mRNA_M-pyrifera_M_contig121634.4447.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121634.4447.1
Unique NamemRNA_M-pyrifera_M_contig121634.4447.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121634.4447.1 vs. uniprot
Match: A0A6B1AX96_9ACTN (Acetolactate synthase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1AX96_9ACTN)

HSP 1 Score: 317 bits (813), Expect = 1.540e-103
Identity = 162/177 (91.53%), Postives = 167/177 (94.35%), Query Frame = 1
Query:    1 VAMVTSGPAATNVVTPLADAFLDSVPMVCITGQVPYAAIGTDAFQECDTTGITMAVTKHNFLVTEAQDIPRIIHEAFHIATTGRPGPVLVDIPKDIVDPTNPRSAMHWYEATDADMELPGYHPVTQGDRELIRRAAEMIRDAERPVLYVGGGVLKARAAEALLELAEMVQIPVVTTL 531
            V MVTSGPAATNVVTPL DAFLDSVPMVCITGQVPYAAIGTDAFQECDTTGITMAVTKHNFLVTEAQDIPR I  AFHIATTGRPGPVLVDIPKDIVDP NPRSAM WYEATDADM+LPGYHP+TQGD ELIR AAEMIR AERPVLYVGGG+LK+RAAEALL+LAEMVQIPVVTTL
Sbjct:   66 VVMVTSGPAATNVVTPLCDAFLDSVPMVCITGQVPYAAIGTDAFQECDTTGITMAVTKHNFLVTEAQDIPRTIRAAFHIATTGRPGPVLVDIPKDIVDPVNPRSAMTWYEATDADMDLPGYHPITQGDPELIRAAAEMIRTAERPVLYVGGGILKSRAAEALLQLAEMVQIPVVTTL 242          
BLAST of mRNA_M-pyrifera_M_contig121634.4447.1 vs. uniprot
Match: A0A7X5WTW4_9ACTN (Acetolactate synthase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WTW4_9ACTN)

HSP 1 Score: 315 bits (808), Expect = 7.500e-102
Identity = 160/177 (90.40%), Postives = 168/177 (94.92%), Query Frame = 1
Query:    1 VAMVTSGPAATNVVTPLADAFLDSVPMVCITGQVPYAAIGTDAFQECDTTGITMAVTKHNFLVTEAQDIPRIIHEAFHIATTGRPGPVLVDIPKDIVDPTNPRSAMHWYEATDADMELPGYHPVTQGDRELIRRAAEMIRDAERPVLYVGGGVLKARAAEALLELAEMVQIPVVTTL 531
            VAMVTSGPAATNVVTPL DA+LDSVPMVCITGQVPYAAIGTDAFQECDTTGITMAVTKHNFLV+EAQDIPR+IHEAFHIATTGRPGPVLVDIPKDIVDP NPRSAM WYE +DADMELPGYHP+  GD ELIR+AAE+I  AERPVLYVGGGVLKARAAEAL+ELAEMVQIPVVTTL
Sbjct:  153 VAMVTSGPAATNVVTPLCDAYLDSVPMVCITGQVPYAAIGTDAFQECDTTGITMAVTKHNFLVSEAQDIPRVIHEAFHIATTGRPGPVLVDIPKDIVDPQNPRSAMTWYEPSDADMELPGYHPIVDGDPELIRQAAELIAAAERPVLYVGGGVLKARAAEALMELAEMVQIPVVTTL 329          
BLAST of mRNA_M-pyrifera_M_contig121634.4447.1 vs. uniprot
Match: A0A3M2GFE8_ACTSX (Acetolactate synthase large subunit (Fragment) n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GFE8_ACTSX)

HSP 1 Score: 293 bits (749), Expect = 5.510e-98
Identity = 149/177 (84.18%), Postives = 157/177 (88.70%), Query Frame = 1
Query:    1 VAMVTSGPAATNVVTPLADAFLDSVPMVCITGQVPYAAIGTDAFQECDTTGITMAVTKHNFLVTEAQDIPRIIHEAFHIATTGRPGPVLVDIPKDIVDPTNPRSAMHWYEATDADMELPGYHPVTQGDRELIRRAAEMIRDAERPVLYVGGGVLKARAAEALLELAEMVQIPVVTTL 531
            V MVTSGP ATN+VTPL DA++DSVP+V ITGQVPYAAIGTDAFQECDTTGITMAVTKHNFLVTEA DIPRIIHEAFHIATTGRPGPVLVD+PKD+VDPTNPRSAM WYE TDADMELPGY PVT GD   +  AAEMI  A RPVLYVGGGVLKARAAEAL ELAE+  IPVVTTL
Sbjct:   68 VVMVTSGPGATNIVTPLCDAYMDSVPLVAITGQVPYAAIGTDAFQECDTTGITMAVTKHNFLVTEAADIPRIIHEAFHIATTGRPGPVLVDVPKDLVDPTNPRSAMEWYEVTDADMELPGYAPVTSGDPAEVAAAAEMIAGARRPVLYVGGGVLKARAAEALRELAELTGIPVVTTL 244          
BLAST of mRNA_M-pyrifera_M_contig121634.4447.1 vs. uniprot
Match: A0A7K2E680_9ACTN (Acetolactate synthase n=4 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2E680_9ACTN)

HSP 1 Score: 290 bits (743), Expect = 1.560e-92
Identity = 146/177 (82.49%), Postives = 157/177 (88.70%), Query Frame = 1
Query:    1 VAMVTSGPAATNVVTPLADAFLDSVPMVCITGQVPYAAIGTDAFQECDTTGITMAVTKHNFLVTEAQDIPRIIHEAFHIATTGRPGPVLVDIPKDIVDPTNPRSAMHWYEATDADMELPGYHPVTQGDRELIRRAAEMIRDAERPVLYVGGGVLKARAAEALLELAEMVQIPVVTTL 531
            VAM+TSGP ATN VTPL DA++DS+P+VCITGQVPYAAIGTDAFQECDTTGITMAVTKHNFLVTEAQDIPRIIHEAFHIATTGRPGPVLVDIPKDIVDP NPRSAM WYE TD  MELPGY P T GD EL+R AAE+I  AERPVLY GGG+LKARAA  LL LAE++ +PVVTTL
Sbjct:  116 VAMITSGPGATNGVTPLCDAYMDSIPLVCITGQVPYAAIGTDAFQECDTTGITMAVTKHNFLVTEAQDIPRIIHEAFHIATTGRPGPVLVDIPKDIVDPRNPRSAMTWYEPTDDIMELPGYRPATAGDPELVRAAAELICKAERPVLYAGGGILKARAAAELLALAELIDVPVVTTL 292          
BLAST of mRNA_M-pyrifera_M_contig121634.4447.1 vs. uniprot
Match: A0A2D8GFI5_9ACTN (Acetolactate synthase n=11 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8GFI5_9ACTN)

HSP 1 Score: 286 bits (732), Expect = 3.540e-91
Identity = 148/177 (83.62%), Postives = 156/177 (88.14%), Query Frame = 1
Query:    1 VAMVTSGPAATNVVTPLADAFLDSVPMVCITGQVPYAAIGTDAFQECDTTGITMAVTKHNFLVTEAQDIPRIIHEAFHIATTGRPGPVLVDIPKDIVDPTNPRSAMHWYEATDADMELPGYHPVTQGDRELIRRAAEMIRDAERPVLYVGGGVLKARAAEALLELAEMVQIPVVTTL 531
            V MVTSGPAATNVVTPLADA LDSVPMVCITGQVP AAIGTDAFQECDTTGITMAVTKHN LVT+AQDIPRIIHEAFHIATTGRPGPVLVDIPKDIVDPTNP+SAM WY+     MELPGY PV +GD  LI  AA +I  A RPVLYVGGGVLKARAAE LL+LAE++QIPVVTTL
Sbjct:   72 VCMVTSGPAATNVVTPLADAMLDSVPMVCITGQVPLAAIGTDAFQECDTTGITMAVTKHNXLVTDAQDIPRIIHEAFHIATTGRPGPVLVDIPKDIVDPTNPKSAMTWYDPDSVPMELPGYRPVMEGDPALIEEAAALIAQAXRPVLYVGGGVLKARAAEPLLKLAELLQIPVVTTL 248          
BLAST of mRNA_M-pyrifera_M_contig121634.4447.1 vs. uniprot
Match: A0A2E4SUW8_9ACTN (Acetolactate synthase n=2 Tax=root TaxID=1 RepID=A0A2E4SUW8_9ACTN)

HSP 1 Score: 272 bits (696), Expect = 5.460e-86
Identity = 141/177 (79.66%), Postives = 156/177 (88.14%), Query Frame = 1
Query:    1 VAMVTSGPAATNVVTPLADAFLDSVPMVCITGQVPYAAIGTDAFQECDTTGITMAVTKHNFLVTEAQDIPRIIHEAFHIATTGRPGPVLVDIPKDIVDPTNPRSAMHWYEATDADMELPGYHPVTQGDRELIRRAAEMIRDAERPVLYVGGGVLKARAAEALLELAEMVQIPVVTTL 531
            VAMVTSGPAATN+VTPL DA+LDSVPMV +TGQVPYAAIGTDAFQECDTTGIT ++TKHNFLVTEAQDIPRII EAFHIATTGRPGPVLVDIPKDIVDPTNPRSAM W +    +M+LPGYHP T+ D +LI  AA++IR AERPVLYVGGG+LKARAA+AL  LAE+  I VVTTL
Sbjct:   71 VAMVTSGPAATNIVTPLCDAYLDSVPMVVVTGQVPYAAIGTDAFQECDTTGITQSITKHNFLVTEAQDIPRIIKEAFHIATTGRPGPVLVDIPKDIVDPTNPRSAMTWTDGV--EMDLPGYHPQTEVDVDLIAAAADLIRTAERPVLYVGGGILKARAADALRALAELTGIGVVTTL 245          
BLAST of mRNA_M-pyrifera_M_contig121634.4447.1 vs. uniprot
Match: A0A3D5K2J7_9ACTN (Acetolactate synthase (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3D5K2J7_9ACTN)

HSP 1 Score: 266 bits (679), Expect = 2.810e-85
Identity = 139/177 (78.53%), Postives = 153/177 (86.44%), Query Frame = 1
Query:    1 VAMVTSGPAATNVVTPLADAFLDSVPMVCITGQVPYAAIGTDAFQECDTTGITMAVTKHNFLVTEAQDIPRIIHEAFHIATTGRPGPVLVDIPKDIVDPTNPRSAMHWYEATDADMELPGYHPVTQGDRELIRRAAEMIRDAERPVLYVGGGVLKARAAEALLELAEMVQIPVVTTL 531
            VAMVTSGPAATN+VTPL DA+LDSVPMV +TGQVPYAAIGTDAFQECDTTGIT ++TKHNFLVTEAQDIPR I EAFHIATTGRPGPVLVDIPKDIVDP NPRSAM W++  D +M+LPGY P T  D +LI  AA +IR AERPVLYVGGG+LKARAA+AL  LAE+  I VVTTL
Sbjct:   71 VAMVTSGPAATNIVTPLCDAYLDSVPMVVVTGQVPYAAIGTDAFQECDTTGITQSITKHNFLVTEAQDIPRTIKEAFHIATTGRPGPVLVDIPKDIVDPVNPRSAMTWHD--DVEMDLPGYQPQTAVDVDLIAAAAGLIRVAERPVLYVGGGILKARAADALRALAELTGISVVTTL 245          
BLAST of mRNA_M-pyrifera_M_contig121634.4447.1 vs. uniprot
Match: UPI001F446443 (acetolactate synthase large subunit n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001F446443)

HSP 1 Score: 270 bits (691), Expect = 3.520e-85
Identity = 140/177 (79.10%), Postives = 153/177 (86.44%), Query Frame = 1
Query:    1 VAMVTSGPAATNVVTPLADAFLDSVPMVCITGQVPYAAIGTDAFQECDTTGITMAVTKHNFLVTEAQDIPRIIHEAFHIATTGRPGPVLVDIPKDIVDPTNPRSAMHWYEATDADMELPGYHPVTQGDRELIRRAAEMIRDAERPVLYVGGGVLKARAAEALLELAEMVQIPVVTTL 531
            VAMVTSGPAATN+VTPL DA++DSVP+V ITGQVPYAAIGTDAFQECDTTGITM VTKHNFL+++AQDIPRII EAFHIATTGRPGPVLVD+PKDIVDP NPRSAM WY   + D  LPGY PVT GD E IRRAAE+I  AERPV+Y GGG+LKARAAE L ELAE+  I VVTTL
Sbjct:   75 VAMVTSGPAATNIVTPLCDAYMDSVPIVVITGQVPYAAIGTDAFQECDTTGITMPVTKHNFLISDAQDIPRIIREAFHIATTGRPGPVLVDVPKDIVDPKNPRSAMDWYWPEEVD--LPGYRPVTAGDPEAIRRAAELILAAERPVIYAGGGILKARAAEVLRELAELTGIHVVTTL 249          
BLAST of mRNA_M-pyrifera_M_contig121634.4447.1 vs. uniprot
Match: A0A6L7JNL2_9ACTN (Acetolactate synthase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6L7JNL2_9ACTN)

HSP 1 Score: 269 bits (688), Expect = 8.340e-85
Identity = 139/177 (78.53%), Postives = 153/177 (86.44%), Query Frame = 1
Query:    1 VAMVTSGPAATNVVTPLADAFLDSVPMVCITGQVPYAAIGTDAFQECDTTGITMAVTKHNFLVTEAQDIPRIIHEAFHIATTGRPGPVLVDIPKDIVDPTNPRSAMHWYEATDADMELPGYHPVTQGDRELIRRAAEMIRDAERPVLYVGGGVLKARAAEALLELAEMVQIPVVTTL 531
            VAMVTSGPAATN+VTPL DA++DS+PMV +TGQVPYAAIGTDAFQECDTTGITMAVTKHN+LVTEA DIP++IH+AFHIATTGRPGPVLVDIPKDIVDP NPRSAM W   T  D +LPGY P   GD E IR AA++I  AERPVLY GGG+LKARAAEALLELAE+  I VVTTL
Sbjct:   68 VAMVTSGPAATNIVTPLCDAYMDSIPMVVVTGQVPYAAIGTDAFQECDTTGITMAVTKHNYLVTEAADIPQVIHDAFHIATTGRPGPVLVDIPKDIVDPNNPRSAMEW--RTPKDHDLPGYSPNLHGDPEQIRHAAKLICAAERPVLYTGGGILKARAAEALLELAELTSIHVVTTL 242          
BLAST of mRNA_M-pyrifera_M_contig121634.4447.1 vs. uniprot
Match: A0A351IWJ3_9ACTN (Acetolactate synthase large subunit (Fragment) n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351IWJ3_9ACTN)

HSP 1 Score: 263 bits (672), Expect = 1.690e-84
Identity = 138/177 (77.97%), Postives = 153/177 (86.44%), Query Frame = 1
Query:    1 VAMVTSGPAATNVVTPLADAFLDSVPMVCITGQVPYAAIGTDAFQECDTTGITMAVTKHNFLVTEAQDIPRIIHEAFHIATTGRPGPVLVDIPKDIVDPTNPRSAMHWYEATDADMELPGYHPVTQGDRELIRRAAEMIRDAERPVLYVGGGVLKARAAEALLELAEMVQIPVVTTL 531
            VAMVTSGPAATN+VTPL DA++DSVPMV ITGQVP  AIGTDAFQECDTTGIT ++TKHNFLVTEAQDIPR I EAFHIATTGRPGPVLVDIPKDIVDP NPRSAM W +  D  ++LPGY+P T+ D E IR AAE+IR +ERPVLYVGGG+LKARAA+AL ELAE+  I VVTTL
Sbjct:   71 VAMVTSGPAATNIVTPLCDAYMDSVPMVVITGQVPTGAIGTDAFQECDTTGITQSITKHNFLVTEAQDIPRTIKEAFHIATTGRPGPVLVDIPKDIVDPGNPRSAMTWTD--DVTIDLPGYNPQTEVDPEAIRAAAELIRASERPVLYVGGGILKARAADALRELAELTGISVVTTL 245          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121634.4447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B1AX96_9ACTN1.540e-10391.53Acetolactate synthase n=1 Tax=Acidimicrobiaceae ba... [more]
A0A7X5WTW4_9ACTN7.500e-10290.40Acetolactate synthase n=1 Tax=Actinomycetia bacter... [more]
A0A3M2GFE8_ACTSX5.510e-9884.18Acetolactate synthase large subunit (Fragment) n=1... [more]
A0A7K2E680_9ACTN1.560e-9282.49Acetolactate synthase n=4 Tax=Acidimicrobiaceae ba... [more]
A0A2D8GFI5_9ACTN3.540e-9183.62Acetolactate synthase n=11 Tax=Acidimicrobiaceae b... [more]
A0A2E4SUW8_9ACTN5.460e-8679.66Acetolactate synthase n=2 Tax=root TaxID=1 RepID=A... [more]
A0A3D5K2J7_9ACTN2.810e-8578.53Acetolactate synthase (Fragment) n=1 Tax=Acidimicr... [more]
UPI001F4464433.520e-8579.10acetolactate synthase large subunit n=1 Tax=Rhabdo... [more]
A0A6L7JNL2_9ACTN8.340e-8578.53Acetolactate synthase n=1 Tax=Acidimicrobiia bacte... [more]
A0A351IWJ3_9ACTN1.690e-8477.97Acetolactate synthase large subunit (Fragment) n=2... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121634contigM-pyrifera_M_contig121634:2..532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score239.2
Seed ortholog evalue1.5e-60
Seed eggNOG ortholog1229780.BN381_80039
Preferred nameilvB
KEGG rclassRC00027,RC00106,RC01192,RC02744,RC02893
KEGG koko:K01652
KEGG ReactionR00006,R00014,R00226,R03050,R04672,R04673,R08648
KEGG Pathwayko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230
KEGG ModuleM00019,M00570
Hectar predicted targeting categoryother localisation
GOsGO:0000287,GO:0003674,GO:0003824,GO:0003984,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0006082,GO:0006520,GO:0006549,GO:0006573,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009097,GO:0009099,GO:0009987,GO:0016053,GO:0016740,GO:0016744,GO:0019752,GO:0019842,GO:0030312,GO:0030976,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0046872,GO:0048037,GO:0050662,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901681
EggNOG free text desc.Thiamine pyrophosphate enzyme, central domain
EggNOG OGs2GKU4@201174,3UWFJ@52018,COG0028@1,COG0028@2
EC2.2.1.6
COG Functional cat.H
BiGG ReactioniNJ661.Rv3003c
Best tax levelunclassified Actinobacteria (class)
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size531
Cds size525
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815735.6126227-CDS-M-pyrifera_M_contig121634:1..5261622815735.6126227-CDS-M-pyrifera_M_contig121634:1..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121634 2..526 -
1692277544.940802-CDS-M-pyrifera_M_contig121634:1..5261692277544.940802-CDS-M-pyrifera_M_contig121634:1..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121634 2..526 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815735.624216-UTR-M-pyrifera_M_contig121634:526..5321622815735.624216-UTR-M-pyrifera_M_contig121634:526..532Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121634 527..532 -
1692277544.9529748-UTR-M-pyrifera_M_contig121634:526..5321692277544.9529748-UTR-M-pyrifera_M_contig121634:526..532Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121634 527..532 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121634.4447.1prot_M-pyrifera_M_contig121634.4447.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121634 2..526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121634.4447.1

>prot_M-pyrifera_M_contig121634.4447.1 ID=prot_M-pyrifera_M_contig121634.4447.1|Name=mRNA_M-pyrifera_M_contig121634.4447.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=175bp
MVTSGPAATNVVTPLADAFLDSVPMVCITGQVPYAAIGTDAFQECDTTGI
TMAVTKHNFLVTEAQDIPRIIHEAFHIATTGRPGPVLVDIPKDIVDPTNP
RSAMHWYEATDADMELPGYHPVTQGDRELIRRAAEMIRDAERPVLYVGGG
VLKARAAEALLELAEMVQIPVVTTL
back to top

mRNA from alignment at M-pyrifera_M_contig121634:2..532-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121634.4447.1 ID=mRNA_M-pyrifera_M_contig121634.4447.1|Name=mRNA_M-pyrifera_M_contig121634.4447.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=531bp|location=Sequence derived from alignment at M-pyrifera_M_contig121634:2..532- (Macrocystis pyrifera P11B4 male)
GTCGCCATGGTCACCTCGGGTCCCGCCGCCACCAATGTCGTCACCCCGCT CGCCGATGCGTTCCTCGACTCGGTGCCGATGGTCTGCATCACCGGTCAGG TGCCCTACGCCGCGATCGGCACCGACGCCTTCCAGGAGTGCGACACGACG GGCATCACCATGGCCGTCACCAAGCACAACTTCCTGGTCACCGAGGCGCA GGACATCCCCCGCATCATCCACGAGGCGTTCCACATCGCGACGACGGGCC GTCCCGGCCCCGTGCTCGTCGACATTCCAAAGGACATCGTCGACCCCACC AACCCCCGGTCGGCGATGCACTGGTACGAGGCGACCGACGCCGACATGGA GCTCCCCGGCTATCACCCGGTCACCCAGGGCGATCGCGAGCTGATCCGCC GCGCCGCGGAGATGATCCGCGACGCTGAACGTCCCGTCCTCTATGTCGGC GGCGGTGTGCTGAAGGCCCGTGCCGCTGAGGCCCTGCTCGAGCTCGCCGA GATGGTCCAGATTCCGGTGGTCACCACCCTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig121634:2..532-

>mRNA_M-pyrifera_M_contig121634.4447.1 ID=mRNA_M-pyrifera_M_contig121634.4447.1|Name=mRNA_M-pyrifera_M_contig121634.4447.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1050bp|location=Sequence derived from alignment at M-pyrifera_M_contig121634:2..532- (Macrocystis pyrifera P11B4 male)
ATGGTCACCTCGGGTCCCGCCGCCACCAATGTCGTCACCCCGCTCGCCGA
TGCGTTCCTCGACTCGGTGCCGATGGTCTGCATCACCGGTCAGGTGCCCT
ACGCCGCGATCGGCACCGACGCCTTCCAGGAGTGCGACACGACGGGCATC
ACCATGGCCGTCACCAAGCACAACTTCCTGGTCACCGAGGCGCAGGACAT
CCCCCGCATCATCCACGAGGCGTTCCACATCGCGACGACGGGCCGTCCCG
GCCCCGTGCTCGTCGACATTCCAAAGGACATCGTCGACCCCACCAACCCC
CGGTCGGCGATGCACTGGTACGAGGCGACCGACGCCGACATGGAGCTCCC
CGGCTATCACCCGGTCACCCAGGGCGATCGCGAGCTGATCCGCCGCGCCG
CGGAGATGATCCGCGACGCTGAACGTCCCGTCCTCTATGTCGGCGGCGGT
GTGCTGAAGGCCCGTGCCGCTGAGGCCCTGCTCGAGCTCGCCGAGATGGT
CCAGATTCCGGTGGTCACCACCCTCATGGTCACCTCGGGTCCCGCCGCCA
CCAATGTCGTCACCCCGCTCGCCGATGCGTTCCTCGACTCGGTGCCGATG
GTCTGCATCACCGGTCAGGTGCCCTACGCCGCGATCGGCACCGACGCCTT
CCAGGAGTGCGACACGACGGGCATCACCATGGCCGTCACCAAGCACAACT
TCCTGGTCACCGAGGCGCAGGACATCCCCCGCATCATCCACGAGGCGTTC
CACATCGCGACGACGGGCCGTCCCGGCCCCGTGCTCGTCGACATTCCAAA
GGACATCGTCGACCCCACCAACCCCCGGTCGGCGATGCACTGGTACGAGG
CGACCGACGCCGACATGGAGCTCCCCGGCTATCACCCGGTCACCCAGGGC
GATCGCGAGCTGATCCGCCGCGCCGCGGAGATGATCCGCGACGCTGAACG
TCCCGTCCTCTATGTCGGCGGCGGTGTGCTGAAGGCCCGTGCCGCTGAGG
CCCTGCTCGAGCTCGCCGAGATGGTCCAGATTCCGGTGGTCACCACCCTC
back to top