mRNA_M-pyrifera_M_contig121556.4430.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121556.4430.1
Unique NamemRNA_M-pyrifera_M_contig121556.4430.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121556.4430.1 vs. uniprot
Match: A0A517YE53_9BACT (Putative oxidoreductase CzcO n=1 Tax=Anatilimnocola aggregata TaxID=2528021 RepID=A0A517YE53_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 2.130e-6
Identity = 29/86 (33.72%), Postives = 45/86 (52.33%), Query Frame = 1 
Query:    1 VRYEGGKEEEVDAILCATGFKNRYALVQEHLDMTGDGSPKGLICGALSVKHKNLFLIGTHRVPGGEGPVWSAVAALISSVILWQRD 258
            VR+  G+EE++D ILCATG+K  +  +   L M  DGSP+ L   A   +H  LF+ G  +  G   P+    + L++  +  Q  
Sbjct:  297 VRFVDGREEDIDVILCATGYKTTFPFLDPSLLMADDGSPR-LFLNAFHPQHDRLFVAGLIQPNGSIWPLVDWQSRLMAKFVRAQES 381
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BLAST of mRNA_M-pyrifera_M_contig121556.4430.1 vs. uniprot
Match: A0A836Q1H7_9BACT (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Candidatus Melainabacteria bacterium TaxID=2052166 RepID=A0A836Q1H7_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 1.860e-5
Identity = 33/104 (31.73%), Postives = 53/104 (50.96%), Query Frame = 1 
Query:    1 VRYEGGKEEEVDAILCATGFKNRYALVQEHLDMTGDGSPKGLICGALSVKHKNLFLIGTHRVPGGEGPVWSAVAALISSVILWQRDMKGSSAAV-ALQRSPLPK 309
            V +  GK EE+D I+C TGF      ++  + +  DGS      G ++  H+ L++ G  +   G GP+ +  + LI+ +IL QR +      V A  + PLPK
Sbjct:  289 VEFADGKREEIDLIVCGTGFNVSIPFLEPGV-VDIDGSIVKTQWGVVAPHHRQLYIYGWAQARYGFGPLLTPASDLIADLILLQRKLVHPIGEVLARMKQPLPK 391
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BLAST of mRNA_M-pyrifera_M_contig121556.4430.1 vs. uniprot
Match: A0A165VAJ7_9HYPH (Putative oxidoreductase CzcO n=18 Tax=Pseudovibrio TaxID=258255 RepID=A0A165VAJ7_9HYPH)

HSP 1 Score: 50.8 bits (120), Expect = 8.850e-5
Identity = 36/105 (34.29%), Postives = 52/105 (49.52%), Query Frame = 1 
Query:    1 VRYEGGKEEEVDAILCATGFKNRYALVQEHLDMTGDGSPKGLICGALSVKHKNLFLIGTHRVPGGEGPVWSAVAALISSVILWQRDMKGSSAAV-ALQRSPLPKL 312
            V ++ G  EE+D ILCATGF        E+    G G PK  I  A S +HKNLF I       G    +  +A L+++ +  Q+D    ++ + A+ RS  P L
Sbjct:  296 VVFKDGSREEIDLILCATGFNQHLDFAGEYFSYEG-GRPKMFIQAA-SREHKNLFGISYIETNSGAYKRFDYMAGLVANYLKDQQDNPSRASQMHAIIRSETPDL 398
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121556.4430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A517YE53_9BACT2.130e-633.72Putative oxidoreductase CzcO n=1 Tax=Anatilimnocol... [more]
A0A836Q1H7_9BACT1.860e-531.73NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Candid... [more]
A0A165VAJ7_9HYPH8.850e-534.29Putative oxidoreductase CzcO n=18 Tax=Pseudovibrio... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121556contigM-pyrifera_M_contig121556:37..417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815734.338933-CDS-M-pyrifera_M_contig121556:36..4171622815734.338933-CDS-M-pyrifera_M_contig121556:36..417Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121556 37..417 -
1692277544.2817702-CDS-M-pyrifera_M_contig121556:36..4171692277544.2817702-CDS-M-pyrifera_M_contig121556:36..417Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121556 37..417 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121556.4430.1prot_M-pyrifera_M_contig121556.4430.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121556 37..417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121556.4430.1

>prot_M-pyrifera_M_contig121556.4430.1 ID=prot_M-pyrifera_M_contig121556.4430.1|Name=mRNA_M-pyrifera_M_contig121556.4430.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
VRYEGGKEEEVDAILCATGFKNRYALVQEHLDMTGDGSPKGLICGALSVK
HKNLFLIGTHRVPGGEGPVWSAVAALISSVILWQRDMKGSSAAVALQRSP
LPKLFHRPLPAYDSAVDPHSYFAELRM
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mRNA from alignment at M-pyrifera_M_contig121556:37..417-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121556.4430.1 ID=mRNA_M-pyrifera_M_contig121556.4430.1|Name=mRNA_M-pyrifera_M_contig121556.4430.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=381bp|location=Sequence derived from alignment at M-pyrifera_M_contig121556:37..417- (Macrocystis pyrifera P11B4 male)
GTGCGATATGAGGGCGGCAAAGAGGAGGAGGTGGACGCGATCCTCTGTGC
GACAGGATTCAAGAACAGATACGCCCTCGTCCAAGAGCACTTGGACATGA
CAGGCGACGGCTCTCCCAAGGGCCTCATCTGCGGCGCTCTCTCAGTGAAG
CACAAGAATCTCTTCCTTATTGGCACACATAGAGTGCCAGGTGGCGAAGG
GCCCGTGTGGAGCGCTGTCGCCGCTCTCATTTCCTCCGTTATTCTTTGGC
AGAGAGATATGAAGGGCTCCTCCGCTGCTGTGGCTCTCCAGAGGTCGCCC
CTCCCGAAGCTCTTCCACAGGCCACTCCCTGCATACGACAGTGCAGTGGA
CCCTCACTCTTACTTTGCAGAGCTGCGCATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121556:37..417-

>mRNA_M-pyrifera_M_contig121556.4430.1 ID=mRNA_M-pyrifera_M_contig121556.4430.1|Name=mRNA_M-pyrifera_M_contig121556.4430.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig121556:37..417- (Macrocystis pyrifera P11B4 male)
GTGCGATATGAGGGCGGCAAAGAGGAGGAGGTGGACGCGATCCTCTGTGC
GACAGGATTCAAGAACAGATACGCCCTCGTCCAAGAGCACTTGGACATGA
CAGGCGACGGCTCTCCCAAGGGCCTCATCTGCGGCGCTCTCTCAGTGAAG
CACAAGAATCTCTTCCTTATTGGCACACATAGAGTGCCAGGTGGCGAAGG
GCCCGTGTGGAGCGCTGTCGCCGCTCTCATTTCCTCCGTTATTCTTTGGC
AGAGAGATATGAAGGGCTCCTCCGCTGCTGTGGCTCTCCAGAGGTCGCCC
CTCCCGAAGCTCTTCCACAGGCCACTCCCTGCATACGACAGTGCAGTGGA
CCCTCACTCTTACTTTGCAGAGCTGCGCATGGTGCGATATGAGGGCGGCA
AAGAGGAGGAGGTGGACGCGATCCTCTGTGCGACAGGATTCAAGAACAGA
TACGCCCTCGTCCAAGAGCACTTGGACATGACAGGCGACGGCTCTCCCAA
GGGCCTCATCTGCGGCGCTCTCTCAGTGAAGCACAAGAATCTCTTCCTTA
TTGGCACACATAGAGTGCCAGGTGGCGAAGGGCCCGTGTGGAGCGCTGTC
GCCGCTCTCATTTCCTCCGTTATTCTTTGGCAGAGAGATATGAAGGGCTC
CTCCGCTGCTGTGGCTCTCCAGAGGTCGCCCCTCCCGAAGCTCTTCCACA
GGCCACTCCCTGCATACGACAGTGCAGTGGACCCTCACTCTTACTTTGCA
GAGCTGCGCATG
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