mRNA_M-pyrifera_M_contig121577.4433.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121577.4433.1
Unique NamemRNA_M-pyrifera_M_contig121577.4433.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121577.4433.1 vs. uniprot
Match: A0A6L7XJW2_9PROT (Cyclase family protein n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A6L7XJW2_9PROT)

HSP 1 Score: 272 bits (696), Expect = 1.000e-88
Identity = 120/161 (74.53%), Postives = 136/161 (84.47%), Query Frame = 1
Query:    1 GYPITMDDYRAALKQAGIADAGPGDVVLFRTGWNDLWRNNLEKAAAEAAADNARFNAGGPGVSPEVCDHLASRKIAMMGADNWGIEPYDFTGEGEWPTPIPELEEWAYCHMNLSARRGIDLFENLDLKELGERGPGEFLFSWAPLKLVGATGSPGNPIAVW 483
            GYPITMDDY AAL   GIADAG GDVVL RTGWND+WR+N      EA A+NA FNAGGPG++P+VCDHLA +KIAM+GADNWGIEPYDF G+G+WPTP  E+++WAYCHMNLS RRGI LFENLDLK+LGE    EFLFSWAPLKLVGATG+PGNPIA +
Sbjct:  213 GYPITMDDYNAALAAQGIADAGQGDVVLVRTGWNDIWRDNHNLPTGEAIANNAAFNAGGPGIAPDVCDHLAGKKIAMLGADNWGIEPYDFAGQGDWPTPFAEVKDWAYCHMNLSVRRGIYLFENLDLKQLGEDQAYEFLFSWAPLKLVGATGAPGNPIAAY 373          
BLAST of mRNA_M-pyrifera_M_contig121577.4433.1 vs. uniprot
Match: A0A2E6QKS7_9PROT (Cyclase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6QKS7_9PROT)

HSP 1 Score: 260 bits (664), Expect = 6.360e-84
Identity = 112/161 (69.57%), Postives = 136/161 (84.47%), Query Frame = 1
Query:    1 GYPITMDDYRAALKQAGIADAGPGDVVLFRTGWNDLWRNNLEKAAAEAAADNARFNAGGPGVSPEVCDHLASRKIAMMGADNWGIEPYDFTGEGEWPTPIPELEEWAYCHMNLSARRGIDLFENLDLKELGERGPGEFLFSWAPLKLVGATGSPGNPIAVW 483
            GYPIT++DY+AAL+  GI DAG GDVVL RTGWNDLWR+N+EK+  +A ADNA FN+GGPG SPE+CD+LA RKIAM+G DNWGIEPYDF  +G++PTP  E+ +W +CHMN++ RRGI LFENLDLK++G+    EFLFSWAPLKLVGATGSPGNPIA +
Sbjct:  210 GYPITVEDYKAALEAQGIEDAGQGDVVLIRTGWNDLWRDNMEKSQDQAMADNAEFNSGGPGASPELCDYLAERKIAMLGMDNWGIEPYDFGSKGDYPTPFAEVADWGHCHMNMTVRRGIYLFENLDLKQIGDDDAHEFLFSWAPLKLVGATGSPGNPIAAY 370          
BLAST of mRNA_M-pyrifera_M_contig121577.4433.1 vs. uniprot
Match: A0A7V3UHV8_9BACT (Cyclase family protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V3UHV8_9BACT)

HSP 1 Score: 206 bits (523), Expect = 7.900e-63
Identity = 98/161 (60.87%), Postives = 119/161 (73.91%), Query Frame = 1
Query:    1 GYPITMDDYRAALKQAGIADAGPGDVVLFRTGWNDLWRNNLEKAAAEAAADNARFNAGGPGVSPEVCDHLASRKIAMMGADNWGIEPYDFTGEGEWPTPIPELEEWAYCHMNLSARRGIDLFENLDLKELGERGPGEFLFSWAPLKLVGATGSPGNPIAVW 483
            GY IT+ DY+AAL++ GI DA  GDVVLFRTGW+ LW +   K   + A DNA F +G PGV+PEVCDHLA +KI+M+G+D WG+EPYDF      P P P    +AYCHMNL ARRGI  FENL+L+E+ +    EFLF+W+PLKLVGATGSPGNPIA W
Sbjct:  203 GYVITLADYKAALQKQGIQDASQGDVVLFRTGWSQLWID-YNKPPDQRAKDNAEFGSGEPGVAPEVCDHLAGKKISMIGSDTWGLEPYDFAKN---PAPEP----FAYCHMNLVARRGITNFENLNLEEVSKEKAYEFLFAWSPLKLVGATGSPGNPIAAW 355          
BLAST of mRNA_M-pyrifera_M_contig121577.4433.1 vs. uniprot
Match: W4MEG5_9BACT (Uncharacterized protein n=1 Tax=Candidatus Entotheonella gemina TaxID=1429439 RepID=W4MEG5_9BACT)

HSP 1 Score: 200 bits (509), Expect = 9.560e-61
Identity = 97/161 (60.25%), Postives = 113/161 (70.19%), Query Frame = 1
Query:    1 GYPITMDDYRAALKQAGIADAGPGDVVLFRTGWNDLWRNNLEKAAAEAAADNARFNAGGPGVSPEVCDHLASRKIAMMGADNWGIEPYDFTGEGEWPTPIPELEEWAYCHMNLSARRGIDLFENLDLKELGERGPGEFLFSWAPLKLVGATGSPGNPIAVW 483
            GY IT+DDY+AALK  GI DA  GDVVLFRTGW+  W  N E   AE AA NA   +G PGVSPE+CD+L  +KI+M+G+D WG+EPYDF+            E +AYCH+NL  R GI  FENLDL  L +    EFLFSW+PLKLVGATGSPGNPIAVW
Sbjct:  202 GYSITLDDYKAALKAQGIDDASAGDVVLFRTGWSSKW-GNPELTPAEHAAINAEVGSGEPGVSPEICDYLIEKKISMIGSDTWGLEPYDFSKGAP--------ESFAYCHINLMVRHGITNFENLDLSVLSKEKAYEFLFSWSPLKLVGATGSPGNPIAVW 353          
BLAST of mRNA_M-pyrifera_M_contig121577.4433.1 vs. uniprot
Match: UPI0019B29C75 (Cyclase family protein n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI0019B29C75)

HSP 1 Score: 174 bits (440), Expect = 2.270e-50
Identity = 88/169 (52.07%), Postives = 107/169 (63.31%), Query Frame = 1
Query:    1 GYPITMDDYRAALKQAGIADAGPGDVVLFRTGWNDLWRNN--------LEKAAAEAAADNARFNAGGPGVSPEVCDHLASRKIAMMGADNWGIEPYDFTGEGEWPTPIPELEEWAYCHMNLSARRGIDLFENLDLKELGERGPGEFLFSWAPLKLVGATGSPGNPIAVW 483
            GY IT+ DY+AAL++ GI DAGPGDVVL RTGWN LW+ N          K+  + A D      G  G  PE+CD LA++KI+M+G+D W +E +        P   PE     YCHMNL  RRGI  FENLDL +L E    EFLF+WAPLKLVGATGSPGNP+A +
Sbjct:  197 GYAITVADYKAALQRQGIQDAGPGDVVLIRTGWNSLWKTNHLGRPAGDKVKSDEQLAKDLIEAGDGEAGAHPELCDFLATKKISMIGSDTWALEAF--------PPVYPEST--VYCHMNLLVRRGITNFENLDLDQLSEDKAYEFLFTWAPLKLVGATGSPGNPLAAY 355          
BLAST of mRNA_M-pyrifera_M_contig121577.4433.1 vs. uniprot
Match: A0A1Q7ZHQ7_9CYAN (Uncharacterized protein n=1 Tax=Cyanobacteria bacterium 13_1_40CM_2_61_4 TaxID=1805101 RepID=A0A1Q7ZHQ7_9CYAN)

HSP 1 Score: 130 bits (328), Expect = 1.480e-35
Identity = 70/161 (43.48%), Postives = 93/161 (57.76%), Query Frame = 1
Query:   10 ITMDDYRAALKQAGIADAGPGDVVLFRTGWNDLWRNNLEKA--AAEAAADNARFNAGGPGVSPEVCDHLASRKIAMMGADNWGIEPYDFTGEGEWPTPIPELEEWAY-CHMNLSARRGIDLFENLDLKELGERGPGEFLFSWAPLKLVGATGSPGNPIAVW 483
            IT  D +A +K+ G+A+ G GD V   TG  DLW N   K+  A E A   A F +G PG     C++LASRKIA++G D    +            P+ E E++A  CH  +  RRGI   EN+D  EL +    EFLF WAPLK++GATGSPGNP+A++
Sbjct:   30 ITAADVQAMVKRQGLAEIGEGDCVFLYTGHGDLWSNAEWKSLSAEEKAKRRAEFTSGEPGFGISACEYLASRKIALLGGDTSANDAQ----------PVGEQEDYAVPCHTEMQTRRGIWNLENMDFGELLKDNVTEFLFVWAPLKIIGATGSPGNPVALY 180          
BLAST of mRNA_M-pyrifera_M_contig121577.4433.1 vs. uniprot
Match: A0A523LLQ1_9GAMM (Cyclase family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523LLQ1_9GAMM)

HSP 1 Score: 134 bits (336), Expect = 6.060e-35
Identity = 72/160 (45.00%), Postives = 90/160 (56.25%), Query Frame = 1
Query:   10 ITMDDYRAALKQAGIADAGPGDVVLFRTGWNDLWRNNLEKA--AAEAAADNARFNAGGPGVSPEVCDHLASRKIAMMGADNWGIEPYDFTGEGEWPTPIPELEEWAYCHMNLSARRGIDLFENLDLKELGERGPGEFLFSWAPLKLVGATGSPGNPIAVW 483
            +T DD +A +++ GI   G GD V   TG  ++W  +      AAE A     FNAG PG     C++LASRKI + GAD+W  E       GE P P         CH+ L  +RGI   ENLDL +L E    EFLF WAPLKL GATGSPGNP+A++
Sbjct:  199 VTDDDVKAMVEKQGIDPIGEGDCVFLYTGHGNIWHPSDWDTFDAAEKARRREAFNAGSPGFGLSACEYLASRKIILTGADSWPTEAVGPNFAGEGPQPFE-------CHLKLQTKRGIWNIENLDLTQLVEDKAYEFLFVWAPLKLKGATGSPGNPVALY 351          
BLAST of mRNA_M-pyrifera_M_contig121577.4433.1 vs. uniprot
Match: A0A7C2LUF8_9HYPH (Cyclase family protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2LUF8_9HYPH)

HSP 1 Score: 134 bits (336), Expect = 6.180e-35
Identity = 71/160 (44.38%), Postives = 89/160 (55.62%), Query Frame = 1
Query:   10 ITMDDYRAALKQAGIADAGPGDVVLFRTGWNDLW--RNNLEKAAAEAAADNARFNAGGPGVSPEVCDHLASRKIAMMGADNWGIEPYDFTGEGEWPTPIPELEEWAYCHMNLSARRGIDLFENLDLKELGERGPGEFLFSWAPLKLVGATGSPGNPIAVW 483
            +T  D    +K+ GIA  G GD V   TG  D+W  +N     AAE A   A+FNAG PG     C++LA RKI + GAD W +E       GE P P         CH+ L  +RGI   ENLDL +L      EFLF W+PLK+ GATGSPGNP+A++
Sbjct:  200 VTAKDVEEMVKRQGIAPIGAGDCVFLHTGHGDIWHPKNWDTFDAAEKAKRVAQFNAGEPGFGISACEYLAERKIILTGADQWAVEAVGKDAGGENPQPFE-------CHIKLQTKRGIWNLENLDLSQLVADKAYEFLFVWSPLKMKGATGSPGNPVALY 352          
BLAST of mRNA_M-pyrifera_M_contig121577.4433.1 vs. uniprot
Match: UPI00196A6361 (cyclase family protein n=1 Tax=Acuticoccus kandeliae TaxID=2073160 RepID=UPI00196A6361)

HSP 1 Score: 132 bits (332), Expect = 9.030e-35
Identity = 72/160 (45.00%), Postives = 90/160 (56.25%), Query Frame = 1
Query:   10 ITMDDYRAALKQAGIADAGPGDVVLFRTGWNDLWR-NNLEKA-AAEAAADNARFNAGGPGVSPEVCDHLASRKIAMMGADNWGIEPYDFTGEGEWPTPIPELEEWAYCHMNLSARRGIDLFENLDLKELGERGPGEFLFSWAPLKLVGATGSPGNPIAVW 483
            IT DD  A +K  GIA  G GD V   TG  D+W  ++ +K  A E     A+FN+G PG     C++LA RKI + GAD W +E            P    ++   CHM L  RRGI   ENLDL +L   G  EFLF WAPLK+ GATGSPGNP+A++
Sbjct:  156 ITGDDIEAMVKAQGIAPIGEGDCVFLYTGHGDIWHPSDWDKFDAVEKGERVAQFNSGEPGFGISGCEYLAERKIILTGADTWAVEA----------VPGENADKPFECHMQLQTRRGIWNIENLDLSQLVADGAHEFLFVWAPLKMKGATGSPGNPVALY 305          
BLAST of mRNA_M-pyrifera_M_contig121577.4433.1 vs. uniprot
Match: A0A7Y3GXN5_9DELT (Cyclase family protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y3GXN5_9DELT)

HSP 1 Score: 126 bits (317), Expect = 8.200e-34
Identity = 65/159 (40.88%), Postives = 87/159 (54.72%), Query Frame = 1
Query:   10 ITMDDYRAALKQAGI--ADAGPGDVVLFRTGWNDLWRNNLEKAAAEAAADNARFNAGGPGVSPEVCDHLASRKIAMMGADNWGIEPYDFTGEGEWPTPIPELEEWAYCHMNLSARRGIDLFENLDLKELGERGPGEFLFSWAPLKLVGATGSPGNPIAV 480
            I++DD RAAL + G+   D  PGD + + TGW +LW+            DN RFN+G PG+SP   D + S+K+ ++G DNWG+E            P P+ + +A  H       GI + ENLD  EL E G   F FS+APL L GATGSP  P A+
Sbjct:   49 ISVDDIRAALARQGLEEGDIRPGDALFYNTGWGELWK-----------VDNDRFNSGTPGLSPAAGDWVVSKKVVLVGTDNWGVEAI----------PQPKGDLFAPNHQKFLVENGIYIIENLDFSELVEAGTWRFAFSFAPLPLKGATGSPARPFAI 186          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121577.4433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L7XJW2_9PROT1.000e-8874.53Cyclase family protein n=1 Tax=Rhodospirillales ba... [more]
A0A2E6QKS7_9PROT6.360e-8469.57Cyclase n=1 Tax=Rhodospirillaceae bacterium TaxID=... [more]
A0A7V3UHV8_9BACT7.900e-6360.87Cyclase family protein n=1 Tax=bacterium TaxID=186... [more]
W4MEG5_9BACT9.560e-6160.25Uncharacterized protein n=1 Tax=Candidatus Entothe... [more]
UPI0019B29C752.270e-5052.07Cyclase family protein n=1 Tax=Prolixibacteraceae ... [more]
A0A1Q7ZHQ7_9CYAN1.480e-3543.48Uncharacterized protein n=1 Tax=Cyanobacteria bact... [more]
A0A523LLQ1_9GAMM6.060e-3545.00Cyclase family protein n=1 Tax=Gammaproteobacteria... [more]
A0A7C2LUF8_9HYPH6.180e-3544.38Cyclase family protein n=1 Tax=Hyphomicrobiales ba... [more]
UPI00196A63619.030e-3545.00cyclase family protein n=1 Tax=Acuticoccus kandeli... [more]
A0A7Y3GXN5_9DELT8.200e-3440.88Cyclase family protein n=1 Tax=Myxococcales bacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121577contigM-pyrifera_M_contig121577:46..531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score121.3
Seed ortholog evalue4e-25
Seed eggNOG ortholog565045.NOR51B_476
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Putative cyclase
EggNOG OGs1JB4N@118884,1MVWU@1224,1RQSC@1236,COG1878@1,COG1878@2
COG Functional cat.S
Best tax levelunclassified Gammaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size486
Cds size471
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815734.4544327-CDS-M-pyrifera_M_contig121577:45..5161622815734.4544327-CDS-M-pyrifera_M_contig121577:45..516Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121577 46..516 -
1692277544.3188438-CDS-M-pyrifera_M_contig121577:45..5161692277544.3188438-CDS-M-pyrifera_M_contig121577:45..516Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121577 46..516 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815734.471695-UTR-M-pyrifera_M_contig121577:516..5311622815734.471695-UTR-M-pyrifera_M_contig121577:516..531Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121577 517..531 -
1692277544.3293574-UTR-M-pyrifera_M_contig121577:516..5311692277544.3293574-UTR-M-pyrifera_M_contig121577:516..531Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121577 517..531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121577.4433.1prot_M-pyrifera_M_contig121577.4433.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121577 46..516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121577.4433.1

>prot_M-pyrifera_M_contig121577.4433.1 ID=prot_M-pyrifera_M_contig121577.4433.1|Name=mRNA_M-pyrifera_M_contig121577.4433.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=157bp
MDDYRAALKQAGIADAGPGDVVLFRTGWNDLWRNNLEKAAAEAAADNARF
NAGGPGVSPEVCDHLASRKIAMMGADNWGIEPYDFTGEGEWPTPIPELEE
WAYCHMNLSARRGIDLFENLDLKELGERGPGEFLFSWAPLKLVGATGSPG
NPIAVW*
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mRNA from alignment at M-pyrifera_M_contig121577:46..531-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121577.4433.1 ID=mRNA_M-pyrifera_M_contig121577.4433.1|Name=mRNA_M-pyrifera_M_contig121577.4433.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig121577:46..531- (Macrocystis pyrifera P11B4 male)
GGTTACCCGATCACGATGGACGACTATCGCGCCGCGCTGAAGCAGGCGGG CATCGCCGATGCCGGGCCCGGCGACGTCGTGCTGTTCCGCACCGGCTGGA ACGATCTGTGGCGCAACAACCTCGAGAAAGCCGCGGCCGAAGCCGCGGCC GACAACGCACGCTTCAATGCCGGCGGGCCCGGGGTCTCGCCCGAGGTGTG CGATCATCTCGCGAGTCGCAAGATCGCAATGATGGGCGCGGACAACTGGG GTATCGAACCGTACGATTTCACCGGCGAGGGCGAATGGCCGACCCCAATC CCGGAGCTTGAGGAGTGGGCGTATTGCCACATGAACCTGTCGGCGCGGCG CGGCATCGACCTGTTCGAGAACCTCGACCTGAAAGAACTCGGCGAGCGCG GGCCCGGTGAGTTCCTGTTCAGCTGGGCACCGTTGAAACTCGTCGGCGCA ACCGGCTCGCCGGGCAATCCGATCGCCGTGTGGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121577:46..531-

>mRNA_M-pyrifera_M_contig121577.4433.1 ID=mRNA_M-pyrifera_M_contig121577.4433.1|Name=mRNA_M-pyrifera_M_contig121577.4433.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=942bp|location=Sequence derived from alignment at M-pyrifera_M_contig121577:46..531- (Macrocystis pyrifera P11B4 male)
ATGGACGACTATCGCGCCGCGCTGAAGCAGGCGGGCATCGCCGATGCCGG
GCCCGGCGACGTCGTGCTGTTCCGCACCGGCTGGAACGATCTGTGGCGCA
ACAACCTCGAGAAAGCCGCGGCCGAAGCCGCGGCCGACAACGCACGCTTC
AATGCCGGCGGGCCCGGGGTCTCGCCCGAGGTGTGCGATCATCTCGCGAG
TCGCAAGATCGCAATGATGGGCGCGGACAACTGGGGTATCGAACCGTACG
ATTTCACCGGCGAGGGCGAATGGCCGACCCCAATCCCGGAGCTTGAGGAG
TGGGCGTATTGCCACATGAACCTGTCGGCGCGGCGCGGCATCGACCTGTT
CGAGAACCTCGACCTGAAAGAACTCGGCGAGCGCGGGCCCGGTGAGTTCC
TGTTCAGCTGGGCACCGTTGAAACTCGTCGGCGCAACCGGCTCGCCGGGC
AATCCGATCGCCGTGTGGTAAATGGACGACTATCGCGCCGCGCTGAAGCA
GGCGGGCATCGCCGATGCCGGGCCCGGCGACGTCGTGCTGTTCCGCACCG
GCTGGAACGATCTGTGGCGCAACAACCTCGAGAAAGCCGCGGCCGAAGCC
GCGGCCGACAACGCACGCTTCAATGCCGGCGGGCCCGGGGTCTCGCCCGA
GGTGTGCGATCATCTCGCGAGTCGCAAGATCGCAATGATGGGCGCGGACA
ACTGGGGTATCGAACCGTACGATTTCACCGGCGAGGGCGAATGGCCGACC
CCAATCCCGGAGCTTGAGGAGTGGGCGTATTGCCACATGAACCTGTCGGC
GCGGCGCGGCATCGACCTGTTCGAGAACCTCGACCTGAAAGAACTCGGCG
AGCGCGGGCCCGGTGAGTTCCTGTTCAGCTGGGCACCGTTGAAACTCGTC
GGCGCAACCGGCTCGCCGGGCAATCCGATCGCCGTGTGGTAA
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