mRNA_M-pyrifera_M_contig121471.4421.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121471.4421.1
Unique NamemRNA_M-pyrifera_M_contig121471.4421.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121471.4421.1 vs. uniprot
Match: A0A2E7KA43_9PLAN (GP-PDE domain-containing protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KA43_9PLAN)

HSP 1 Score: 304 bits (778), Expect = 4.060e-98
Identity = 156/161 (96.89%), Postives = 159/161 (98.76%), Query Frame = 1
Query:    1 DRVGVIIELKYYGHDEQLEQRVVDIVEAAGMAKQVMIMSLKPKRVAKTKALRPDWKCGVLLSVYAGNLKEIKADFLAVNANFASRNFVKRAHKAGKEVFVWTVDDPAMMSQMMNRGVDGLLTNVPAVAKQVIQERESLTPAERLLVEVALLFQEPQAELEQ 483
            DRVGVIIELKYYGHDEQLEQRVVDIVEAAGMAKQVMIMSLKPKRVAKTKALRPDWKCGVLLSVYAGNLKEIKADFLAVNANFASRNFVKRAHKAGKEVFVWTVDDPAMMSQMMNRGVDGLLTNVPAVAKQVIQERESL PAERLLVE+ALLF++PQAEL Q
Sbjct:  457 DRVGVIIELKYYGHDEQLEQRVVDIVEAAGMAKQVMIMSLKPKRVAKTKALRPDWKCGVLLSVYAGNLKEIKADFLAVNANFASRNFVKRAHKAGKEVFVWTVDDPAMMSQMMNRGVDGLLTNVPAVAKQVIQERESLNPAERLLVEIALLFKQPQAELVQ 617          
BLAST of mRNA_M-pyrifera_M_contig121471.4421.1 vs. uniprot
Match: A0A518A922_9PLAN (Glycerophosphoryl diester phosphodiesterase n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A922_9PLAN)

HSP 1 Score: 239 bits (610), Expect = 4.290e-73
Identity = 114/161 (70.81%), Postives = 140/161 (86.96%), Query Frame = 1
Query:    1 DRVGVIIELKYYGHDEQLEQRVVDIVEAAGMAKQVMIMSLKPKRVAKTKALRPDWKCGVLLSVYAGNLKEIKADFLAVNANFASRNFVKRAHKAGKEVFVWTVDDPAMMSQMMNRGVDGLLTNVPAVAKQVIQERESLTPAERLLVEVALLFQEPQAELEQ 483
            D++GVIIELKYYGHD+QLEQRV DIVE+ GMA Q+M+MSLKP+ +AK KALRPDWKCG+LLSV+AG+L+ IKADFLAVNA FA+R+FV RAH A K+V+VWTVDDP  M Q+MNRGVDG+LTN PA+A++VI ERE + PAERLL E++LLF +P  +LEQ
Sbjct:  457 DKIGVIIELKYYGHDQQLEQRVADIVESEGMADQIMVMSLKPEGIAKMKALRPDWKCGLLLSVHAGDLENIKADFLAVNAKFATRSFVNRAHNAEKDVYVWTVDDPTQMLQLMNRGVDGILTNRPALARKVIHEREEMKPAERLLAEISLLFNQPPTDLEQ 617          
BLAST of mRNA_M-pyrifera_M_contig121471.4421.1 vs. uniprot
Match: A0A255R8D9_9BACT (GP-PDE domain-containing protein n=1 Tax=Rhodopirellula sp. MGV TaxID=2023130 RepID=A0A255R8D9_9BACT)

HSP 1 Score: 216 bits (550), Expect = 2.940e-64
Identity = 105/150 (70.00%), Postives = 129/150 (86.00%), Query Frame = 1
Query:    1 DRVGVIIELKYYGHDEQLEQRVVDIVEAAGMAKQVMIMSLKPKRVAKTKALRPDWKCGVLLSVYAGNLKEIKADFLAVNANFASRNFVKRAHKAGKEVFVWTVDDPAMMSQMMNRGVDGLLTNVPAVAKQVIQERESLTPAERLLVEVAL 450
            DRVGVIIELKYYGHD+QLE+RVV IVE+ GMA QVM+MSL P+ VAKTK LRPDWK G L+SVY GNL+ I ADFLAVNA+FA+R+F++RAH+AGKEVFVWTVDDPA MS +MNR VDG+LTN P +A+ VI++R +L  +ERLL E+++
Sbjct:  463 DRVGVIIELKYYGHDQQLEERVVQIVESEGMADQVMVMSLDPRGVAKTKTLRPDWKYGRLMSVYVGNLRNIDADFLAVNADFANRDFIRRAHQAGKEVFVWTVDDPAKMSMLMNRKVDGILTNRPDIARDVIRQRAALGSSERLLAEISV 612          
BLAST of mRNA_M-pyrifera_M_contig121471.4421.1 vs. uniprot
Match: UPI00135BAFEB (glycerophosphoryl diester phosphodiesterase membrane domain-containing protein n=2 Tax=Roseiconus lacunae TaxID=2605694 RepID=UPI00135BAFEB)

HSP 1 Score: 214 bits (544), Expect = 2.240e-63
Identity = 104/150 (69.33%), Postives = 126/150 (84.00%), Query Frame = 1
Query:    1 DRVGVIIELKYYGHDEQLEQRVVDIVEAAGMAKQVMIMSLKPKRVAKTKALRPDWKCGVLLSVYAGNLKEIKADFLAVNANFASRNFVKRAHKAGKEVFVWTVDDPAMMSQMMNRGVDGLLTNVPAVAKQVIQERESLTPAERLLVEVAL 450
            D++GV IELKYYGHD+ LE+RVV IVEA GM  QVM+MSLKP+ VAKTKALRPDWK G+LLSVY GNL +I  DFLAVNA FASR FVKRAH+AGKEV+VWTVDDPA MS +MNR +DG+LTN P +A+ VI++R  L+ +ERLL E+++
Sbjct:  463 DQIGVNIELKYYGHDQHLEERVVSIVEAEGMDDQVMVMSLKPQGVAKTKALRPDWKYGLLLSVYVGNLNKIDTDFLAVNAEFASRAFVKRAHRAGKEVYVWTVDDPAKMSMLMNRNIDGILTNRPDIARDVIRQRAELSSSERLLAEISV 612          
BLAST of mRNA_M-pyrifera_M_contig121471.4421.1 vs. uniprot
Match: A0A3L7VD19_9BACT (GP-PDE domain-containing protein n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7VD19_9BACT)

HSP 1 Score: 202 bits (513), Expect = 8.270e-59
Identity = 95/152 (62.50%), Postives = 123/152 (80.92%), Query Frame = 1
Query:    1 DRVGVIIELKYYGHDEQLEQRVVDIVEAAGMAKQVMIMSLKPKRVAKTKALRPDWKCGVLLSVYAGNLKEIKADFLAVNANFASRNFVKRAHKAGKEVFVWTVDDPAMMSQMMNRGVDGLLTNVPAVAKQVIQERESLTPAERLLVEVALLF 456
            DR+GVIIELKYYGHD++LEQRVV++VE  GM +Q+MIMSLKP+ + K +ALRP WKCG+LLSV  G+LK ++ADFLAVNA  ASR  V++ H AGK++FVWTVD+PA MS +MNRGVDG+LTN P +A+ VI+ R  ++  ERLL E+A + 
Sbjct:  458 DRIGVIIELKYYGHDQRLEQRVVELVERTGMTRQIMIMSLKPEGIRKLRALRPTWKCGLLLSVAVGDLKTVEADFLAVNAKIASRALVQQIHSAGKQIFVWTVDEPATMSSLMNRGVDGILTNRPEIARGVIESRAQMSLTERLLTELAAML 609          
BLAST of mRNA_M-pyrifera_M_contig121471.4421.1 vs. uniprot
Match: A0A518DS76_9BACT (Putative glycerophosphoryl diester phosphodiesterase 1 n=1 Tax=Lignipirellula cremea TaxID=2528010 RepID=A0A518DS76_9BACT)

HSP 1 Score: 189 bits (481), Expect = 4.040e-54
Identity = 93/151 (61.59%), Postives = 121/151 (80.13%), Query Frame = 1
Query:    4 RVGVIIELKYYGHDEQLEQRVVDIVEAAGMAKQVMIMSLKPKRVAKTKALRPDWKCGVLLSVYAGNLKEIKADFLAVNANFASRNFVKRAHKAGKEVFVWTVDDPAMMSQMMNRGVDGLLTNVPAVAKQVIQERESLTPAERLLVEVALLF 456
            +VGV+IELKYYGHDEQLEQRV+D+VEA GM K+V IMSLK   V K K LRP W  G+LLSV AG+L++I  DFLAVNA FA+R F++ AH+  ++V+VWTVDD A MS ++ RGVDG++TN PA A++V+Q+R+ L+P ERLL+E+A  F
Sbjct:  466 KVGVVIELKYYGHDEQLEQRVIDLVEARGMGKEVKIMSLKLAAVQKMKQLRPAWDTGLLLSVAAGDLQKIDVDFLAVNARFANRRFIQSAHRHDRKVYVWTVDDCAAMSTLIGRGVDGVITNRPATAQEVLQQRQQLSPPERLLLELAEAF 616          
BLAST of mRNA_M-pyrifera_M_contig121471.4421.1 vs. uniprot
Match: A0A7W5H8V2_9BACT (Glycerophosphoryl diester phosphodiesterase n=2 Tax=Rhodopirellula TaxID=265488 RepID=A0A7W5H8V2_9BACT)

HSP 1 Score: 185 bits (469), Expect = 2.150e-52
Identity = 90/151 (59.60%), Postives = 120/151 (79.47%), Query Frame = 1
Query:    4 RVGVIIELKYYGHDEQLEQRVVDIVEAAGMAKQVMIMSLKPKRVAKTKALRPDWKCGVLLSVYAGNLKEIKADFLAVNANFASRNFVKRAHKAGKEVFVWTVDDPAMMSQMMNRGVDGLLTNVPAVAKQVIQERESLTPAERLLVEVALLF 456
            R+GV IELKYYGHD+ LEQRVVD+VEA GM   V+ MSLK   V K K+LRPDWK G+L+SV AG+L++I  DFLAVNA FASR+F+  AH +G +V+VWTV+DP  MS M+ RGVDGLLT+ PA+A++V+++R +++  ERL++E+A L 
Sbjct:  464 RIGVNIELKYYGHDQDLEQRVVDVVEAEGMVSDVLAMSLKRDGVRKLKSLRPDWKVGLLMSVSAGDLRKIDVDFLAVNAGFASRSFIASAHASGMDVYVWTVNDPVTMSTMIGRGVDGLLTDRPALARKVLKQRAAMSAPERLMLELAGLL 614          
BLAST of mRNA_M-pyrifera_M_contig121471.4421.1 vs. uniprot
Match: A0A368KMK3_9BACT (GP-PDE domain-containing protein n=2 Tax=Blastopirellula cremea TaxID=1031537 RepID=A0A368KMK3_9BACT)

HSP 1 Score: 181 bits (460), Expect = 4.290e-51
Identity = 88/151 (58.28%), Postives = 118/151 (78.15%), Query Frame = 1
Query:    4 RVGVIIELKYYGHDEQLEQRVVDIVEAAGMAKQVMIMSLKPKRVAKTKALRPDWKCGVLLSVYAGNLKEIKADFLAVNANFASRNFVKRAHKAGKEVFVWTVDDPAMMSQMMNRGVDGLLTNVPAVAKQVIQERESLTPAERLLVEVALLF 456
            ++ V IELKYYGHD+QLEQRV DIV+  GMA Q+MIMSLK K VAK KALRP+WK G+LLSV  GNLK++ ADFLA+NA FA+  F++ AH   K+++VWTV+D   MS M++RGVDG+LT+ PA+A+ V+++R  ++  ERLL+E + L 
Sbjct:  464 KIKVNIELKYYGHDQQLEQRVADIVDQQGMASQIMIMSLKRKAVAKMKALRPNWKVGLLLSVATGNLKKLDADFLAINARFATPMFIQNAHDNHKDIYVWTVNDATTMSTMISRGVDGILTDKPALARSVLRQRNEMSTPERLLLEFSTLL 614          
BLAST of mRNA_M-pyrifera_M_contig121471.4421.1 vs. uniprot
Match: A0A518KBZ8_9BACT (Glycerophosphoryl diester phosphodiesterase n=1 Tax=Botrimarina mediterranea TaxID=2528022 RepID=A0A518KBZ8_9BACT)

HSP 1 Score: 181 bits (458), Expect = 7.800e-51
Identity = 86/154 (55.84%), Postives = 118/154 (76.62%), Query Frame = 1
Query:    4 RVGVIIELKYYGHDEQLEQRVVDIVEAAGMAKQVMIMSLKPKRVAKTKALRPDWKCGVLLSVYAGNLKEIKADFLAVNANFASRNFVKRAHKAGKEVFVWTVDDPAMMSQMMNRGVDGLLTNVPAVAKQVIQERESLTPAERLLVEVALLFQEP 465
            + GV++ELKY+GHD +LE+RVV+IVEAAGM  Q   MSL    VAK KALRP+W+ G LLSV AG+ + ++ DFLAVNA+FA+R  +++ H  G+E++VWTVDDP  MS +++RGVDGL+TNVPA A+ V+ ER+ + P  RLLV++A  F+ P
Sbjct:  453 KAGVLVELKYFGHDVRLEERVVEIVEAAGMVDQTKFMSLHRNGVAKLKALRPEWRVGQLLSVTAGSSRRLEGDFLAVNASFATRELIRKTHHGGRELYVWTVDDPMTMSALISRGVDGLITNVPAKARSVLAERDDMPPVSRLLVDLADRFRIP 606          
BLAST of mRNA_M-pyrifera_M_contig121471.4421.1 vs. uniprot
Match: A0A6B3L2L7_9BACT (Glycerophosphoryl diester phosphodiesterase membrane domain-containing protein n=1 Tax=Sulfuriroseicoccus oceanibius TaxID=2707525 RepID=A0A6B3L2L7_9BACT)

HSP 1 Score: 180 bits (457), Expect = 1.060e-50
Identity = 88/161 (54.66%), Postives = 119/161 (73.91%), Query Frame = 1
Query:    1 DRVGVIIELKYYGHDEQLEQRVVDIVEAAGMAKQVMIMSLKPKRVAKTKALRPDWKCGVLLSVYAGNLKEIKADFLAVNANFASRNFVKRAHKAGKEVFVWTVDDPAMMSQMMNRGVDGLLTNVPAVAKQVIQERESLTPAERLLVEVALLFQEPQAELEQ 483
            +R GV+IELKYYGHDE LEQRV++IVE   M  QVMIMSL+   + K + LRPDWK G+L SV  G+L  +  DFL +NA  A++  ++RAH+AG +VFVWTV+DP  MS + +RG DGL+T+ PA+A+ V+Q+R+ L P ERLL+E+A +F  P  +LEQ
Sbjct:  456 NRAGVLIELKYYGHDEMLEQRVINIVEDLQMVDQVMIMSLQRPGIEKVRQLRPDWKIGLLSSVAVGDLTRLDVDFLGLNARAATKPLIERAHRAGIDVFVWTVNDPISMSSLTSRGADGLITDKPALARDVLQQRKDLNPGERLLLELAHIFGSPSRQLEQ 616          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121471.4421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7KA43_9PLAN4.060e-9896.89GP-PDE domain-containing protein n=6 Tax=Gimesia T... [more]
A0A518A922_9PLAN4.290e-7370.81Glycerophosphoryl diester phosphodiesterase n=2 Ta... [more]
A0A255R8D9_9BACT2.940e-6470.00GP-PDE domain-containing protein n=1 Tax=Rhodopire... [more]
UPI00135BAFEB2.240e-6369.33glycerophosphoryl diester phosphodiesterase membra... [more]
A0A3L7VD19_9BACT8.270e-5962.50GP-PDE domain-containing protein n=2 Tax=Planctomy... [more]
A0A518DS76_9BACT4.040e-5461.59Putative glycerophosphoryl diester phosphodiestera... [more]
A0A7W5H8V2_9BACT2.150e-5259.60Glycerophosphoryl diester phosphodiesterase n=2 Ta... [more]
A0A368KMK3_9BACT4.290e-5158.28GP-PDE domain-containing protein n=2 Tax=Blastopir... [more]
A0A518KBZ8_9BACT7.800e-5155.84Glycerophosphoryl diester phosphodiesterase n=1 Ta... [more]
A0A6B3L2L7_9BACT1.060e-5054.66Glycerophosphoryl diester phosphodiesterase membra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121471contigM-pyrifera_M_contig121471:2..487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score185.7
Seed ortholog evalue1.8e-44
Seed eggNOG ortholog595460.RRSWK_05276
Preferred nameglpQ
KEGG rclassRC00017,RC00425
KEGG koko:K01126
KEGG ReactionR01030,R01470
KEGG Pathwayko00564,map00564
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glycerophosphoryl diester phosphodiesterase family
EggNOG OGs2J0S0@203682,COG0584@1,COG0584@2
EC3.1.4.46
COG Functional cat.C
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size486
Cds size486
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815733.9602168-CDS-M-pyrifera_M_contig121471:1..4871622815733.9602168-CDS-M-pyrifera_M_contig121471:1..487Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121471 2..487 +
1692277544.106556-CDS-M-pyrifera_M_contig121471:1..4871692277544.106556-CDS-M-pyrifera_M_contig121471:1..487Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121471 2..487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121471.4421.1prot_M-pyrifera_M_contig121471.4421.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121471 2..487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121471.4421.1

>prot_M-pyrifera_M_contig121471.4421.1 ID=prot_M-pyrifera_M_contig121471.4421.1|Name=mRNA_M-pyrifera_M_contig121471.4421.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=162bp
DRVGVIIELKYYGHDEQLEQRVVDIVEAAGMAKQVMIMSLKPKRVAKTKA
LRPDWKCGVLLSVYAGNLKEIKADFLAVNANFASRNFVKRAHKAGKEVFV
WTVDDPAMMSQMMNRGVDGLLTNVPAVAKQVIQERESLTPAERLLVEVAL
LFQEPQAELEQ*
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mRNA from alignment at M-pyrifera_M_contig121471:2..487+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121471.4421.1 ID=mRNA_M-pyrifera_M_contig121471.4421.1|Name=mRNA_M-pyrifera_M_contig121471.4421.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig121471:2..487+ (Macrocystis pyrifera P11B4 male)
GACAGGGTGGGCGTGATTATTGAGCTGAAATACTACGGCCACGATGAGCA GTTGGAGCAGCGGGTGGTGGACATTGTCGAAGCAGCGGGTATGGCCAAGC AGGTGATGATCATGTCACTCAAACCCAAGCGGGTGGCGAAGACCAAAGCC TTGCGACCAGACTGGAAATGTGGCGTCTTACTCTCTGTCTATGCAGGCAA CCTGAAAGAGATTAAAGCAGACTTTCTGGCCGTGAACGCGAACTTCGCCT CGCGAAATTTTGTGAAGCGGGCTCATAAAGCGGGGAAAGAGGTCTTTGTG TGGACGGTCGATGACCCGGCCATGATGTCTCAAATGATGAACCGGGGCGT GGATGGATTGCTGACGAATGTCCCCGCGGTGGCGAAGCAGGTGATCCAGG AACGCGAGTCGCTCACCCCTGCAGAACGGCTGCTGGTGGAGGTGGCGCTA CTGTTTCAAGAACCGCAGGCAGAGCTGGAGCAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121471:2..487+

>mRNA_M-pyrifera_M_contig121471.4421.1 ID=mRNA_M-pyrifera_M_contig121471.4421.1|Name=mRNA_M-pyrifera_M_contig121471.4421.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=972bp|location=Sequence derived from alignment at M-pyrifera_M_contig121471:2..487+ (Macrocystis pyrifera P11B4 male)
GACAGGGTGGGCGTGATTATTGAGCTGAAATACTACGGCCACGATGAGCA
GTTGGAGCAGCGGGTGGTGGACATTGTCGAAGCAGCGGGTATGGCCAAGC
AGGTGATGATCATGTCACTCAAACCCAAGCGGGTGGCGAAGACCAAAGCC
TTGCGACCAGACTGGAAATGTGGCGTCTTACTCTCTGTCTATGCAGGCAA
CCTGAAAGAGATTAAAGCAGACTTTCTGGCCGTGAACGCGAACTTCGCCT
CGCGAAATTTTGTGAAGCGGGCTCATAAAGCGGGGAAAGAGGTCTTTGTG
TGGACGGTCGATGACCCGGCCATGATGTCTCAAATGATGAACCGGGGCGT
GGATGGATTGCTGACGAATGTCCCCGCGGTGGCGAAGCAGGTGATCCAGG
AACGCGAGTCGCTCACCCCTGCAGAACGGCTGCTGGTGGAGGTGGCGCTA
CTGTTTCAAGAACCGCAGGCAGAGCTGGAGCAGTGAGACAGGGTGGGCGT
GATTATTGAGCTGAAATACTACGGCCACGATGAGCAGTTGGAGCAGCGGG
TGGTGGACATTGTCGAAGCAGCGGGTATGGCCAAGCAGGTGATGATCATG
TCACTCAAACCCAAGCGGGTGGCGAAGACCAAAGCCTTGCGACCAGACTG
GAAATGTGGCGTCTTACTCTCTGTCTATGCAGGCAACCTGAAAGAGATTA
AAGCAGACTTTCTGGCCGTGAACGCGAACTTCGCCTCGCGAAATTTTGTG
AAGCGGGCTCATAAAGCGGGGAAAGAGGTCTTTGTGTGGACGGTCGATGA
CCCGGCCATGATGTCTCAAATGATGAACCGGGGCGTGGATGGATTGCTGA
CGAATGTCCCCGCGGTGGCGAAGCAGGTGATCCAGGAACGCGAGTCGCTC
ACCCCTGCAGAACGGCTGCTGGTGGAGGTGGCGCTACTGTTTCAAGAACC
GCAGGCAGAGCTGGAGCAGTGA
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