M-pyrifera_M_contig12171:3978..4088Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12171 3979..4088 +
1692277545.297773-CDS-M-pyrifera_M_contig12171:3978..40881692277545.297773-CDS-M-pyrifera_M_contig12171:3978..4088Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12171 3979..4088 +
1622815736.366814-CDS-M-pyrifera_M_contig12171:5450..55421622815736.366814-CDS-M-pyrifera_M_contig12171:5450..5542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12171 5451..5542 +
1692277545.309097-CDS-M-pyrifera_M_contig12171:5450..55421692277545.309097-CDS-M-pyrifera_M_contig12171:5450..5542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12171 5451..5542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12171.4461.1

>prot_M-pyrifera_M_contig12171.4461.1 ID=prot_M-pyrifera_M_contig12171.4461.1|Name=mRNA_M-pyrifera_M_contig12171.4461.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
ESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQFEEAHQYAEDN
GLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEKKSG
CC*
back to top

mRNA from alignment at M-pyrifera_M_contig12171:174..5542+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12171.4461.1 ID=mRNA_M-pyrifera_M_contig12171.4461.1|Name=mRNA_M-pyrifera_M_contig12171.4461.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5369bp|location=Sequence derived from alignment at M-pyrifera_M_contig12171:174..5542+ (Macrocystis pyrifera P11B4 male)
GAGTCGTTCAACGGTGCCAAGTCGTGGGTGAAGGAGCTGCAGCGCAGAGG
AGACCCGAACGTGATTATCGCGCTAGCAGGGAACAAGGCGGACCTCGAAC
ACCGCCGGTAAGCGCTTGGGTGCTTTGGTAGTGAACTTGCGGGTACTATA
ATTCGTAAGCTCTTAGGAATATAGGGTATGGGGTGGGGGAAATTATTTAA
TGGATGACTTGAGTTGTCCGTTATGGTGTGAGTTATTATTCCCTAGGTTT
ATCCTAGGGTATCCATGGCGGAAACTCCTAACCTGTCTGTCTGACCCCTA
CCAACCGAAAGCTCCAAACTATGGTTTTTTTCCTCCCCCGAGCGGCTCCC
GACGTTGAGGCGCATACCGCACGCAGCGGGAATCGATAGCCGACACACAT
ACAAGCAGTGTGGGCCAATTTTCGGCTTCAACGGCGCCCTGTGCTTCGAG
CTACGCGACCCACCCGAACACCCCTCGTACTCTCAATCACAACGAATATT
ACCATCACACTGCTGCTGCCTGCTGCTGGTGGTGGTGCTGCTGTACGAGC
ATCGTTTGCAATTCGCCCACAAATCATCGCAGCGAAAATCGATACCTGAC
ATAGATAAAAGTAGTCTGTGCCATTTTCTGGCTTCTCCAGAGCCCTGTGC
CTCGAGCTAGACGACCCCCCGAAACCCCTCGCACACGCACACCGCAGCTT
GGCCGATGGGCGTTGTTGTAAATTATGTGGCGTTATTGAGAGGGTGCTTC
CAACGCTACTATAAATCCAGGTACATACGATGAGAGGACCTACGTACGTA
CAACAATCGTACATGTCGATACGAGCATCGCTCGCAAATGGTCCACAGGT
CATCGATCGGACCAAGTGGGGGTTCTTACCGTGGAGAGTTCTGCTGCCCA
ACGGGATTGTTGCACCCCCTCGTTGAGGTCGTAGCCCTCCGCTTGCAGCG
GATCCCGCAACGTGCATCTACCAACGGGCGTTGTGGTACATTCGGTGGCG
TTATTTGTAAGGAGGGTGGTACGAACGCTGTTTGATGCCTCTTCATTAAG
CGGTGCAAATCTCACGGCCAGCCGAGAGGACAGCAGTAAGCACGTGCTTC
AGCTGTCGATTTTCGCCTACACCACCACGACGCACCGACCGTCTCTGCTG
TTGGAGATATTTTTGTCGCCACCATTGAGATTGTACCTGGTACGAGCTAC
CTGGATTTGTCGAACGCTGTTTGATGCTGCTGCATTAAGCGGTGCAAATC
TCACGGCCAGCCGAGAGGACAGCAGTAAGTACGTGCTTCTGCTGTCGATT
TTCGCCTACACCACCACGACGCTCCGACCGTCTCTGCTGTTGGAGATATT
TTTGTCGCCACTATTGAGATTGTACCTGGTACGAGCTACCTGGATTTGTC
GGTTGTTACCGATCGCGTTCTAACTTTCTTTGTGTGTGATAGATGCTGGA
CTGCTGCTGCTACAAGCAGCAGCGAAAGCAGCAGCAGCAGCAGTGGGATT
TTCCGCAGCCGGCCGTGATGGCAGCAGCTAGTACGAGTACGTCCTTGTTG
TTGCCATCGATTGCGATTGCCTACACCTCGCACTCTGCTGTGTATGTTGC
TGCGCAAAGCAGCGCTGTTGTCGGCGGTATCCCGTAAAAAAAAAAAATGG
ATCGAAAAGCTCGTAATCATCTCATTGGCTAACATATTGGACCCAATAAT
AGCTCCGGCGCAGTCCTCCGCGGACAAATGACAGGGCAGTGGCGGTAGTA
GTATTGTAGCGGTAACATATTCCGGCTTTCGTTATTTACCTCTGCGCCAC
ACGCCGTGTATATCTTGTGCTGTGAAACGCTTCAGCCCCGGTATGTGCCC
GGATCTAAGCCACTGTGGACGGCACTACCGGTTTACTATAGTAACCATGT
TGCTAAAGGATGTTGTATTTTCGGCCGGTACTGGCGATTCGAGCGGCACC
ATCTCCCACCACCGCCACTATCGCCTAGACAGCAGCAGCAGCAGCAGCAG
CAGCAACCCCCCCAGAAAAAAACATCAGCAGCAGCAGCAGCAGCAGCAAC
CCCCCCAGAAAAAAACTCGTTACGTACAAGCGACCGTTCCAAGTTAATTT
CATGTCAAAAGGAGGAGCGTCGAATGGCGCAGTGAATAACCAACAGGACG
GATGCGACTTATCTCTCTGTTTGTGATCGTACCGCTGTACGTAGTTCTCT
ACCTGCTATTGTACGACACCTACCAGTGATATCAGATGTACGTATGTACA
TATGATACGTTACAAGAGTACTTGATGTATTATGTACCTGTACCTCTGAT
ACGGTACGTACGTACAGCAGTTACGCAACTGCACCTACTTACTGCTTAGG
GTTAGGGTTGGGGTTACCTGCCCCGAGACTGCCCCTACTTACTGTTGCTA
CACCCCTCGCACCAACTACTGATGTACGTTTGCACCTACAGCTGCGGCTA
CTGCTGTTGCTGCTGTGCATAGTGTACCTACCGCCACGTATGTGTACGTT
GGCTACACGTATACATTTTAGTCTGCGCGGTTGTCTGTTCCCGAAACTCC
AGAAGCGTCCGTCCGTCCGTCCGTCCGTCCGCCCGATTCGTAAACAAAGC
CATACACGTTAACCCTATCACAGACCACCACCTCCCTGATCACTATACGC
AGATTAAGGTTACACCTAGGGAACAGGACGGCAACTCATATCTATGTCGT
GTTGCACAGTCAAATAGAGTCCCCCAAGAATGCTTGAAGCCCCCGCCGTG
AAATTAGGTAGTACATGTTGAGGCTTTTACTGAAAAATAACACAGGGTTT
TGTTTTCCCGGGTCTGAAGGACCCAAACAAGAAAAAACACGAGCAAGCAC
GGGCCAGCTAGCGATCCAACCACCGGAACTGCGTTTTTGGGCTCCGTCCT
GTTGGTGTGCTTTTTGTTGTACGATTTCCCTTGGCAGCCTCGACCCAAAC
GCTTCGTCGGGAGCACAGCCCCAACTGCAGCAACAACAGCATCTCGCTGT
TCCTGGTTTCGTTTTTCCCCACTCAAGTTCGACTCCAAACTCCAGAATGA
TATCATACCGGTACTGCTGTACGCACGTATGTATAATAGCATGATGCATC
AGTAGTGCTGTTGTTGCTGTGTAGTACTACCGTACGACACAGCAGTATCG
TATCTGAGCCTGATCCGTGATCCGGATGTCTTCTCTATTGTGCGCGATAC
TATAGCAATATCAGTGCAGTAGTAGTACTACGGGGGTCCAGAGTAAACAG
GACCTACGGTACACACAAAAACTTATACATTTACATATTTTTACTAACAA
TATTTGGTCCTATTTACTATGGTCCTCCGTAATAGTAGTAGTAGTAGTAT
TGGAGCCTGATCCGATGTCTTCGGGCTTGTGACCGAACAACATCCACAAG
TGCTTTTACAGCAAAACATATTTTGCATTGTCGACGAGACAACTACGACG
ACTAATATCACCGTCTACCATCCAGCAACGCATACAAGTTGACGACAGTT
ACAAAAATTCTGCTGCGCGAGTGCATAGCGACAGCAGTACCTTATTATTT
TATTTTGAAGACGGTAACCCCGGAAAATTCTCGCAAGATGATGTGTAGTG
AAAAATTAGTGTGGACTTACAACCAACTTGTCGAAGCTGGGCCCAACTCG
TGAACTCTATTGGTGCCAAGCCCAAACGCAATGCGGTCTTCTATTCCGCA
GGCGCCACAACAGCAGTGGGGTGTGGATGTGTATGCTCATGCGTCTTTTC
TTGCTGCACGACTTTTTTTCCCCCTCCGCCGTTGTTTTACCGTCGGCCGT
TTCAGGCAAGTGCAATTCGAGGAGGCGCATCAGTACGCCGAGGACAACGG
ACTGATTCACATGGAAACTTCGGCGAAGAGCGCACAAAACGTCAAGAGCA
TCTTCGTTGAAATTGGTGAGTGCGTGCGTCCTTTGCCTGACGTGTCGCGT
CGCCTCACGTGCGCGCGGACTCGTTGCCCTGTCTTCTTGGATTGGCGCGG
AGGGGTCAAGGCAGCGGCATCGCACTGCTGCCAATGACGAGAGGGTGGGA
CGTTACACTCGTAGGGTGTTTGCGATAAGCCAATTTGGTTGGATTATAAA
AATGTCGGAAACCGACAAAGCTGGGCTGATTGGTTAAAACACGTGAATCC
GAAGGCGCTACGCAGCCAATCAGAAGTTGCTCTACCAGCCCTCAGAGCTA
CCCAAGCCAAGAGTACTTACAGTAGATTTAAAACGTCATTTTGGTCACTT
TTTCCCACAGCGATTGATTTTTGGTCGGTTGGGGTTGCTAATATATGGGA
AGCAGACCACGGGAAATCCAACCCAATCATTTTCCCTTCAAAATCACTCT
GTTGTCGATAGCTAAGGTAAATGAAGGTTTGCCGAGGAAGAGAGGTGTAG
GGAGGAGCCTTCGAGAAGGAACAGTGTGATATTTGTTTTTTTGTGGTTTC
AGAGTGACGGAAGGGATTCTGCTGCGCGAGTTCCTAGCGACAGCTGTACA
ATCTTTAATCTTAGCTCTTCCCTCGCCCAGATGTTTGTGACCGAGGGGAC
GGTGGCCCCTGTTTTGTAGGAATAACAACGCCTCCATATCAAATGAAGGT
GATAAGGGGATATATCATAACGTTGGGAGGCTGGGGCGTGAACCGGGCGT
AGGTGCCATTTCACGGCATGAACGCTGGGGCGCGTCGGCCTCTGTGCGAA
GAGGCTTTCGAGTGGCGGAATGAGATGCTTCTTGCATCTACTGTAGTGAT
GTGTATTCGGTGTCTTGCTGTCCTGTTGGTGTCATGAAGGGTGTTTTTTT
TGTTAGCTGTCTTGAGGTACATACTGTTGGGTGCGATAAGGGTTCTTCTT
TGTTTTCGAATCGTTTGCTTCTGTCGCCGTTTTGGTAAATCGCACAACCT
GTGCCAACATCGATTCGTGGGCTGTGACTTTGGCTTCATTATCATTCGGC
CCACAGTAGAAGAACAGGTGTATTTTCCTGCTCATGCACCCCCTTCCCCT
CTCTCACCTCGTGGCGTTACGGCGCAAACCCCGATCAACACCCGATATCC
CAATTCCTGACACTTTTAACAGTCCTATTTACGAAATCGAACGAAGTGAT
ATCCACAAAACTGTGGCGTACACCAAGTCCGATAACAGCCATTGATCCGT
TCGTGATGAGGGTCTCACCGAAGTAATCATTGGCCCGTTCCTTGACGAGG
GCCCCACGACTGATGCCCTTCCCTCACCCAACCCCCCCCCCCCCCTTCCA
CCCTCTTGGCCCGCACGCACCCCCTAGCCCAAAAGCTGCCGAAGGCTACC
GTGCAGCCGGAAAGGGAAGCTTTTCCGATCATGCGGCCTAGGACGGAGAA
GAAATCCGGTTGCTGCTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig12171:174..5542+

>mRNA_M-pyrifera_M_contig12171.4461.1 ID=mRNA_M-pyrifera_M_contig12171.4461.1|Name=mRNA_M-pyrifera_M_contig12171.4461.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig12171:174..5542+ (Macrocystis pyrifera P11B4 male)
GAGTCGTTCAACGGTGCCAAGTCGTGGGTGAAGGAGCTGCAGCGCAGAGG
AGACCCGAACGTGATTATCGCGCTAGCAGGGAACAAGGCGGACCTCGAAC
ACCGCCGGAGTCGTTCAACGGTGCCAAGTCGTGGGTGAAGGAGCTGCAGC
GCAGAGGAGACCCGAACGTGATTATCGCGCTAGCAGGGAACAAGGCGGAC
CTCGAACACCGCCGGCAAGTGCAATTCGAGGAGGCGCATCAGTACGCCGA
GGACAACGGACTGATTCACATGGAAACTTCGGCGAAGAGCGCACAAAACG
TCAAGAGCATCTTCGTTGAAATTGGCAAGTGCAATTCGAGGAGGCGCATC
AGTACGCCGAGGACAACGGACTGATTCACATGGAAACTTCGGCGAAGAGC
GCACAAAACGTCAAGAGCATCTTCGTTGAAATTGCCCAAAAGCTGCCGAA
GGCTACCGTGCAGCCGGAAAGGGAAGCTTTTCCGATCATGCGGCCTAGGA
CGGAGAAGAAATCCGGTTGCTGCTGACCCAAAAGCTGCCGAAGGCTACCG
TGCAGCCGGAAAGGGAAGCTTTTCCGATCATGCGGCCTAGGACGGAGAAG
AAATCCGGTTGCTGCTGA
back to top