mRNA_M-pyrifera_M_contig121444.4412.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121444.4412.1
Unique NamemRNA_M-pyrifera_M_contig121444.4412.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121444.4412.1 vs. uniprot
Match: A0A517PHV7_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PHV7_9PLAN)

HSP 1 Score: 332 bits (850), Expect = 1.370e-110
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1
Query:    1 GIAYQLTTLTGVLNEHFWETRQGSADRIHETAFGLVFAATALAYEVVELRSHNRFSGLAVLRSVTECAINMSFLTKKNEPALWYKFRQYGSGQAHLISEKLEHELANTHCVDSDWINAYLQEEQAKYFTDIELGDWSGENIRSRAEKGGTKDLYDSYYDYSS 486
            GIAYQLTTLTGVLNEHFWETRQGSADRIHETAFGLVFAATALAYEVVELRSHNRFSGLAVLRSVTECAINMSFLTKKNEPALWYKFRQYGSGQAHLISEKLEHELANTHCVDSDWINAYLQEEQAKYFTDIELGDWSGENIRSRAEKGGTKDLYDSYYDYSS
Sbjct:  250 GIAYQLTTLTGVLNEHFWETRQGSADRIHETAFGLVFAATALAYEVVELRSHNRFSGLAVLRSVTECAINMSFLTKKNEPALWYKFRQYGSGQAHLISEKLEHELANTHCVDSDWINAYLQEEQAKYFTDIELGDWSGENIRSRAEKGGTKDLYDSYYDYSS 411          
BLAST of mRNA_M-pyrifera_M_contig121444.4412.1 vs. uniprot
Match: A0A3E0N8W5_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0N8W5_9BACT)

HSP 1 Score: 225 bits (573), Expect = 1.060e-68
Identity = 107/161 (66.46%), Postives = 133/161 (82.61%), Query Frame = 1
Query:    4 IAYQLTTLTGVLNEHFWETRQGSADRIHETAFGLVFAATALAYEVVELRSHNRFSGLAVLRSVTECAINMSFLTKKNEPALWYKFRQYGSGQAHLISEKLEHELANTHCVDSDWINAYLQEEQAKYFTDIELGDWSGENIRSRAEKGGTKDLYDSYYDYSS 486
            +A  + ++   +++H+W +R  S DRIHETAFG+  AA ALA EV+ELRSH RFSGLA LR++TECAIN+SFL +KNEP LW +FR YGSGQAHLIS KL ++LA+ +CVDS WI A+LQEEQ+K F +IELGDWSG+N+RSRAE+ GTKDLYDSYYDYSS
Sbjct:  263 VACAIGSVAIAVSDHYWTSRNRSDDRIHETAFGIALAAAALANEVIELRSHTRFSGLASLRTITECAINLSFLVQKNEPDLWARFRLYGSGQAHLISTKLNNDLASANCVDSLWIEAFLQEEQSKDFINIELGDWSGDNLRSRAEESGTKDLYDSYYDYSS 423          
BLAST of mRNA_M-pyrifera_M_contig121444.4412.1 vs. uniprot
Match: UPI00052FEC52 (DUF5677 domain-containing protein n=1 Tax=Planococcus sp. CAU13 TaxID=1541197 RepID=UPI00052FEC52)

HSP 1 Score: 108 bits (269), Expect = 1.540e-24
Identity = 57/158 (36.08%), Postives = 86/158 (54.43%), Query Frame = 1
Query:   16 LTTLTGVLNEHFWETRQGSA-DRIHETAFGLVFAATALAYEVVELRSHNRFSGLAVLRSVTECAINMSFLTKKNEPALWYKFRQYGSGQAHLISEKLEHELANTHCVDSDWINAYLQEEQAKYFTDIELGDWSGENIRSRAEKGGTKDLYDSYYDYSS 486
            L  +   + EHF+E+R  SA D  HE AF        +  E+ +    N  +G   LR++ EC I +++L KKN+  LW  +R YGSGQA L   K++        V  D + A   E+Q + F++I LG W   N+R+ +E    KD+Y+SYYD++S
Sbjct:  258 LNEVENTIIEHFYESRSTSAIDAKHEAAFAFTLYCLDILKELTDSGIQNGITGRLGLRTIAECYITLAYLVKKNDEQLWLSYRSYGSGQAKLAFLKIDELEKQPQFVSLDTLEALANEDQWQEFSNINLGHWENSNLRAMSETARVKDVYNSYYDWTS 415          
BLAST of mRNA_M-pyrifera_M_contig121444.4412.1 vs. uniprot
Match: A0A7Z0LSX8_9GAMM (Uncharacterized protein n=1 Tax=Halomonas glaciei TaxID=186761 RepID=A0A7Z0LSX8_9GAMM)

HSP 1 Score: 97.4 bits (241), Expect = 1.170e-20
Identity = 53/158 (33.54%), Postives = 90/158 (56.96%), Query Frame = 1
Query:   16 LTTLTGVLNEHFWETRQG-SADRIHETAFGLVFAATALAYEVVELRSHNRFSGLAVLRSVTECAINMSFLTKKNEPALWYKFRQYGSGQAHLISEKLEHELANTHCVDSDWINAYLQEEQAKYFTDIELGDWSGENIRSRAEKGGTKDLYDSYYDYSS 486
            ++ L G L EH+  T    S D  H++ FG+ F A  L  E++ +       G   LR++ E  +++ +L  K+E ALW K+R YG+GQA L + + + ++     ++ DWI     E+  + F +IELG WSG ++R  +E+ G K+ YD++Y ++S
Sbjct:  261 ISDLLGKLEEHWQGTHSTTSVDARHDSVFGIAFYALRLIDELLGVGVGTGILGRLGLRTLLEAYVSLHYLLHKDEDALWKKWRAYGAGQAKLNALRFDADMEPPKFINIDWIEQIAGEDIWEEFLNIELGSWSGLDLRKLSERSGCKEQYDTHYSWTS 418          
BLAST of mRNA_M-pyrifera_M_contig121444.4412.1 vs. uniprot
Match: A0A1F4Y2F9_9BACT (Uncharacterized protein n=1 Tax=Candidatus Adlerbacteria bacterium RIFOXYC1_FULL_48_26 TaxID=1797247 RepID=A0A1F4Y2F9_9BACT)

HSP 1 Score: 97.4 bits (241), Expect = 1.320e-20
Identity = 53/159 (33.33%), Postives = 87/159 (54.72%), Query Frame = 1
Query:   13 QLTTLTGVLNEHFWETRQGS-ADRIHETAFGLVFAATALAYEVVELRSHNRFSGLAVLRSVTECAINMSFLTKKNEPALWYKFRQYGSGQAHLISEKLEHELANTHCVDSDWINAYLQEEQAKYFTDIELGDWSGENIRSRAEKGGTKDLYDSYYDYSS 486
            Q+  +  +L  H+ +T + S  +  H++ FGL F A  L  E+V         G  VLRS+ EC I +++L KK++P +W  FR YG G+  L   K          +D +++     E++ + F+DIEL  W+  ++R  +E+   KDLYD+YYD++S
Sbjct:  261 QVNRIRHLLLLHYLKTDESSDVEPRHDSIFGLGFYALRLVDELVATNLSRGVIGRIVLRSIVECYITLAYLIKKDDPKVWKDFRDYGIGKMKLSYLKTRDLKDKPSFIDEEFLKDIANEDRWEEFSDIELSHWASSDLRKMSEEADCKDLYDTYYDWTS 419          
BLAST of mRNA_M-pyrifera_M_contig121444.4412.1 vs. uniprot
Match: A0A0B4XZ79_9PROT (Uncharacterized protein n=2 Tax=Thalassospira xiamenensis TaxID=220697 RepID=A0A0B4XZ79_9PROT)

HSP 1 Score: 96.3 bits (238), Expect = 2.750e-20
Identity = 53/162 (32.72%), Postives = 87/162 (53.70%), Query Frame = 1
Query:    4 IAYQLTTLTGVLNEHFWETRQG-SADRIHETAFGLVFAATALAYEVVELRSHNRFSGLAVLRSVTECAINMSFLTKKNEPALWYKFRQYGSGQAHLISEKLEHELANTHCVDSDWINAYLQEEQAKYFTDIELGDWSGENIRSRAEKGGTKDLYDSYYDYSS 486
            ++ +L  +   ++ HF+ET    S D  H+ AFG+   A           S +R  G  +LR++ E  I + +LT+K++PALW K+R YG+GQ  L   K   E      +D   +     E+    F DI+LG+W+  ++R  + + G KD+YD+YYD++S
Sbjct:  223 LSKELIEIFQKIDSHFFETLSTTSIDPRHDGAFGIALYAITFLLNSAVGYSSSRPEGRVLLRTIAETYITLHYLTEKDDPALWQKYRHYGAGQTKLAFLKYLRETDVPDFIDMGMMEYLANEDMWLEFQDIDLGNWASLDLRKMSTEAGCKDVYDNYYDWTS 384          
BLAST of mRNA_M-pyrifera_M_contig121444.4412.1 vs. uniprot
Match: A0A1R3ESI0_9VIBR (Uncharacterized protein n=5 Tax=Vibrio TaxID=662 RepID=A0A1R3ESI0_9VIBR)

HSP 1 Score: 92.4 bits (228), Expect = 7.180e-19
Identity = 50/159 (31.45%), Postives = 87/159 (54.72%), Query Frame = 1
Query:   13 QLTTLTGVLNEHFWETRQGSA-DRIHETAFGLVFAATALAYEVVELRSHNRFSGLAVLRSVTECAINMSFLTKKNEPALWYKFRQYGSGQAHLISEKLEHELANTHCVDSDWINAYLQEEQAKYFTDIELGDWSGENIRSRAEKGGTKDLYDSYYDYSS 486
            ++  L   L +H+ +T   +  D  H+  FG+ F A ++  E+V +           LR++ E  I++ +L +KN+  LW K+R YG+GQA L + K +  +     ++++ + +   E+  + F +IELG WSG ++R  +EK G K  YD YY +SS
Sbjct:  262 EIHKLRDELEKHWGDTHSTTGVDAKHDGVFGIAFYALSVLSEIVSIGVSTGILARLGLRTILETHISLRYLIQKNDDQLWTKWRTYGAGQAKLNALKFDELVEPPKFINTETLESIAGEDLWEEFINIELGSWSGADLRKLSEKAGLKSAYDQYYSWSS 420          
BLAST of mRNA_M-pyrifera_M_contig121444.4412.1 vs. uniprot
Match: UPI0019D012CB (DUF5677 domain-containing protein n=1 Tax=Aurantimonas marina TaxID=2780508 RepID=UPI0019D012CB)

HSP 1 Score: 91.7 bits (226), Expect = 1.350e-18
Identity = 50/153 (32.68%), Postives = 81/153 (52.94%), Query Frame = 1
Query:   22 TLTGVLNEHFWET-RQGSADRIHETAFGLVFAATALAYEVVELRSHNRFSGLAVLRSVTECAINMSFLTKKNEPALWYKFRQYGSGQAHLISEKLEHELANTHCVDSDWINAYLQEEQAKYFTDIELGDWSGENIRSRAEKGGTKDLYDSYYD 477
            +L G +++H+    +    D   E +FGLV  AT+L  E+     H   +    LR++ EC IN+S+L+K++   +W +FR YG G+A L   K   E      +D + +  +  E+  + F DI+LG WS + +R  A     KD+YD +YD
Sbjct:  264 SLYGSISDHYHSCIKTTGIDPRLEASFGLVLFATSLYVEINSSSIHRLSASRIALRTIVECFINLSYLSKEDNETIWLQFRNYGIGKAKLAFLKNVDEDKTPDFIDVEKLEFFANEDYWQEFIDIDLGSWSSKTLRDIAVASSVKDVYDKHYD 416          
BLAST of mRNA_M-pyrifera_M_contig121444.4412.1 vs. uniprot
Match: A0A553V5N9_9DEIO (Uncharacterized protein n=2 Tax=Deinococcus detaillensis TaxID=2592048 RepID=A0A553V5N9_9DEIO)

HSP 1 Score: 90.1 bits (222), Expect = 4.470e-18
Identity = 52/151 (34.44%), Postives = 84/151 (55.63%), Query Frame = 1
Query:   37 LNEHFWETRQGSA-DRIHETAFGLVFAATALAYEVVELRSHNRFSGLAVLRSVTECAINMSFLTKKNEPALWYKFRQYGSGQAHLISEKLEHELANTHCVDSDWINAYLQEEQAKYFTDIELGDWSGENIRSRAEKGGTKDLYDSYYDYSS 486
            ++E F +T+  SA D  H+ AFGL+  A  +  E+ + + HN   G   LR+V E  I +S+L K ++P  W  +R YG+GQA L   KL    +    VD + +     E+  + F  I++G+W   N+R  +E    K++YDS+YD++S
Sbjct:  259 VSEAFIDTQTTSAIDTRHDGAFGLILYAIDICSEISQPKIHNGTLGRIGLRTVVEIFITLSYLIKLDDPKKWEAYRNYGAGQAKLAFLKLLDVESLPDFVDMEALEDLANEDLWQEFLTIKIGNWDAGNLRKMSEAADEKNIYDSFYDWTS 409          
BLAST of mRNA_M-pyrifera_M_contig121444.4412.1 vs. uniprot
Match: A0A2A4WSH4_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2A4WSH4_9GAMM)

HSP 1 Score: 90.1 bits (222), Expect = 4.900e-18
Identity = 50/159 (31.45%), Postives = 86/159 (54.09%), Query Frame = 1
Query:   13 QLTTLTGVLNEHFWETRQGSA-DRIHETAFGLVFAATALAYEVVELRSHNRFSGLAVLRSVTECAINMSFLTKKNEPALWYKFRQYGSGQAHLISEKLEHELANTHCVDSDWINAYLQEEQAKYFTDIELGDWSGENIRSRAEKGGTKDLYDSYYDYSS 486
            ++  L   L +H+ +T   +  D  H+  FG+ F A +   E+  +  +        LR++ E  IN+ +LT K++  LW K+R YG+GQA L + K +  +     +++D + +   E+  + F +IELG WSG ++R  ++K G K  YD YY +SS
Sbjct:  262 EIKKLRQELEKHWKKTHSTTGIDAKHDGVFGIAFYALSTLAEISSIGVNTGILARLGLRTILEMHINLKYLTLKDDLQLWSKWRTYGAGQAKLNALKFDELVEAPKFINTDTLESIAGEDLWEEFINIELGSWSGADLRKLSDKAGLKSSYDQYYSWSS 420          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121444.4412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A517PHV7_9PLAN1.370e-110100.00Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A3E0N8W5_9BACT1.060e-6866.46Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
UPI00052FEC521.540e-2436.08DUF5677 domain-containing protein n=1 Tax=Planococ... [more]
A0A7Z0LSX8_9GAMM1.170e-2033.54Uncharacterized protein n=1 Tax=Halomonas glaciei ... [more]
A0A1F4Y2F9_9BACT1.320e-2033.33Uncharacterized protein n=1 Tax=Candidatus Adlerba... [more]
A0A0B4XZ79_9PROT2.750e-2032.72Uncharacterized protein n=2 Tax=Thalassospira xiam... [more]
A0A1R3ESI0_9VIBR7.180e-1931.45Uncharacterized protein n=5 Tax=Vibrio TaxID=662 R... [more]
UPI0019D012CB1.350e-1832.68DUF5677 domain-containing protein n=1 Tax=Aurantim... [more]
A0A553V5N9_9DEIO4.470e-1834.44Uncharacterized protein n=2 Tax=Deinococcus detail... [more]
A0A2A4WSH4_9GAMM4.900e-1831.45Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121444contigM-pyrifera_M_contig121444:12..497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score105.9
Seed ortholog evalue1.8e-20
Seed eggNOG ortholog666684.AfiDRAFT_2080
Hectar predicted targeting categoryother localisation
EggNOG OGs1R5SB@1224,28JZ4@1,2UPEB@28211,2Z9P9@2
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size486
Cds size486
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815733.6420734-CDS-M-pyrifera_M_contig121444:11..4971622815733.6420734-CDS-M-pyrifera_M_contig121444:11..497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121444 12..497 -
1692277543.9817913-CDS-M-pyrifera_M_contig121444:11..4971692277543.9817913-CDS-M-pyrifera_M_contig121444:11..497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121444 12..497 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121444.4412.1prot_M-pyrifera_M_contig121444.4412.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121444 12..497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121444.4412.1

>prot_M-pyrifera_M_contig121444.4412.1 ID=prot_M-pyrifera_M_contig121444.4412.1|Name=mRNA_M-pyrifera_M_contig121444.4412.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=162bp
GIAYQLTTLTGVLNEHFWETRQGSADRIHETAFGLVFAATALAYEVVELR
SHNRFSGLAVLRSVTECAINMSFLTKKNEPALWYKFRQYGSGQAHLISEK
LEHELANTHCVDSDWINAYLQEEQAKYFTDIELGDWSGENIRSRAEKGGT
KDLYDSYYDYSS
back to top

mRNA from alignment at M-pyrifera_M_contig121444:12..497-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121444.4412.1 ID=mRNA_M-pyrifera_M_contig121444.4412.1|Name=mRNA_M-pyrifera_M_contig121444.4412.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig121444:12..497- (Macrocystis pyrifera P11B4 male)
GGTATCGCATATCAATTGACGACATTGACTGGAGTACTCAACGAGCATTT TTGGGAAACCCGACAAGGTAGTGCAGATCGAATTCATGAAACTGCATTTG GGCTAGTATTCGCCGCGACAGCATTGGCCTACGAAGTTGTTGAGTTACGG TCCCATAATCGATTCAGTGGGCTTGCTGTGCTTAGATCTGTTACCGAATG TGCAATTAACATGTCATTCTTAACAAAGAAAAATGAACCAGCCCTGTGGT ACAAATTTCGACAGTACGGCAGTGGACAAGCACACCTAATTTCAGAGAAG TTAGAGCATGAATTAGCAAATACGCATTGTGTGGATAGTGATTGGATTAA CGCTTATTTACAGGAAGAACAAGCAAAGTATTTCACAGATATCGAATTAG GTGATTGGTCGGGAGAGAATATTCGATCCCGAGCTGAAAAAGGTGGCACA AAGGATCTCTATGATTCATATTATGATTATTCGTCT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig121444:12..497-

>mRNA_M-pyrifera_M_contig121444.4412.1 ID=mRNA_M-pyrifera_M_contig121444.4412.1|Name=mRNA_M-pyrifera_M_contig121444.4412.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=972bp|location=Sequence derived from alignment at M-pyrifera_M_contig121444:12..497- (Macrocystis pyrifera P11B4 male)
GGTATCGCATATCAATTGACGACATTGACTGGAGTACTCAACGAGCATTT
TTGGGAAACCCGACAAGGTAGTGCAGATCGAATTCATGAAACTGCATTTG
GGCTAGTATTCGCCGCGACAGCATTGGCCTACGAAGTTGTTGAGTTACGG
TCCCATAATCGATTCAGTGGGCTTGCTGTGCTTAGATCTGTTACCGAATG
TGCAATTAACATGTCATTCTTAACAAAGAAAAATGAACCAGCCCTGTGGT
ACAAATTTCGACAGTACGGCAGTGGACAAGCACACCTAATTTCAGAGAAG
TTAGAGCATGAATTAGCAAATACGCATTGTGTGGATAGTGATTGGATTAA
CGCTTATTTACAGGAAGAACAAGCAAAGTATTTCACAGATATCGAATTAG
GTGATTGGTCGGGAGAGAATATTCGATCCCGAGCTGAAAAAGGTGGCACA
AAGGATCTCTATGATTCATATTATGATTATTCGTCTGGTATCGCATATCA
ATTGACGACATTGACTGGAGTACTCAACGAGCATTTTTGGGAAACCCGAC
AAGGTAGTGCAGATCGAATTCATGAAACTGCATTTGGGCTAGTATTCGCC
GCGACAGCATTGGCCTACGAAGTTGTTGAGTTACGGTCCCATAATCGATT
CAGTGGGCTTGCTGTGCTTAGATCTGTTACCGAATGTGCAATTAACATGT
CATTCTTAACAAAGAAAAATGAACCAGCCCTGTGGTACAAATTTCGACAG
TACGGCAGTGGACAAGCACACCTAATTTCAGAGAAGTTAGAGCATGAATT
AGCAAATACGCATTGTGTGGATAGTGATTGGATTAACGCTTATTTACAGG
AAGAACAAGCAAAGTATTTCACAGATATCGAATTAGGTGATTGGTCGGGA
GAGAATATTCGATCCCGAGCTGAAAAAGGTGGCACAAAGGATCTCTATGA
TTCATATTATGATTATTCGTCT
back to top