mRNA_M-pyrifera_M_contig121544.4428.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig121544.4428.1 vs. uniprot
Match: UPI001BAE0584 (autotransporter domain-containing protein n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=UPI001BAE0584) HSP 1 Score: 64.7 bits (156), Expect = 9.480e-10 Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 1
Query: 4 SLFENKGVWNAFGGTSSFGGAFTNSGILNLQNGVANDVV-MTGDLALTGSSVVKIDVDNANRSDRLTVEGSVSLAG 228
S F N G WNA +S+F G +N+G +N+QNGVA V+ + G+ A G+ V ++DVD A +DR+ V G+ +L G
Sbjct: 1158 STFANSGTWNAGTASSAFSGNLSNTGTVNIQNGVAGQVITLAGNYA--GNGVYRVDVDAAGNADRINVSGTANLTG 1231
BLAST of mRNA_M-pyrifera_M_contig121544.4428.1 vs. uniprot
Match: A0A0A8K3M0_9HYPH (Autotransporter domain-containing protein n=2 Tax=Methyloceanibacter caenitepidi TaxID=1384459 RepID=A0A0A8K3M0_9HYPH) HSP 1 Score: 60.5 bits (145), Expect = 2.860e-8 Identity = 40/105 (38.10%), Postives = 60/105 (57.14%), Query Frame = 1
Query: 43 GTSSFGGAFTNSGILNLQNGVANDVVMTGDLALTGSSVVKIDVDNANRSDRLTVEGSVSLAGEIEVNANGLDTDYSRGSDYR----YTLIDNDGTDAVTGSFSKV 345
GT +FG +N G ++L N + + + + GDL L+ SV +++VD R+D V G+V+L G L +GS YR YT+I NDG+DAV G F+K+
Sbjct: 718 GTGTFGELISNGGTISLGNSIGS-MTINGDLTLSRGSVFEVEVDANGRNDTAIVNGAVNLTGAT------LRVLAKKGS-YRTRTNYTIIQNDGSDAVNGKFAKL 814
BLAST of mRNA_M-pyrifera_M_contig121544.4428.1 vs. uniprot
Match: Q2N5D9_ERYLH (Autotransporter n=2 Tax=Erythrobacter litoralis TaxID=39960 RepID=Q2N5D9_ERYLH) HSP 1 Score: 59.7 bits (143), Expect = 5.400e-8 Identity = 43/108 (39.81%), Postives = 63/108 (58.33%), Query Frame = 1
Query: 61 GAFTNSGILNLQN--------GVANDVVMTGDLALTGSSVVKIDVDNANRSDRLTVEGSVSLAGE----IEVNANGLDTDYSRGSD-YRYTLIDNDGTDAVTGSFSKV 345
G+ SGIL+ N G+A + TG+L L S ++I+VD+A RSD + V GSV+L G +E+ +G GSD +RY +I+NDGTDA++GSF +
Sbjct: 415 GSVDASGILSPGNSFPAGSGFGIAR--LTTGNLILRAGSTLEIEVDDAGRSDVIVVNGSVTLEGGTLAVVELTRDGF-----LGSDPFRYIIIENDGTDAISGSFGTI 515
BLAST of mRNA_M-pyrifera_M_contig121544.4428.1 vs. uniprot
Match: A0A1E3VX90_9HYPH (Autotransporter domain-containing protein n=1 Tax=Methyloceanibacter methanicus TaxID=1774968 RepID=A0A1E3VX90_9HYPH) HSP 1 Score: 58.9 bits (141), Expect = 9.710e-8 Identity = 38/103 (36.89%), Postives = 61/103 (59.22%), Query Frame = 1
Query: 43 GTSSFGGAFTNSGILNLQNGVANDVVMTGDLALTGSSVVKIDVDNANRSDRLTVE--GSVSLAGEIEVNANGLDTDYSRGSDYRYTLIDNDGTDAVTGSFSKV 345
GT +FGG +G L N + + + G+ L S+ +++V+ A +SD++ V GSV+L G + + + +Y+ +DY T+IDNDG DAVTG+FS V
Sbjct: 330 GTGTFGGLTVTNGTLAPGNSIGT-MTVNGNFTLGSGSIFEVEVNAAGQSDKVLVRSGGSVNLTGSV-LRVMAQNGNYNPTTDY--TIIDNDGADAVTGTFSSV 428
BLAST of mRNA_M-pyrifera_M_contig121544.4428.1 vs. uniprot
Match: UPI000D3E7A73 (autotransporter domain-containing protein n=1 Tax=Methyloceanibacter sp. wino2 TaxID=2170729 RepID=UPI000D3E7A73) HSP 1 Score: 57.4 bits (137), Expect = 3.400e-7 Identity = 42/124 (33.87%), Postives = 62/124 (50.00%), Query Frame = 1
Query: 19 KGVWNAFGGTSS----FGGAFTNSGILNLQNGVA---------NDVVMTGDLALTGSSVVKIDVDNANRSDRLTVEGSVSLAGEI--EVNANGLDTDYSRGSDYRYTLIDNDGTDAVTGSFSKV 345
G W GGTS GG +G + + + + + G L L+G +V +++VD A +D++ V+G+V L G + ANG DY + +DY T+IDNDG DAV G F V
Sbjct: 516 SGNWTFTGGTSMPLTVMGGVVKGTGTFGMLDIIGATLAPGNSIGTIRVNGGLTLSGGAVYEVEVDAAGNADKVVVKGTVDLTGSALRVLAANG---DYKQSTDY--TIIDNDGGDAVKGRFGSV 634
BLAST of mRNA_M-pyrifera_M_contig121544.4428.1 vs. uniprot
Match: UPI001FCB4A19 (autotransporter domain-containing protein n=1 Tax=Thalassospira sp. GB04J01 TaxID=1485225 RepID=UPI001FCB4A19) HSP 1 Score: 55.8 bits (133), Expect = 1.160e-6 Identity = 31/103 (30.10%), Postives = 55/103 (53.40%), Query Frame = 1
Query: 40 GGTSSFGGAFTNSGILNLQNGVANDVVMTGDLALTGSSVVKIDVDNANRSDRLTVEGSVSLAGEIEVNANGLD-TDYSRGSDYRYTLIDNDGTDAVTGSFSKV 345
GGT + SG ++ + G+ L +++ I+VD+A +D++ V G+V + G + G+ ++S S Y YT+I+NDG DA+TG F+ +
Sbjct: 320 GGTGTTNDVTVQSGGIHAPGNSIGTQTVNGNYVLGNGAILAIEVDDAGNADKVIVNGTVDITGAT-LRITGISGNNFSGQSTYNYTIIENDGVDAITGDFATI 421
BLAST of mRNA_M-pyrifera_M_contig121544.4428.1 vs. uniprot
Match: A0A0A8K2J6_9HYPH (Autotransporter domain-containing protein n=2 Tax=Methyloceanibacter caenitepidi TaxID=1384459 RepID=A0A0A8K2J6_9HYPH) HSP 1 Score: 55.1 bits (131), Expect = 2.210e-6 Identity = 40/116 (34.48%), Postives = 62/116 (53.45%), Query Frame = 1
Query: 1 TSLFENKGVWNAFGGTSSFGGAFTNSGILNLQNGVANDVVMTGDLALTGSSVVKIDVDNANRSDRLTVEGSVSLAGE-IEVNANGLDTDYSRGSDYRYTLIDNDGTDAVTGSFSKV 345
T+ F G GG +FGG G L N + V + G ++ +S +++VD A +D++ V G+V+L G ++V A G +Y +DY T+I NDGTD+V G+F V
Sbjct: 663 TAAFTQTG--GTLGGNPTFGGLNVLGGTLAPGNSIGT-VTVNGAFSMAAASTFEVEVDAAGNNDKVVVHGTVNLTGATLKVLAAG--GNYKDSTDY--TIIANDGTDSVKGTFGSV 771
BLAST of mRNA_M-pyrifera_M_contig121544.4428.1 vs. uniprot
Match: A0A0A8K1T7_9HYPH (Autotransporter domain-containing protein n=1 Tax=Methyloceanibacter caenitepidi TaxID=1384459 RepID=A0A0A8K1T7_9HYPH) HSP 1 Score: 55.1 bits (131), Expect = 2.220e-6 Identity = 40/116 (34.48%), Postives = 62/116 (53.45%), Query Frame = 1
Query: 1 TSLFENKGVWNAFGGTSSFGGAFTNSGILNLQNGVANDVVMTGDLALTGSSVVKIDVDNANRSDRLTVEGSVSLAGE-IEVNANGLDTDYSRGSDYRYTLIDNDGTDAVTGSFSKV 345
T+ F G GG +FGG G L N + V + G ++ +S +++VD A +D++ V G+V+L G ++V A G +Y +DY T+I NDGTD+V G+F V
Sbjct: 770 TAAFTQTG--GTLGGNPTFGGLNVLGGTLAPGNSIGT-VTVNGAFSMAAASTFEVEVDAAGNNDKVVVHGTVNLTGATLKVLAAG--GNYKDSTDY--TIIANDGTDSVKGTFGSV 878
BLAST of mRNA_M-pyrifera_M_contig121544.4428.1 vs. uniprot
Match: A0A6I4TYR9_9SPHN (Autotransporter domain-containing protein n=1 Tax=Croceibacterium xixiisoli TaxID=1476466 RepID=A0A6I4TYR9_9SPHN) HSP 1 Score: 53.5 bits (127), Expect = 7.580e-6 Identity = 34/104 (32.69%), Postives = 50/104 (48.08%), Query Frame = 1
Query: 40 GGTSSFGGAFTNSGIL--NLQNGVANDVVMTGDLALTGSSVVKIDVDNANRSDRLTVEGSVSLAGEIEVNANGLDTDYSRGSDYRYTLIDNDGTDAVTGSFSKV 345
GG+ G G L +G + TG+L L +S + I V++ SDRL V G+V+L G + + + YT++DNDG DA+TG F V
Sbjct: 505 GGSGRLGAVTMQGGTLAPGSSSGAGIATLTTGNLTLDAASTLAIKVNDQGGSDRLVVNGTVALGGATLAVQEIAGNSFGGINPFVYTILDNDGADAITGQFGTV 608
BLAST of mRNA_M-pyrifera_M_contig121544.4428.1 vs. uniprot
Match: UPI00064578AC (Ig-like domain-containing protein n=1 Tax=Pseudomonas mendocina TaxID=300 RepID=UPI00064578AC) HSP 1 Score: 52.4 bits (124), Expect = 1.950e-5 Identity = 32/90 (35.56%), Postives = 51/90 (56.67%), Query Frame = 1
Query: 85 LNLQNGVANDVVMTGDLALTGSSVVKIDVDNANRS---DRLTVEGSVSLAGEIEVNANGLDTDYSRGSDYRYTLIDNDGTDAVTGSFSKV 345
L+ NG A + + G+L+L S + +D++ DR+ V GS +L+G +G Y+ GS RYT+I NDG DA+TG+F+ +
Sbjct: 2 LSPGNGGAGSLNVNGNLSLAAGSTLALDINGTTAGSGYDRVLVNGSANLSGATLAVTHG----YTAGSGDRYTVIVNDGGDAITGTFTGI 87 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121544.4428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig121544.4428.1 >prot_M-pyrifera_M_contig121544.4428.1 ID=prot_M-pyrifera_M_contig121544.4428.1|Name=mRNA_M-pyrifera_M_contig121544.4428.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp TSLFENKGVWNAFGGTSSFGGAFTNSGILNLQNGVANDVVMTGDLALTGSback to top mRNA from alignment at M-pyrifera_M_contig121544:185..529+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig121544.4428.1 ID=mRNA_M-pyrifera_M_contig121544.4428.1|Name=mRNA_M-pyrifera_M_contig121544.4428.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig121544:185..529+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig121544:185..529+ >mRNA_M-pyrifera_M_contig121544.4428.1 ID=mRNA_M-pyrifera_M_contig121544.4428.1|Name=mRNA_M-pyrifera_M_contig121544.4428.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig121544:185..529+ (Macrocystis pyrifera P11B4 male)back to top |