mRNA_M-pyrifera_M_contig12165.4453.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12165.4453.1
Unique NamemRNA_M-pyrifera_M_contig12165.4453.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig12165.4453.1 vs. uniprot
Match: D7FXP8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXP8_ECTSI)

HSP 1 Score: 221 bits (564), Expect = 7.270e-64
Identity = 138/224 (61.61%), Postives = 149/224 (66.52%), Query Frame = 1 
Query:    1 TTYRDWERIDNLRIDKYYTLVRMFLREVLLFCRIPAPPSAAMKANAPSSPKPAGRKSKXXXXXXXXXXXXXXXXXXXAVESCEASLIGEAGWDLGLLRAMSDVMEEEIVTLHPAPIGLRLHLADVWTDEALAAGGEDMPTEAFLVALAPWLRAAAAPDTNAVVFKRTFEGVFEGLLGCFAEKGQEGGEGMEXXXXXXXXXKKVFKKVDLSRVQACLFEVAAAPQ 672
            T  RDWERIDNLRIDKYYTLVR+F+RE L FC +P PP+          PK                XXXXXXXX    E  E S      WDLGLL AMSDVME E++TL PAPIGLRLHLADVW +EA  AGG DMPTEAFLVALAPWLR AA P+TN VVF+RTFEGVFEGLLG F E      +GME         KKVF  V+L RVQACLFEVAAAPQ
Sbjct:  125 TMQRDWERIDNLRIDKYYTLVRVFVREALAFCCLP-PPAVE------GQPK---------------QXXXXXXXXNSPAEEAETSAKAGGVWDLGLLGAMSDVMEVEVLTLRPAPIGLRLHLADVWAEEACNAGGADMPTEAFLVALAPWLRVAAEPETNPVVFRRTFEGVFEGLLGLFPEDK----DGMEEEEEE----KKVFAAVELDRVQACLFEVAAAPQ 318
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12165.4453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXP8_ECTSI7.270e-6461.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12165contigM-pyrifera_M_contig12165:324..995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score223.4
Seed ortholog evalue1.1e-55
Seed eggNOG ortholog2880.D7FXP8
Preferred nameRRP1B
KEGG koko:K14849
Hectar predicted targeting categoryother localisation
GOsGO:0000785,GO:0000791,GO:0000792,GO:0001652,GO:0003674,GO:0003712,GO:0003713,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009615,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010563,GO:0010604,GO:0010628,GO:0010921,GO:0010923,GO:0010941,GO:0010942,GO:0016070,GO:0016072,GO:0019219,GO:0019220,GO:0019222,GO:0022613,GO:0030684,GO:0030687,GO:0030688,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0034260,GO:0034470,GO:0034641,GO:0034660,GO:0035303,GO:0035305,GO:0035821,GO:0042254,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043087,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043900,GO:0043902,GO:0043903,GO:0043921,GO:0043923,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045893,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0046782,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0050434,GO:0050789,GO:0050790,GO:0050792,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051252,GO:0051254,GO:0051336,GO:0051346,GO:0051702,GO:0051704,GO:0051707,GO:0051817,GO:0051851,GO:0052312,GO:0052472,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098586,GO:0140110,GO:1901360,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.rRNA processing
EggNOG OGsKOG3911@1,KOG3911@2759
Ec32 ortholog descriptionNucleolar, Nop52
Ec32 orthologEc-28_001580.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03009
Exons1
Model size672
Cds size672
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815735.8757484-CDS-M-pyrifera_M_contig12165:323..9951622815735.8757484-CDS-M-pyrifera_M_contig12165:323..995Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12165 324..995 -
1692277545.0692952-CDS-M-pyrifera_M_contig12165:323..9951692277545.0692952-CDS-M-pyrifera_M_contig12165:323..995Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12165 324..995 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12165.4453.1prot_M-pyrifera_M_contig12165.4453.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12165 324..995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12165.4453.1

>prot_M-pyrifera_M_contig12165.4453.1 ID=prot_M-pyrifera_M_contig12165.4453.1|Name=mRNA_M-pyrifera_M_contig12165.4453.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=224bp
TTYRDWERIDNLRIDKYYTLVRMFLREVLLFCRIPAPPSAAMKANAPSSP
KPAGRKSKNKKRKSSSSAENEKEEKEEAVESCEASLIGEAGWDLGLLRAM
SDVMEEEIVTLHPAPIGLRLHLADVWTDEALAAGGEDMPTEAFLVALAPW
LRAAAAPDTNAVVFKRTFEGVFEGLLGCFAEKGQEGGEGMEVEEEEEEQE
KKVFKKVDLSRVQACLFEVAAAPQ
back to top

mRNA from alignment at M-pyrifera_M_contig12165:324..995-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12165.4453.1 ID=mRNA_M-pyrifera_M_contig12165.4453.1|Name=mRNA_M-pyrifera_M_contig12165.4453.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig12165:324..995- (Macrocystis pyrifera P11B4 male)
ACGACATATAGGGACTGGGAGCGCATCGACAACTTGAGGATCGACAAGTA
TTACACCTTGGTGCGGATGTTCCTGCGCGAAGTTCTCCTATTTTGCCGCA
TCCCCGCCCCCCCCTCCGCGGCGATGAAGGCAAACGCCCCCTCCTCTCCC
AAGCCAGCGGGTCGCAAAAGCAAGAACAAGAAGAGAAAGTCATCATCCTC
GGCGGAAAATGAGAAGGAGGAGAAGGAGGAGGCTGTAGAGAGCTGCGAGG
CTTCGTTGATAGGGGAGGCGGGGTGGGACCTGGGTTTGTTAAGGGCTATG
TCGGATGTAATGGAGGAAGAGATTGTGACGCTGCACCCCGCGCCGATCGG
GTTGCGTCTTCACCTCGCCGACGTGTGGACGGATGAGGCCCTTGCGGCTG
GAGGTGAGGACATGCCCACGGAGGCGTTTTTGGTGGCCCTGGCCCCGTGG
TTGAGAGCCGCCGCCGCCCCCGACACGAACGCCGTGGTTTTCAAGAGGAC
GTTTGAAGGCGTTTTCGAGGGCCTGCTCGGCTGCTTTGCGGAAAAGGGGC
AGGAAGGAGGGGAGGGGATGGAGGTGGAGGAGGAGGAGGAGGAACAGGAG
AAGAAAGTTTTCAAGAAGGTGGACCTGTCGAGGGTTCAAGCGTGTTTGTT
TGAGGTCGCCGCGGCACCGCAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig12165:324..995-

>mRNA_M-pyrifera_M_contig12165.4453.1 ID=mRNA_M-pyrifera_M_contig12165.4453.1|Name=mRNA_M-pyrifera_M_contig12165.4453.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1344bp|location=Sequence derived from alignment at M-pyrifera_M_contig12165:324..995- (Macrocystis pyrifera P11B4 male)
ACGACATATAGGGACTGGGAGCGCATCGACAACTTGAGGATCGACAAGTA
TTACACCTTGGTGCGGATGTTCCTGCGCGAAGTTCTCCTATTTTGCCGCA
TCCCCGCCCCCCCCTCCGCGGCGATGAAGGCAAACGCCCCCTCCTCTCCC
AAGCCAGCGGGTCGCAAAAGCAAGAACAAGAAGAGAAAGTCATCATCCTC
GGCGGAAAATGAGAAGGAGGAGAAGGAGGAGGCTGTAGAGAGCTGCGAGG
CTTCGTTGATAGGGGAGGCGGGGTGGGACCTGGGTTTGTTAAGGGCTATG
TCGGATGTAATGGAGGAAGAGATTGTGACGCTGCACCCCGCGCCGATCGG
GTTGCGTCTTCACCTCGCCGACGTGTGGACGGATGAGGCCCTTGCGGCTG
GAGGTGAGGACATGCCCACGGAGGCGTTTTTGGTGGCCCTGGCCCCGTGG
TTGAGAGCCGCCGCCGCCCCCGACACGAACGCCGTGGTTTTCAAGAGGAC
GTTTGAAGGCGTTTTCGAGGGCCTGCTCGGCTGCTTTGCGGAAAAGGGGC
AGGAAGGAGGGGAGGGGATGGAGGTGGAGGAGGAGGAGGAGGAACAGGAG
AAGAAAGTTTTCAAGAAGGTGGACCTGTCGAGGGTTCAAGCGTGTTTGTT
TGAGGTCGCCGCGGCACCGCAGACGACATATAGGGACTGGGAGCGCATCG
ACAACTTGAGGATCGACAAGTATTACACCTTGGTGCGGATGTTCCTGCGC
GAAGTTCTCCTATTTTGCCGCATCCCCGCCCCCCCCTCCGCGGCGATGAA
GGCAAACGCCCCCTCCTCTCCCAAGCCAGCGGGTCGCAAAAGCAAGAACA
AGAAGAGAAAGTCATCATCCTCGGCGGAAAATGAGAAGGAGGAGAAGGAG
GAGGCTGTAGAGAGCTGCGAGGCTTCGTTGATAGGGGAGGCGGGGTGGGA
CCTGGGTTTGTTAAGGGCTATGTCGGATGTAATGGAGGAAGAGATTGTGA
CGCTGCACCCCGCGCCGATCGGGTTGCGTCTTCACCTCGCCGACGTGTGG
ACGGATGAGGCCCTTGCGGCTGGAGGTGAGGACATGCCCACGGAGGCGTT
TTTGGTGGCCCTGGCCCCGTGGTTGAGAGCCGCCGCCGCCCCCGACACGA
ACGCCGTGGTTTTCAAGAGGACGTTTGAAGGCGTTTTCGAGGGCCTGCTC
GGCTGCTTTGCGGAAAAGGGGCAGGAAGGAGGGGAGGGGATGGAGGTGGA
GGAGGAGGAGGAGGAACAGGAGAAGAAAGTTTTCAAGAAGGTGGACCTGT
CGAGGGTTCAAGCGTGTTTGTTTGAGGTCGCCGCGGCACCGCAG
back to top