mRNA_M-pyrifera_M_contig121429.4409.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121429.4409.1
Unique NamemRNA_M-pyrifera_M_contig121429.4409.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121429.4409.1 vs. uniprot
Match: L1JML6_GUITC (Uncharacterized protein n=6 Tax=Guillardia theta TaxID=55529 RepID=L1JML6_GUITC)

HSP 1 Score: 188 bits (477), Expect = 3.370e-56
Identity = 94/156 (60.26%), Postives = 116/156 (74.36%), Query Frame = 1
Query:    1 LDYHFFLPVFMSGLREVEEPYQGLALHGTLDLLEAAPSKVVKCIPQLAVPIHEALTTRDPRIIRRVLLVLQAMVKEGAEHGVGEALVPYFRQILPILNIFKEANESTGDMIVYGQRKQECLGDLINETLQLLEIYGGELAFVNIRYFIPTYESAVV 468
            LDYH +LP+F  GLRE EEPY+ LA+ GT D+LE   +K++  IPQL +PI  AL TR+P +I  VL VLQ +V  G    +GEALVPY+RQILP+LNIFK  N + GD IVY QRK+  LGDLI ETL+LLE +GGE AF+NI+Y IPTYES V+
Sbjct:  172 LDYHHYLPIFFDGLREKEEPYRFLAVQGTFDMLEHGGTKILPVIPQLIIPIKTALNTREPGVIVIVLKVLQQLVVSG--EMIGEALVPYYRQILPVLNIFKNRNVNVGDCIVYNQRKRMILGDLIQETLELLETHGGEDAFINIKYMIPTYESCVL 325          
BLAST of mRNA_M-pyrifera_M_contig121429.4409.1 vs. uniprot
Match: A0A7S0LVP2_9EUKA (Hypothetical protein n=2 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LVP2_9EUKA)

HSP 1 Score: 183 bits (465), Expect = 3.640e-56
Identity = 92/156 (58.97%), Postives = 115/156 (73.72%), Query Frame = 1
Query:    1 LDYHFFLPVFMSGLREVEEPYQGLALHGTLDLLEAAPSKVVKCIPQLAVPIHEALTTRDPRIIRRVLLVLQAMVKEGAEHGVGEALVPYFRQILPILNIFKEANESTGDMIVYGQRKQECLGDLINETLQLLEIYGGELAFVNIRYFIPTYESAVV 468
            LDYH +LP+F  GLRE EEPY+ LA+ G  D+LE   SK++  IPQL +PI  AL TRD  +I  VL VLQ+MV  G    +GEALVPY+RQILPI NIFK +N++ GD I YGQ+K+  LGDLI ETL++ E +GGE AF+NI+Y IPTYES V+
Sbjct:   33 LDYHHYLPIFFDGLREKEEPYRFLAVQGVFDMLEHGGSKILPVIPQLIIPIKTALNTRDSDVICTVLKVLQSMVVSG--EMIGEALVPYYRQILPIFNIFKNSNKNLGDGIDYGQQKRRTLGDLIIETLEMFETHGGEDAFINIKYMIPTYESCVL 186          
BLAST of mRNA_M-pyrifera_M_contig121429.4409.1 vs. uniprot
Match: A0A6U4Q6K4_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A6U4Q6K4_HEMAN)

HSP 1 Score: 186 bits (473), Expect = 1.350e-55
Identity = 94/156 (60.26%), Postives = 114/156 (73.08%), Query Frame = 1
Query:    1 LDYHFFLPVFMSGLREVEEPYQGLALHGTLDLLEAAPSKVVKCIPQLAVPIHEALTTRDPRIIRRVLLVLQAMVKEGAEHGVGEALVPYFRQILPILNIFKEANESTGDMIVYGQRKQECLGDLINETLQLLEIYGGELAFVNIRYFIPTYESAVV 468
            LDYH +LP+F  GLRE EEPY+ LA+ GT D+LE    K++  IPQL +PI  AL TR P +I  VL VLQ +V  G    +GEALVPY+RQILP+LNIFK  N + GD IVY QRK+  LGDLI ETL+LLE +GGE AF+NI+Y IPTYES V+
Sbjct:  172 LDYHHYLPIFFDGLRENEEPYRFLAVQGTFDMLEHGAGKILPVIPQLIIPIKTALNTRQPGVIVIVLKVLQQLVVSG--EMIGEALVPYYRQILPVLNIFKNRNVNVGDNIVYNQRKRMILGDLIQETLELLETHGGEDAFINIKYMIPTYESCVL 325          
BLAST of mRNA_M-pyrifera_M_contig121429.4409.1 vs. uniprot
Match: A0A7S0ANC3_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0ANC3_9DINO)

HSP 1 Score: 181 bits (458), Expect = 1.520e-55
Identity = 89/157 (56.69%), Postives = 114/157 (72.61%), Query Frame = 1
Query:    1 LDYHFFLPVFMSGLREVEEPYQGLALHGTLDLLEAAPSKVVKCIPQLAVPIHEALTTRDPRIIRRVLLVLQAMVKEGAEHGVGEALVPYFRQILPILNIFKEANESTGDMIVYGQRKQECLGDLINETLQLLEIYGGELAFVNIRYFIPTYESAVVA 471
            LDYH +LP+F  G+RE EEPY+ L++ G  D+LE   SKV+  +PQL +PI  AL TRDP I+   L VLQA+V  G    +GEALVPY+RQILP+ N++K  N + GD + Y QRK++ LGDLI ETL LLEI+GGE AF+NI+Y IP YES V+A
Sbjct:    1 LDYHHYLPIFFDGIREKEEPYRFLSVQGVDDMLEKGGSKVLPVVPQLIIPIKTALNTRDPEIMATTLKVLQALVLSG--DMIGEALVPYYRQILPVFNVYKNRNTNLGDGMDYSQRKRQNLGDLIEETLALLEIHGGEDAFINIKYMIPVYESVVLA 155          
BLAST of mRNA_M-pyrifera_M_contig121429.4409.1 vs. uniprot
Match: A0A7S4B761_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B761_CHRCT)

HSP 1 Score: 186 bits (471), Expect = 2.050e-55
Identity = 92/156 (58.97%), Postives = 116/156 (74.36%), Query Frame = 1
Query:    1 LDYHFFLPVFMSGLREVEEPYQGLALHGTLDLLEAAPSKVVKCIPQLAVPIHEALTTRDPRIIRRVLLVLQAMVKEGAEHGVGEALVPYFRQILPILNIFKEANESTGDMIVYGQRKQECLGDLINETLQLLEIYGGELAFVNIRYFIPTYESAVV 468
            LDYH +LP+F  GLRE EEPY+ L++ G  D+LE   SK++  IPQL +PI  AL TRDP +I  VL VLQ MV  G    +GEALVPY+RQILPI NIFK +N++ GD I YGQ+K++ LGDLI ETL++ E +GGE AF+NI+Y IPTYES V+
Sbjct:  162 LDYHHYLPIFFDGLREKEEPYRFLSVQGVFDMLEHGGSKILPVIPQLIIPIKTALNTRDPDVICTVLKVLQQMVVSG--EMIGEALVPYYRQILPIFNIFKNSNKNLGDKIDYGQQKRKTLGDLIVETLEMFETHGGEDAFINIKYMIPTYESCVL 315          
BLAST of mRNA_M-pyrifera_M_contig121429.4409.1 vs. uniprot
Match: C1MVQ7_MICPC (Predicted protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MVQ7_MICPC)

HSP 1 Score: 182 bits (461), Expect = 2.210e-55
Identity = 88/155 (56.77%), Postives = 114/155 (73.55%), Query Frame = 1
Query:    1 LDYHFFLPVFMSGLREVEEPYQGLALHGTLDLLEAAPSKVVKCIPQLAVPIHEALTTRDPRIIRRVLLVLQAMVKEGAEHGVGEALVPYFRQILPILNIFKEANESTGDMIVYGQRKQECLGDLINETLQLLEIYGGELAFVNIRYFIPTYESAV 465
            LD+H +LP+FM G+RE EEPY+ LA+ G  DLL+A   K++  IPQL +PI  AL TRDP ++  V+ +LQ +V       VGEALVPY+RQILPILN+FK  N + GD I YGQRK+ C+G+LI +TLQL E YGGE AF+NI+Y +PTYES +
Sbjct:   47 LDFHHYLPIFMDGVREKEEPYRFLAVKGVEDLLKAGGQKILPVIPQLIIPIKTALNTRDPSVVCIVVQLLQKLVVSA--ELVGEALVPYYRQILPILNLFKNRNNNVGDAIDYGQRKKACMGELILDTLQLFETYGGEDAFINIKYMVPTYESCI 199          
BLAST of mRNA_M-pyrifera_M_contig121429.4409.1 vs. uniprot
Match: A0A7J6R0B7_PEROL (Uncharacterized protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6R0B7_PEROL)

HSP 1 Score: 181 bits (458), Expect = 2.230e-55
Identity = 88/153 (57.52%), Postives = 111/153 (72.55%), Query Frame = 1
Query:    1 LDYHFFLPVFMSGLREVEEPYQGLALHGTLDLLEAAPSKVVKCIPQLAVPIHEALTTRDPRIIRRVLLVLQAMVKEGAEHGVGEALVPYFRQILPILNIFKEANESTGDMIVYGQRKQECLGDLINETLQLLEIYGGELAFVNIRYFIPTYES 459
            LDYH +LP+F  G+RE EEPY+ LA+ G  DLLE   SK++  IPQL +PI  AL TRDP +I   L +LQ +V  G    VGEALVPY+RQILP+ NIFK +N  + D + YGQRK+  LGDL+ ETL++ EI+GGE AF+NI+Y IPTYES
Sbjct:   11 LDYHHYLPIFFDGIREKEEPYRFLAVEGVYDLLERGGSKILPVIPQLIIPIKTALNTRDPEVIATTLKMLQTLVLSG--EMVGEALVPYYRQILPVFNIFKNSNTHSKDKMDYGQRKRLVLGDLVEETLEIFEIHGGEDAFINIKYMIPTYES 161          
BLAST of mRNA_M-pyrifera_M_contig121429.4409.1 vs. uniprot
Match: D2UXD6_NAEGR (Uncharacterized protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2UXD6_NAEGR)

HSP 1 Score: 186 bits (471), Expect = 2.840e-55
Identity = 95/156 (60.90%), Postives = 114/156 (73.08%), Query Frame = 1
Query:    1 LDYHFFLPVFMSGLREVEEPYQGLALHGTLDLLEAAPSKVVKCIPQLAVPIHEALTTRDPRIIRRVLLVLQAMVKEGAEHGVGEALVPYFRQILPILNIFKEANESTGDMIVYGQRKQECLGDLINETLQLLEIYGGELAFVNIRYFIPTYESAVV 468
            LDYH +LP+F  GLRE EEPY+ LA+ GT DLL+    K+V CIPQL +PI  AL TRDP II  VL V+Q +V    +  VGEALVPY+RQILPI N+FK  N + GD I Y QRK+  +GDLI ETLQLLE  GGE AF+NI+Y IPTYES+V+
Sbjct:  174 LDYHHYLPIFFDGLREKEEPYRFLAVQGTFDLLKYGKDKIVNCIPQLIIPIKTALNTRDPEIICTVLKVIQQLVLSNEK--VGEALVPYYRQILPIFNLFKTNNINLGDAIEYSQRKRLNIGDLIEETLQLLEQEGGEDAFINIKYMIPTYESSVL 327          
BLAST of mRNA_M-pyrifera_M_contig121429.4409.1 vs. uniprot
Match: A0A6A5BPF7_NAEFO (Uncharacterized protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BPF7_NAEFO)

HSP 1 Score: 186 bits (472), Expect = 3.780e-55
Identity = 95/156 (60.90%), Postives = 114/156 (73.08%), Query Frame = 1
Query:    1 LDYHFFLPVFMSGLREVEEPYQGLALHGTLDLLEAAPSKVVKCIPQLAVPIHEALTTRDPRIIRRVLLVLQAMVKEGAEHGVGEALVPYFRQILPILNIFKEANESTGDMIVYGQRKQECLGDLINETLQLLEIYGGELAFVNIRYFIPTYESAVV 468
            LDYH +LP+F  GLRE EEPY+ LA+ GT DLL+    K+V CIPQL +PI  AL TRDP II  VL V+Q +V     + VGEALVPY+RQILPI N+FK  N + GD I Y QRK+  +GDLI ETLQLLE  GGE AF+NI+Y IPTYES+V+
Sbjct:  198 LDYHHYLPIFFDGLREKEEPYRFLAVQGTFDLLKYGKDKIVNCIPQLIIPIKTALNTRDPEIICTVLKVIQQLVLSN--NKVGEALVPYYRQILPIFNLFKTQNINLGDAIEYSQRKRLNIGDLIEETLQLLEQEGGEDAFINIKYMIPTYESSVL 351          
BLAST of mRNA_M-pyrifera_M_contig121429.4409.1 vs. uniprot
Match: A0A7S4FKM6_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FKM6_9EUGL)

HSP 1 Score: 184 bits (466), Expect = 5.330e-55
Identity = 93/156 (59.62%), Postives = 113/156 (72.44%), Query Frame = 1
Query:    1 LDYHFFLPVFMSGLREVEEPYQGLALHGTLDLLEAAPSKVVKCIPQLAVPIHEALTTRDPRIIRRVLLVLQAMVKEGAEHGVGEALVPYFRQILPILNIFKEANESTGDMIVYGQRKQECLGDLINETLQLLEIYGGELAFVNIRYFIPTYESAVV 468
            LDYH +LP+F  GLRE EEPY+ L+  G  DLLE   SK++  IPQL +PI  AL TRD  II  +L VLQ +V  G    +GEALVPY+RQILP+ N+FK  N ++GD I YGQRK+  LGDLI ETLQL EI+GGE AF+NI+Y IPTYES V+
Sbjct:  134 LDYHHYLPIFFDGLREKEEPYRFLSQQGCFDLLEKGGSKILPTIPQLIIPIKTALNTRDAEIIVCMLKVLQQLVVSG--ELIGEALVPYYRQILPVFNLFKAQNHNSGDQIEYGQRKRAVLGDLIEETLQLFEIHGGEDAFINIKYMIPTYESYVL 287          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121429.4409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L1JML6_GUITC3.370e-5660.26Uncharacterized protein n=6 Tax=Guillardia theta T... [more]
A0A7S0LVP2_9EUKA3.640e-5658.97Hypothetical protein n=2 Tax=Coccolithus braarudii... [more]
A0A6U4Q6K4_HEMAN1.350e-5560.26Hypothetical protein n=2 Tax=Hemiselmis TaxID=7792... [more]
A0A7S0ANC3_9DINO1.520e-5556.69Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]
A0A7S4B761_CHRCT2.050e-5558.97Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
C1MVQ7_MICPC2.210e-5556.77Predicted protein (Fragment) n=1 Tax=Micromonas pu... [more]
A0A7J6R0B7_PEROL2.230e-5557.52Uncharacterized protein n=1 Tax=Perkinsus olseni T... [more]
D2UXD6_NAEGR2.840e-5560.90Uncharacterized protein n=1 Tax=Naegleria gruberi ... [more]
A0A6A5BPF7_NAEFO3.780e-5560.90Uncharacterized protein n=2 Tax=Naegleria TaxID=57... [more]
A0A7S4FKM6_9EUGL5.330e-5559.62Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121429contigM-pyrifera_M_contig121429:40..534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.6
Seed ortholog evalue5.6e-40
Seed eggNOG ortholog55529.EKX49826
Preferred namePACRG
Hectar predicted targeting categoryother localisation
EggNOG free text desc.negative regulation of cell death
EggNOG OGsKOG3961@1,KOG3961@2759
Ec32 ortholog descriptionParkin co-regulated protein
Ec32 orthologEc-26_001970.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size495
Cds size465
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815733.5286365-CDS-M-pyrifera_M_contig121429:39..5041622815733.5286365-CDS-M-pyrifera_M_contig121429:39..504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121429 40..504 -
1692277543.9203908-CDS-M-pyrifera_M_contig121429:39..5041692277543.9203908-CDS-M-pyrifera_M_contig121429:39..504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121429 40..504 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815733.5385888-UTR-M-pyrifera_M_contig121429:504..5341622815733.5385888-UTR-M-pyrifera_M_contig121429:504..534Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121429 505..534 -
1692277543.9375153-UTR-M-pyrifera_M_contig121429:504..5341692277543.9375153-UTR-M-pyrifera_M_contig121429:504..534Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121429 505..534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121429.4409.1prot_M-pyrifera_M_contig121429.4409.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121429 40..504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121429.4409.1

>prot_M-pyrifera_M_contig121429.4409.1 ID=prot_M-pyrifera_M_contig121429.4409.1|Name=mRNA_M-pyrifera_M_contig121429.4409.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
MSGLREVEEPYQGLALHGTLDLLEAAPSKVVKCIPQLAVPIHEALTTRDP
RIIRRVLLVLQAMVKEGAEHGVGEALVPYFRQILPILNIFKEANESTGDM
IVYGQRKQECLGDLINETLQLLEIYGGELAFVNIRYFIPTYESAVVAVTT
APEA*
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mRNA from alignment at M-pyrifera_M_contig121429:40..534-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121429.4409.1 ID=mRNA_M-pyrifera_M_contig121429.4409.1|Name=mRNA_M-pyrifera_M_contig121429.4409.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=495bp|location=Sequence derived from alignment at M-pyrifera_M_contig121429:40..534- (Macrocystis pyrifera P11B4 male)
CTTGACTATCATTTCTTTCTCCCAGTGTTCATGTCTGGATTGCGAGAAGT GGAAGAACCATACCAAGGTCTTGCATTGCATGGAACGCTGGATTTACTGG AAGCTGCACCCAGCAAAGTTGTCAAATGCATTCCACAGCTCGCAGTTCCG ATCCATGAAGCCTTGACCACTCGAGATCCGCGCATCATCCGTCGTGTTCT TCTTGTCTTGCAAGCCATGGTCAAAGAAGGAGCAGAACACGGCGTTGGAG AAGCACTCGTTCCTTATTTCCGTCAAATCCTCCCCATCCTCAACATTTTC AAGGAAGCCAATGAATCCACTGGCGACATGATTGTCTATGGCCAAAGAAA GCAAGAATGCCTTGGTGATCTCATCAACGAAACGCTACAACTCCTCGAAA TCTATGGTGGAGAACTTGCGTTTGTCAATATCCGCTACTTCATTCCCACC TACGAATCTGCTGTCGTCGCAGTTACCACAGCACCTGAAGCATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121429:40..534-

>mRNA_M-pyrifera_M_contig121429.4409.1 ID=mRNA_M-pyrifera_M_contig121429.4409.1|Name=mRNA_M-pyrifera_M_contig121429.4409.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig121429:40..534- (Macrocystis pyrifera P11B4 male)
ATGTCTGGATTGCGAGAAGTGGAAGAACCATACCAAGGTCTTGCATTGCA
TGGAACGCTGGATTTACTGGAAGCTGCACCCAGCAAAGTTGTCAAATGCA
TTCCACAGCTCGCAGTTCCGATCCATGAAGCCTTGACCACTCGAGATCCG
CGCATCATCCGTCGTGTTCTTCTTGTCTTGCAAGCCATGGTCAAAGAAGG
AGCAGAACACGGCGTTGGAGAAGCACTCGTTCCTTATTTCCGTCAAATCC
TCCCCATCCTCAACATTTTCAAGGAAGCCAATGAATCCACTGGCGACATG
ATTGTCTATGGCCAAAGAAAGCAAGAATGCCTTGGTGATCTCATCAACGA
AACGCTACAACTCCTCGAAATCTATGGTGGAGAACTTGCGTTTGTCAATA
TCCGCTACTTCATTCCCACCTACGAATCTGCTGTCGTCGCAGTTACCACA
GCACCTGAAGCATAAATGTCTGGATTGCGAGAAGTGGAAGAACCATACCA
AGGTCTTGCATTGCATGGAACGCTGGATTTACTGGAAGCTGCACCCAGCA
AAGTTGTCAAATGCATTCCACAGCTCGCAGTTCCGATCCATGAAGCCTTG
ACCACTCGAGATCCGCGCATCATCCGTCGTGTTCTTCTTGTCTTGCAAGC
CATGGTCAAAGAAGGAGCAGAACACGGCGTTGGAGAAGCACTCGTTCCTT
ATTTCCGTCAAATCCTCCCCATCCTCAACATTTTCAAGGAAGCCAATGAA
TCCACTGGCGACATGATTGTCTATGGCCAAAGAAAGCAAGAATGCCTTGG
TGATCTCATCAACGAAACGCTACAACTCCTCGAAATCTATGGTGGAGAAC
TTGCGTTTGTCAATATCCGCTACTTCATTCCCACCTACGAATCTGCTGTC
GTCGCAGTTACCACAGCACCTGAAGCATAA
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