mRNA_M-pyrifera_M_contig121587.4436.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121587.4436.1
Unique NamemRNA_M-pyrifera_M_contig121587.4436.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121587.4436.1 vs. uniprot
Match: UPI0016006FD1 (uncharacterized protein LOC118403890 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016006FD1)

HSP 1 Score: 113 bits (283), Expect = 2.600e-29
Identity = 64/144 (44.44%), Postives = 82/144 (56.94%), Query Frame = 1
Query:    1 AHLCLFWPNQRGSLTSFNKAEATDCGLQTGPCGQRETGPIAGHSMTV---GYNNTITFQKNQNHYNATSPGNFTVAIAYRNNPQRQSDFFHLASIPDTDTPALTMYTLPVELPNPILRH--GVLQVAYNTNN--SPGTFYQCAD 411
            AHLCL  P QRGS+   NK  + DCGL TGPCGQR   P    +  V   G   T+T QKN +HY+++SPG FT++      P R+  F  L  IPD   P+LT+Y++ + +P P      G LQ AY T N  +P  FYQC D
Sbjct:   16 AHLCLISPPQRGSMFDINKPASPDCGLTTGPCGQR---PALNKTTVVFLSGSRYTVTIQKNLDHYDSSSPGEFTISFR----PSRKGGFTLLEKIPDNGEPSLTLYSVNITIPKPTAHSDIGTLQAAYVTRNPQAPPVFYQCTD 152          
BLAST of mRNA_M-pyrifera_M_contig121587.4436.1 vs. uniprot
Match: UPI001600A551 (uncharacterized protein LOC118403642 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001600A551)

HSP 1 Score: 104 bits (260), Expect = 7.670e-26
Identity = 59/144 (40.97%), Postives = 80/144 (55.56%), Query Frame = 1
Query:    1 AHLCLFWPNQRGSLTSFNKAEATDCGLQTGPCGQRETGPI-AGHSMTVGYNNTITFQKNQNHYNATSPGNFTVAIAYRNNPQRQSDFFHLASIPDTDTPALTMYTLPVELPNPI-LRHGVLQVAYNTNNSPGT--FYQCADINL 420
            AH+CL  P+QRGS+T  NK  + DCGL +GPCGQR   P  A  +   G + T+T QKN +HYN +SPG FT++        R   F  L  IPD   P+LT+Y++ + +P         +QVAY T N      +YQC D  +
Sbjct:   16 AHMCLISPHQRGSMTGINKPGSPDCGLTSGPCGQRPAPPKKATIAFLTGTSQTVTIQKNLDHYNPSSPGEFTISFR----AGRTGKFTPLEKIPDNGEPSLTLYSVNITIPKFTGALINTIQVAYITRNPQAAPVYYQCTDFYI 155          
BLAST of mRNA_M-pyrifera_M_contig121587.4436.1 vs. uniprot
Match: A0A8J9YV38_BRALA (Hypp6524 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9YV38_BRALA)

HSP 1 Score: 103 bits (256), Expect = 3.510e-25
Identity = 59/146 (40.41%), Postives = 78/146 (53.42%), Query Frame = 1
Query:    1 AHLCLFWPNQRGSLTSFNK------AEATDCGLQTGPCGQRETGPIAGHSMTVGYNNTITFQKNQNHYNATSPGNFTVAIAYRNNPQRQSDFFHLASIPDTDTPALTMYTLPVELPNPI-LRHGVLQVAYNTNN--SPGTFYQCAD 411
            AH+C+  P QRGS+T  NK      A   DCGL TGPCG R        ++  G   T+T QKN +HY++ SPG FT++           DF  L  IPD   P+LT+Y++ + +P P+    G LQ  Y T N  +P  FYQC D
Sbjct:   16 AHMCMISPPQRGSMTGINKPADCFVAACPDCGLVTGPCGLRPEPNKTTLALLAGSQYTVTIQKNLDHYDSASPGEFTISFR----AGMTGDFTLLQKIPDIGEPSLTLYSVNITIPKPVGSDKGTLQAVYVTRNPQAPPMFYQCTD 157          
BLAST of mRNA_M-pyrifera_M_contig121587.4436.1 vs. uniprot
Match: B3S475_TRIAD (Uncharacterized protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3S475_TRIAD)

HSP 1 Score: 97.4 bits (241), Expect = 6.000e-23
Identity = 62/148 (41.89%), Postives = 82/148 (55.41%), Query Frame = 1
Query:    1 AHLCLFWPNQRGSLTSFNKAEATDCGLQTGPCG----QRETGPIAGHSMTVGYNNTITFQKNQNHY-NATSPGNFTVAIAY-RNNPQRQSDFFHLASIPDTDTPALTMYTLPVELPNPILRHGVLQVAYNTNNS--PGTFYQCADINL 420
            +H+CL  P QRGSL   NKA +  C   TGPCG     + T  IAG S       T+ FQKN NH+ N    G F +++   ++       F HLAS+PDT+TP+L +YT  V +P       V+QV Y T+NS  P  FYQC+DI +
Sbjct:   19 SHICLLSPRQRGSLRGINKAASDSCIRLTGPCGGQKAMKPTVTIAGGSKY-----TVVFQKNLNHWANGAMHGMFNISLGMVKSGKVEPHSFTHLASVPDTNTPSLWIYTQDVMIPKKS-GSAVIQVIYVTDNSKAPAMFYQCSDIMI 160          
BLAST of mRNA_M-pyrifera_M_contig121587.4436.1 vs. uniprot
Match: C3XSB7_BRAFL (Uncharacterized protein n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3XSB7_BRAFL)

HSP 1 Score: 93.6 bits (231), Expect = 3.340e-20
Identity = 48/112 (42.86%), Postives = 65/112 (58.04%), Query Frame = 1
Query:    1 AHLCLFWPNQRGSLTSFNKAEATDCGLQTGPCGQRETGPI-AGHSMTVGYNNTITFQKNQNHYNATSPGNFTVAIAYRNNPQRQSDFFHLASIPDTDTPALTMYTLPVELPN 333
            AH+CL  P+QRGS+   NK  + DCGL +GPCGQR   P  A  +   G   T+T QKN +HYN +SPG  T++        R   F  L  IPD   P+LT+Y++ + +PN
Sbjct:   16 AHMCLISPHQRGSMAGINKPGSPDCGLTSGPCGQRPAPPKKATKAFLTGTPQTVTIQKNLDHYNPSSPGEITISFR----AGRTGKFTLLEKIPDNGEPSLTLYSVNITIPN 123          
BLAST of mRNA_M-pyrifera_M_contig121587.4436.1 vs. uniprot
Match: A0A3S0ZX49_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S0ZX49_ELYCH)

HSP 1 Score: 90.1 bits (222), Expect = 1.380e-19
Identity = 53/144 (36.81%), Postives = 84/144 (58.33%), Query Frame = 1
Query:    4 HLCLFWPNQRGSLTSFNKAEATDCGLQTGPCGQRETGPIAGHSMTVGYNNTITFQKNQNHYNATSPGNFTVAIAYRNNPQRQ-SDFFHLASIPDTDTPALTMY----TLPVELPNPILRHGVLQVAYNTNNSPGT--FYQCADI 414
            H+CL  P QRGS+   N+ ++ DC L   PCG R+  P +   +TVG    +T+QKN +H+N+++PG F+V +   ++P+   S+  H   +PD+  PALT+Y    T+P + P P    G+LQ+ Y   N      +YQC+D+
Sbjct:   19 HICLLSPPQRGSMVGINQEDSDDCLLYQAPCGGRD--PQSPLILTVGQRFVVTWQKNVDHFNSSTPGYFSVLVLDADHPESAGSEILH---VPDSPDPALTLYWGNVTVP-DTPGP----GILQLRYYITNQDSALIYYQCSDV 152          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121587.4436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
UPI0016006FD12.600e-2944.44uncharacterized protein LOC118403890 n=1 Tax=Branc... [more]
UPI001600A5517.670e-2640.97uncharacterized protein LOC118403642 n=1 Tax=Branc... [more]
A0A8J9YV38_BRALA3.510e-2540.41Hypp6524 protein n=1 Tax=Branchiostoma lanceolatum... [more]
B3S475_TRIAD6.000e-2341.89Uncharacterized protein n=2 Tax=Trichoplax TaxID=1... [more]
C3XSB7_BRAFL3.340e-2042.86Uncharacterized protein n=2 Tax=Branchiostoma flor... [more]
A0A3S0ZX49_ELYCH1.380e-1936.81Uncharacterized protein n=1 Tax=Elysia chlorotica ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121587contigM-pyrifera_M_contig121587:97..528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score99.4
Seed ortholog evalue1.5e-18
Seed eggNOG ortholog6500.XP_005110372.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2DI7Z@1,2S5Y2@2759,3A72E@33154,3BTE9@33208,3DAKR@33213
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size432
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815734.7311745-CDS-M-pyrifera_M_contig121587:96..5281622815734.7311745-CDS-M-pyrifera_M_contig121587:96..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121587 97..528 -
1692277544.5050013-CDS-M-pyrifera_M_contig121587:96..5281692277544.5050013-CDS-M-pyrifera_M_contig121587:96..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121587 97..528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121587.4436.1prot_M-pyrifera_M_contig121587.4436.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121587 97..528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121587.4436.1

>prot_M-pyrifera_M_contig121587.4436.1 ID=prot_M-pyrifera_M_contig121587.4436.1|Name=mRNA_M-pyrifera_M_contig121587.4436.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
AHLCLFWPNQRGSLTSFNKAEATDCGLQTGPCGQRETGPIAGHSMTVGYN
NTITFQKNQNHYNATSPGNFTVAIAYRNNPQRQSDFFHLASIPDTDTPAL
TMYTLPVELPNPILRHGVLQVAYNTNNSPGTFYQCADINLRGFP
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mRNA from alignment at M-pyrifera_M_contig121587:97..528-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121587.4436.1 ID=mRNA_M-pyrifera_M_contig121587.4436.1|Name=mRNA_M-pyrifera_M_contig121587.4436.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig121587:97..528- (Macrocystis pyrifera P11B4 male)
GCGCACCTCTGCCTGTTTTGGCCCAACCAGCGTGGCTCTCTGACAAGCTT CAACAAGGCAGAGGCAACCGACTGCGGTTTGCAGACGGGTCCTTGTGGCC AGAGGGAGACAGGCCCCATTGCCGGCCACAGCATGACTGTCGGGTACAAC AACACCATCACCTTCCAGAAGAACCAGAACCACTACAACGCCACTAGCCC AGGCAACTTCACAGTTGCTATTGCATACAGGAACAACCCCCAGCGCCAGT CTGACTTCTTCCACCTCGCAAGTATCCCTGATACCGACACTCCAGCACTG ACAATGTACACTCTCCCCGTCGAGCTTCCCAACCCAATCCTCCGCCACGG AGTTCTCCAGGTGGCGTACAACACCAACAACAGCCCCGGAACCTTCTACC AGTGCGCTGATATCAACCTCCGCGGCTTCCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121587:97..528-

>mRNA_M-pyrifera_M_contig121587.4436.1 ID=mRNA_M-pyrifera_M_contig121587.4436.1|Name=mRNA_M-pyrifera_M_contig121587.4436.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig121587:97..528- (Macrocystis pyrifera P11B4 male)
GCGCACCTCTGCCTGTTTTGGCCCAACCAGCGTGGCTCTCTGACAAGCTT
CAACAAGGCAGAGGCAACCGACTGCGGTTTGCAGACGGGTCCTTGTGGCC
AGAGGGAGACAGGCCCCATTGCCGGCCACAGCATGACTGTCGGGTACAAC
AACACCATCACCTTCCAGAAGAACCAGAACCACTACAACGCCACTAGCCC
AGGCAACTTCACAGTTGCTATTGCATACAGGAACAACCCCCAGCGCCAGT
CTGACTTCTTCCACCTCGCAAGTATCCCTGATACCGACACTCCAGCACTG
ACAATGTACACTCTCCCCGTCGAGCTTCCCAACCCAATCCTCCGCCACGG
AGTTCTCCAGGTGGCGTACAACACCAACAACAGCCCCGGAACCTTCTACC
AGTGCGCTGATATCAACCTCCGCGGCTTCCCTGCGCACCTCTGCCTGTTT
TGGCCCAACCAGCGTGGCTCTCTGACAAGCTTCAACAAGGCAGAGGCAAC
CGACTGCGGTTTGCAGACGGGTCCTTGTGGCCAGAGGGAGACAGGCCCCA
TTGCCGGCCACAGCATGACTGTCGGGTACAACAACACCATCACCTTCCAG
AAGAACCAGAACCACTACAACGCCACTAGCCCAGGCAACTTCACAGTTGC
TATTGCATACAGGAACAACCCCCAGCGCCAGTCTGACTTCTTCCACCTCG
CAAGTATCCCTGATACCGACACTCCAGCACTGACAATGTACACTCTCCCC
GTCGAGCTTCCCAACCCAATCCTCCGCCACGGAGTTCTCCAGGTGGCGTA
CAACACCAACAACAGCCCCGGAACCTTCTACCAGTGCGCTGATATCAACC
TCCGCGGCTTCCCT
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