mRNA_M-pyrifera_M_contig121654.4455.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121654.4455.1
Unique NamemRNA_M-pyrifera_M_contig121654.4455.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121654.4455.1 vs. uniprot
Match: A0A2D5VED1_9BACT (Sialidase domain-containing protein n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A2D5VED1_9BACT)

HSP 1 Score: 113 bits (283), Expect = 7.680e-29
Identity = 58/113 (51.33%), Postives = 68/113 (60.18%), Query Frame = 1
Query:    1 EGPLMFCGFAN-----EPMPVQTQCGIDRMVQGLFCAVSLSEGDAWEHKRLVSDDGPGTLLEQLDGTLFIMNATHAEADGYSTARQSRNDSIIHLITSRTHYRFNLQWLTTKP 324
            EGPL F  F       E M +    G DR+V GLF A+S  EG+ W H RLVSDDGPG  +E +D   FIM    AE  GY TA QS ND ++HLI+S+ HY FNL WL T P
Sbjct:  132 EGPLFFASFTGSRKTPEYMSITDASGKDRLVTGLFAAISFDEGETWPHIRLVSDDGPGREVETMDRRPFIMGFRSAEPGGYLTACQS-NDGLVHLISSQQHYAFNLAWLKTPP 243          
BLAST of mRNA_M-pyrifera_M_contig121654.4455.1 vs. uniprot
Match: X1IAC6_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1IAC6_9ZZZZ)

HSP 1 Score: 107 bits (266), Expect = 1.810e-26
Identity = 52/106 (49.06%), Postives = 68/106 (64.15%), Query Frame = 1
Query:    1 EGPLMFCGFANEPMPVQTQCGIDRMVQGLFCAVSLSEGDAWEHKRLVSDDGPGTLLEQLDGTLFIMNATHAEADGYSTARQSRNDSIIHLITSRTHYRFNLQWLTT 318
            +GPL F  F ++ M +    G  R V GLF AVSL EG  W ++RLVSDDGPG  +E +DG    M+A +AE  GY +  QS  D ++HL++SR HY FNL+WL T
Sbjct:  112 QGPLFFASFCHQMM-IMDVSGKPRAVSGLFAAVSLDEGKTWPYRRLVSDDGPGRYIETMDGDPITMDARNAEPTGYLSVCQSA-DGLVHLLSSRQHYAFNLKWLMT 215          
BLAST of mRNA_M-pyrifera_M_contig121654.4455.1 vs. uniprot
Match: A0A524HMY5_9BACT (Glycoside hydrolase n=1 Tax=Candidatus Brocadiae bacterium TaxID=2517210 RepID=A0A524HMY5_9BACT)

HSP 1 Score: 108 bits (269), Expect = 4.410e-25
Identity = 53/110 (48.18%), Postives = 74/110 (67.27%), Query Frame = 1
Query:    1 EGPLMFCGFANEPMPVQTQCGIDRMVQGLFCAVSLSEGDAWEHKRLVSDDGPGTLLEQLDGTLFIMNATHAEADGYSTARQSRNDSIIHLITSRTHYRFNLQWLTT-KPA 327
            +GP+ F  FA+    +    G  RM++GLF AVS  +G  W +KRLV+DDGP   +E   G L++M+ +++E  GY +A Q+ ND +IHLITSR HY FNL+WLTT +PA
Sbjct:  555 QGPIFFASFADLGTDIVDASGKKRMIRGLFVAVSTDDGKTWPYKRLVTDDGPPRPVETTAGGLWLMSTSNSEYRGYMSAIQATND-LIHLITSRQHYAFNLKWLTTPQPA 663          
BLAST of mRNA_M-pyrifera_M_contig121654.4455.1 vs. uniprot
Match: A0A7C8AHS9_9BACT (SUMF1/EgtB/PvdO family nonheme iron enzyme n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C8AHS9_9BACT)

HSP 1 Score: 107 bits (267), Expect = 8.220e-25
Identity = 53/109 (48.62%), Postives = 65/109 (59.63%), Query Frame = 1
Query:    1 EGPLMFCGFANEPMPVQTQCGIDRMVQGLFCAVSLSEGDAWEHKRLVSDDGPGTLLEQLDGTLFIMNATHAEADGYSTARQSRNDSIIHLITSRTHYRFNLQWLTTKPA 327
            EGPL F  F +    +    G+ R V+GLF AVS   G  W +KRLVSDDGPG  +E   G LFIM+  + E  GY +A QS    +IHL+TSR HY FNL+WL    A
Sbjct:  560 EGPLFFASFTDHGTEITDASGVRRTVRGLFAAVSEDGGRTWPYKRLVSDDGPGRAVESTAGGLFIMSQRNGEYRGYMSAVQSPT-GVIHLVTSREHYEFNLEWLKEPSA 667          
BLAST of mRNA_M-pyrifera_M_contig121654.4455.1 vs. uniprot
Match: A0A1V5ZB30_9BACT (Serine/threonine-protein kinase pkn1 n=1 Tax=Candidatus Latescibacteria bacterium ADurb.Bin168 TaxID=1852850 RepID=A0A1V5ZB30_9BACT)

HSP 1 Score: 107 bits (266), Expect = 1.070e-24
Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 1
Query:    1 EGPLMFCGFANEPMPVQTQCGIDRMVQGLFCAVSLSEGDAWEHKRLVSDDGPGTLLEQLDGTLFIMNATHAEADGYSTARQSRNDSIIHLITSRTHYRFNLQWLTTKP 324
            EGPL+F  FAN+P+ +    G  R + GL+CA S  EG  W + R+VSDDG    +E  DG   +++A+ +E  GY T  Q+ N  +IHLI+SR HY FNL WLT  P
Sbjct:  540 EGPLLFVSFANDPLEITDVTGTRRSITGLYCAFSFDEGATWANTRVVSDDGLPRPVEAFDGRPNVLSASQSEIAGYMTVCQADN-GLIHLISSRNHYTFNLAWLTEPP 646          
BLAST of mRNA_M-pyrifera_M_contig121654.4455.1 vs. uniprot
Match: A0A524HL50_9BACT (Uncharacterized protein n=1 Tax=Candidatus Brocadiae bacterium TaxID=2517210 RepID=A0A524HL50_9BACT)

HSP 1 Score: 105 bits (262), Expect = 3.890e-24
Identity = 53/109 (48.62%), Postives = 71/109 (65.14%), Query Frame = 1
Query:    1 EGPLMFCGFANEPMPVQTQCGIDRMVQGLFCAVSLSEGDAWEHKRLVSDDGPGTLLEQLDGTLFIMNATHAEADGYSTARQSRNDSIIHLITSRTHYRFNLQWLTTKPA 327
            EGPL F  FA+  + +    G  R+V+GLF AVS  EG  W + RLV+DDGPG  +E  +G LF M+A ++E  GY+   QS  D +IH+I+SR H+ FNL+WL T PA
Sbjct:  572 EGPLFFGSFADWGIEITDASGDKRVVRGLFAAVSTDEGKTWPYMRLVTDDGPGRPVESTNGGLFTMSAGNSEYQGYTNGCQSA-DGLIHIISSRQHFTFNLKWLMT-PA 678          
BLAST of mRNA_M-pyrifera_M_contig121654.4455.1 vs. uniprot
Match: A0A382X6X2_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382X6X2_9ZZZZ)

HSP 1 Score: 97.8 bits (242), Expect = 4.990e-24
Identity = 53/114 (46.49%), Postives = 62/114 (54.39%), Query Frame = 1
Query:    1 EGPLMFCGFANE-----PMPVQTQCGIDRMVQGLFCAVSLSEGDAWEHKRLVSDDGPGTLLEQLDGTLFIMNATHAEADGYSTARQSRNDSIIHLITSRTHYRFNLQWLTTKPA 327
            EGPL    F  +      M V    G  R V GLF AVSL EG  W + RLVS DGP   LE  +G  F M  + AE  GY    QS  D +IHLI+S+ HY FN+ WLTT P+
Sbjct:    9 EGPLFLASFTGDRKDQPEMEVTDVAGHKRSVTGLFTAVSLDEGQTWSNIRLVSHDGPDRQLETTNGNPFTMGISTAEPGGYLAGCQSP-DGLIHLISSKQHYTFNMTWLTTPPS 121          
BLAST of mRNA_M-pyrifera_M_contig121654.4455.1 vs. uniprot
Match: A0A7X3WMS5_9BACT (SUMF1/EgtB/PvdO family nonheme iron enzyme n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A7X3WMS5_9BACT)

HSP 1 Score: 103 bits (256), Expect = 1.620e-23
Identity = 50/113 (44.25%), Postives = 67/113 (59.29%), Query Frame = 1
Query:    1 EGPLMFCGF-----ANEPMPVQTQCGIDRMVQGLFCAVSLSEGDAWEHKRLVSDDGPGTLLEQLDGTLFIMNATHAEADGYSTARQSRNDSIIHLITSRTHYRFNLQWLTTKP 324
            EGP++   F     + E MP+    G +R + GLF A+S ++GD WE+ RLV+DDGP   +E +DG  F M    AE  GY    Q  +D +IHLI+S+ HYRFN  WLT  P
Sbjct:  366 EGPILLASFTGSRKSQETMPIVDTSGKERRITGLFTALSYNDGDTWENIRLVTDDGPDREIETMDGRPFTMGLNSAEPGGYLAVCQG-DDGMIHLISSKQHYRFNYAWLTEPP 477          
BLAST of mRNA_M-pyrifera_M_contig121654.4455.1 vs. uniprot
Match: A0A496A9J7_9BACT (Glycoside hydrolase n=3 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A496A9J7_9BACT)

HSP 1 Score: 103 bits (257), Expect = 1.780e-23
Identity = 52/113 (46.02%), Postives = 64/113 (56.64%), Query Frame = 1
Query:    1 EGPLMFCGFANE-----PMPVQTQCGIDRMVQGLFCAVSLSEGDAWEHKRLVSDDGPGTLLEQLDGTLFIMNATHAEADGYSTARQSRNDSIIHLITSRTHYRFNLQWLTTKP 324
            EGP+    F  E     PMP+    G +R+V GLF A+S  +G+ WEH RL++DDG    LE +DG  F M    AE  GY    Q +N  IIHLI+SR HYRFN  WL   P
Sbjct:  558 EGPIFLATFTGERKALTPMPIVDASGNERLVTGLFGALSYDDGETWEHTRLITDDGEDRDLETMDGRPFTMGLNSAELGGYLAVCQGQN-GIIHLISSRQHYRFNYAWLKEPP 669          
BLAST of mRNA_M-pyrifera_M_contig121654.4455.1 vs. uniprot
Match: A0A495ZCA3_9BACT (Glycoside hydrolase n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A495ZCA3_9BACT)

HSP 1 Score: 103 bits (256), Expect = 2.440e-23
Identity = 50/113 (44.25%), Postives = 63/113 (55.75%), Query Frame = 1
Query:    1 EGPLMFCGFAN-----EPMPVQTQCGIDRMVQGLFCAVSLSEGDAWEHKRLVSDDGPGTLLEQLDGTLFIMNATHAEADGYSTARQSRNDSIIHLITSRTHYRFNLQWLTTKP 324
            EGP+    F       E MP+    G + +V GLF A+S  +G+ W H RL+SDDGPG  +E +DG  F M    AE  GY    Q RN  I+HLI+S+ HYRFN  WL   P
Sbjct:  559 EGPIFLASFTGSRKTPETMPIVDDSGNEHLVTGLFGALSYDDGETWSHIRLISDDGPGREIETMDGRPFTMGLNSAEPGGYLAVCQDRN-GIVHLISSKQHYRFNYAWLKEVP 670          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121654.4455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D5VED1_9BACT7.680e-2951.33Sialidase domain-containing protein n=1 Tax=Candid... [more]
X1IAC6_9ZZZZ1.810e-2649.06Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A524HMY5_9BACT4.410e-2548.18Glycoside hydrolase n=1 Tax=Candidatus Brocadiae b... [more]
A0A7C8AHS9_9BACT8.220e-2548.62SUMF1/EgtB/PvdO family nonheme iron enzyme n=1 Tax... [more]
A0A1V5ZB30_9BACT1.070e-2446.30Serine/threonine-protein kinase pkn1 n=1 Tax=Candi... [more]
A0A524HL50_9BACT3.890e-2448.62Uncharacterized protein n=1 Tax=Candidatus Brocadi... [more]
A0A382X6X2_9ZZZZ4.990e-2446.49Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A7X3WMS5_9BACT1.620e-2344.25SUMF1/EgtB/PvdO family nonheme iron enzyme n=1 Tax... [more]
A0A496A9J7_9BACT1.780e-2346.02Glycoside hydrolase n=3 Tax=Candidatus Poribacteri... [more]
A0A495ZCA3_9BACT2.440e-2344.25Glycoside hydrolase n=1 Tax=Candidatus Poribacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121654contigM-pyrifera_M_contig121654:2..334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score79.0
Seed ortholog evalue1.5e-12
Seed eggNOG ortholog1122917.KB899661_gene1195
Hectar predicted targeting categoryother localisation
EggNOG free text desc.exo-alpha-(2->6)-sialidase activity
EggNOG OGsCOG1262@1,COG1262@2,COG4409@1,COG4409@2
COG Functional cat.G
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size333
Cds size321
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815735.9703114-UTR-M-pyrifera_M_contig121654:1..131622815735.9703114-UTR-M-pyrifera_M_contig121654:1..13Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121654 2..13 +
1692277545.095467-UTR-M-pyrifera_M_contig121654:1..131692277545.095467-UTR-M-pyrifera_M_contig121654:1..13Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121654 2..13 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815735.982166-CDS-M-pyrifera_M_contig121654:13..3341622815735.982166-CDS-M-pyrifera_M_contig121654:13..334Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121654 14..334 +
1692277545.1076276-CDS-M-pyrifera_M_contig121654:13..3341692277545.1076276-CDS-M-pyrifera_M_contig121654:13..334Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121654 14..334 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121654.4455.1prot_M-pyrifera_M_contig121654.4455.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121654 14..334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121654.4455.1

>prot_M-pyrifera_M_contig121654.4455.1 ID=prot_M-pyrifera_M_contig121654.4455.1|Name=mRNA_M-pyrifera_M_contig121654.4455.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
MFCGFANEPMPVQTQCGIDRMVQGLFCAVSLSEGDAWEHKRLVSDDGPGT
LLEQLDGTLFIMNATHAEADGYSTARQSRNDSIIHLITSRTHYRFNLQWL
TTKPAC*
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mRNA from alignment at M-pyrifera_M_contig121654:2..334+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121654.4455.1 ID=mRNA_M-pyrifera_M_contig121654.4455.1|Name=mRNA_M-pyrifera_M_contig121654.4455.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig121654:2..334+ (Macrocystis pyrifera P11B4 male)
GAAGGCCCGCTCATGTTTTGCGGATTTGCAAACGAGCCCATGCCCGTGCA AACCCAGTGCGGCATCGACAGAATGGTACAGGGCCTGTTCTGCGCAGTCT CGCTCTCTGAAGGCGACGCGTGGGAACACAAGAGGCTCGTCTCAGACGAT GGCCCAGGCACCCTCCTCGAACAACTTGATGGGACGCTCTTCATCATGAA CGCAACCCACGCAGAGGCTGACGGATACTCCACCGCGAGACAGTCCCGAA ACGACTCCATCATCCACCTCATCACCTCCAGAACACACTACAGGTTCAAC CTGCAATGGCTCACCACGAAACCAGCATGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121654:2..334+

>mRNA_M-pyrifera_M_contig121654.4455.1 ID=mRNA_M-pyrifera_M_contig121654.4455.1|Name=mRNA_M-pyrifera_M_contig121654.4455.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig121654:2..334+ (Macrocystis pyrifera P11B4 male)
ATGTTTTGCGGATTTGCAAACGAGCCCATGCCCGTGCAAACCCAGTGCGG
CATCGACAGAATGGTACAGGGCCTGTTCTGCGCAGTCTCGCTCTCTGAAG
GCGACGCGTGGGAACACAAGAGGCTCGTCTCAGACGATGGCCCAGGCACC
CTCCTCGAACAACTTGATGGGACGCTCTTCATCATGAACGCAACCCACGC
AGAGGCTGACGGATACTCCACCGCGAGACAGTCCCGAAACGACTCCATCA
TCCACCTCATCACCTCCAGAACACACTACAGGTTCAACCTGCAATGGCTC
ACCACGAAACCAGCATGCTGAATGTTTTGCGGATTTGCAAACGAGCCCAT
GCCCGTGCAAACCCAGTGCGGCATCGACAGAATGGTACAGGGCCTGTTCT
GCGCAGTCTCGCTCTCTGAAGGCGACGCGTGGGAACACAAGAGGCTCGTC
TCAGACGATGGCCCAGGCACCCTCCTCGAACAACTTGATGGGACGCTCTT
CATCATGAACGCAACCCACGCAGAGGCTGACGGATACTCCACCGCGAGAC
AGTCCCGAAACGACTCCATCATCCACCTCATCACCTCCAGAACACACTAC
AGGTTCAACCTGCAATGGCTCACCACGAAACCAGCATGCTGA
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