mRNA_M-pyrifera_M_contig121426.4407.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig121426.4407.1
Unique Name	mRNA_M-pyrifera_M_contig121426.4407.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig121426.4407.1 vs. uniprot
Match: A0A7Y6PTQ7_9DELT (Uncharacterized protein n=1 Tax=Kofleriaceae bacterium TaxID=2212474 RepID=A0A7Y6PTQ7_9DELT)

HSP 1 Score: 63.9 bits (154), Expect = 2.800e-10
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1

Query:    1 DAGQVPRLMCPLSEIPPEHINHRAAFLLTRLSQAMTLDELLDVSGMPKLEALRHLCGL 174
            D  + P+L  PL E+    I+ RAAFLL+R+   +T+DELLDVSGMP++EA RHLC L
Sbjct:  480 DLERQPQLAKPLHELGNAPISPRAAFLLSRIDGTLTIDELLDVSGMPRMEAYRHLCQL 537

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BLAST of mRNA_M-pyrifera_M_contig121426.4407.1 vs. uniprot
Match: A0A7W1A1Z7_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7W1A1Z7_9DELT)

HSP 1 Score: 61.2 bits (147), Expect = 2.500e-9
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 1

Query:    1 DAGQVPRLMCPLSEIPPEHINHRAAFLLTRLSQAMTLDELLDVSGMPKLEALRHLCGL 174
            D  + P L  PL E+    I+ RAAFLL+R+  +++LDE+LDVSGMP+LEA R+LC L
Sbjct:  529 DLNRQPVLARPLHELSTSPISPRAAFLLSRVDGSLSLDEILDVSGMPRLEAYRYLCQL 586

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BLAST of mRNA_M-pyrifera_M_contig121426.4407.1 vs. uniprot
Match: A0A7W1AHI0_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7W1AHI0_9DELT)

HSP 1 Score: 61.2 bits (147), Expect = 2.510e-9
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 1

Query:    1 DAGQVPRLMCPLSEIPPEHINHRAAFLLTRLSQAMTLDELLDVSGMPKLEALRHLCGL 174
            D  + P+L  PL E+    I+ RAAFLL+R+   +++DE+LDV GMP+LEA RHLC L
Sbjct:  582 DLMRTPQLARPLHELASAPISPRAAFLLSRIDGLLSIDEILDVCGMPRLEAYRHLCQL 639

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BLAST of mRNA_M-pyrifera_M_contig121426.4407.1 vs. uniprot
Match: A0A7W1B8S8_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7W1B8S8_9DELT)

HSP 1 Score: 60.5 bits (145), Expect = 3.220e-9
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 1

Query:    1 DAGQVPRLMCPLSEIPPEHINHRAAFLLTRLSQAMTLDELLDVSGMPKLEALRHLCGL 174
            D  + P L  PL E+    I+ RAAFLL+R+   ++LDE+LDVSGMP+LEA R+LC L
Sbjct:  204 DLQRQPMLSRPLHELSNTAISPRAAFLLSRIDGVLSLDEILDVSGMPRLEAYRYLCQL 261

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BLAST of mRNA_M-pyrifera_M_contig121426.4407.1 vs. uniprot
Match: A0A538PSM2_9DELT (Uncharacterized protein n=2 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A538PSM2_9DELT)

HSP 1 Score: 60.8 bits (146), Expect = 3.440e-9
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 1

Query:    1 DAGQVPRLMCPLSEIPPEHINHRAAFLLTRLSQAMTLDELLDVSGMPKLEALRHLCGL 174
            D  + P L  PL E+    I+ RAAFLL+R+   ++LDE+LDVSGMP+LEA R+LC L
Sbjct:  657 DLQRTPSLARPLHELGSAPISPRAAFLLSRVDGTLSLDEILDVSGMPRLEAYRYLCQL 714

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BLAST of mRNA_M-pyrifera_M_contig121426.4407.1 vs. uniprot
Match: A0A7W0VGJ0_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7W0VGJ0_9DELT)

HSP 1 Score: 60.5 bits (145), Expect = 4.670e-9
Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 1

Query:   16 PRLMCPLSEIPPEHINHRAAFLLTRLSQAMTLDELLDVSGMPKLEALRHLCGL 174
            P L  PL E+    I+ RAAFLL+R+  ++TLDE+LD+SGMP+LEA R+LC L
Sbjct:  495 PSLARPLHELGSAPISPRAAFLLSRIDGSVTLDEILDISGMPRLEAYRYLCQL 547

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BLAST of mRNA_M-pyrifera_M_contig121426.4407.1 vs. uniprot
Match: UPI0019A73779 (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=UPI0019A73779)

HSP 1 Score: 60.1 bits (144), Expect = 6.200e-9
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 1

Query:    1 DAGQVPRLMCPLSEIPPEHINHRAAFLLTRLSQAMTLDELLDVSGMPKLEALRHLCGL 174
            D  + P L  PL E+    I+ RAAFLL+R+   ++LDE+LDVSGMP+LEA R+LC L
Sbjct:  325 DLQRSPSLARPLHELGSAPISPRAAFLLSRVDGTLSLDEILDVSGMPRLEAYRYLCQL 382

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BLAST of mRNA_M-pyrifera_M_contig121426.4407.1 vs. uniprot
Match: A0A7V9LCG4_9DELT (Tetratricopeptide repeat protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V9LCG4_9DELT)

HSP 1 Score: 59.3 bits (142), Expect = 1.190e-8
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1

Query:   16 PRLMCPLSEIPPEHINHRAAFLLTRLSQAMTLDELLDVSGMPKLEALRHLCGL 174
            P L  PL E+    I+ RAAFLL+R+   +T+DELLDVSGMP+LEA R+LC L
Sbjct:  470 PILARPLHELANAPISPRAAFLLSRIDGMVTMDELLDVSGMPRLEAYRYLCQL 522

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BLAST of mRNA_M-pyrifera_M_contig121426.4407.1 vs. uniprot
Match: A0A7W1MIC4_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7W1MIC4_9DELT)

HSP 1 Score: 58.2 bits (139), Expect = 1.950e-8
Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 1

Query:    1 DAGQVPRLMCPLSEIPPEHINHRAAFLLTRLSQAMTLDELLDVSGMPKLEALRHLCGL 174
            D  + P+L  PL E+    I+ RAAFLL+R+   +++DE+LDV GMP+LEA R+LC L
Sbjct:  182 DLQRQPQLARPLHELASAPISPRAAFLLSRVDGQLSIDEILDVCGMPRLEAYRYLCQL 239

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BLAST of mRNA_M-pyrifera_M_contig121426.4407.1 vs. uniprot
Match: A0A7W0QDX8_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7W0QDX8_9DELT)

HSP 1 Score: 58.5 bits (140), Expect = 2.230e-8
Identity = 28/60 (46.67%), Postives = 42/60 (70.00%), Query Frame = 1

Query:    1 DAGQVPRLMCPLSEIPPEHINHRAAFLLTRLSQAMTLDELLDVSGMPKLEALRHLCGLHV 180
            D  + P+L  PL E+    I+ RAAFLL+R+   +++DE+LD+ GMP+LEA R+LC L +
Sbjct:  500 DLQRQPQLARPLHELASAPISPRAAFLLSRIDGQVSIDEILDICGMPRLEAFRYLCQLQL 559

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig121426.4407.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig121426.4407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 19


Match Name	E-value	Identity	Description
A0A7Y6PTQ7_9DELT	2.800e-10	55.17	Uncharacterized protein n=1 Tax=Kofleriaceae bacte...	[more]
A0A7W1A1Z7_9DELT	2.500e-9	53.45	Uncharacterized protein n=1 Tax=Deltaproteobacteri...	[more]
A0A7W1AHI0_9DELT	2.510e-9	51.72	Uncharacterized protein n=1 Tax=Deltaproteobacteri...	[more]
A0A7W1B8S8_9DELT	3.220e-9	53.45	Uncharacterized protein n=1 Tax=Deltaproteobacteri...	[more]
A0A538PSM2_9DELT	3.440e-9	53.45	Uncharacterized protein n=2 Tax=Deltaproteobacteri...	[more]
A0A7W0VGJ0_9DELT	4.670e-9	56.60	Uncharacterized protein n=1 Tax=Deltaproteobacteri...	[more]
UPI0019A73779	6.200e-9	53.45	Uncharacterized protein n=1 Tax=Myxococcales bacte...	[more]
A0A7V9LCG4_9DELT	1.190e-8	58.49	Tetratricopeptide repeat protein n=1 Tax=Deltaprot...	[more]
A0A7W1MIC4_9DELT	1.950e-8	50.00	Uncharacterized protein n=1 Tax=Deltaproteobacteri...	[more]
A0A7W0QDX8_9DELT	2.230e-8	46.67	Uncharacterized protein n=1 Tax=Deltaproteobacteri...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig121426	contig	M-pyrifera_M_contig121426:1..204 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	204
Cds size	180
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815733.4497666-UTR-M-pyrifera_M_contig121426:0..24	1622815733.4497666-UTR-M-pyrifera_M_contig121426:0..24	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig121426 1..24 +
1692277543.889498-UTR-M-pyrifera_M_contig121426:0..24	1692277543.889498-UTR-M-pyrifera_M_contig121426:0..24	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig121426 1..24 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815733.4620292-CDS-M-pyrifera_M_contig121426:24..204	1622815733.4620292-CDS-M-pyrifera_M_contig121426:24..204	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig121426 25..204 +
1692277543.8975844-CDS-M-pyrifera_M_contig121426:24..204	1692277543.8975844-CDS-M-pyrifera_M_contig121426:24..204	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig121426 25..204 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig121426.4407.1	prot_M-pyrifera_M_contig121426.4407.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig121426 25..204 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig121426:1..204+
coding sequence from alignment at M-pyrifera_M_contig121426:1..204+

protein sequence of mRNA_M-pyrifera_M_contig121426.4407.1

>prot_M-pyrifera_M_contig121426.4407.1 ID=prot_M-pyrifera_M_contig121426.4407.1|Name=mRNA_M-pyrifera_M_contig121426.4407.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=60bp
MCPLSEIPPEHINHRAAFLLTRLSQAMTLDELLDVSGMPKLEALRHLCGL
HVLHYLEVV*

mRNA from alignment at M-pyrifera_M_contig121426:1..204+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig121426.4407.1 ID=mRNA_M-pyrifera_M_contig121426.4407.1|Name=mRNA_M-pyrifera_M_contig121426.4407.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig121426:1..204+ (Macrocystis pyrifera P11B4 male)
GACGCGGGGCAAGTGCCCCGCCTTATGTGTCCGTTGTCGGAAATTCCTCC
CGAACACATCAACCATCGTGCAGCGTTCTTGCTAACCAGGCTTTCGCAGG
CGATGACCCTTGACGAATTGCTGGATGTCTCGGGAATGCCAAAGCTCGAG
GCGTTGCGCCATTTGTGCGGGCTACACGTTCTGCACTACTTAGAAGTTGT
CTGA

Coding sequence (CDS) from alignment at M-pyrifera_M_contig121426:1..204+

>mRNA_M-pyrifera_M_contig121426.4407.1 ID=mRNA_M-pyrifera_M_contig121426.4407.1|Name=mRNA_M-pyrifera_M_contig121426.4407.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig121426:1..204+ (Macrocystis pyrifera P11B4 male)
ATGTGTCCGTTGTCGGAAATTCCTCCCGAACACATCAACCATCGTGCAGC
GTTCTTGCTAACCAGGCTTTCGCAGGCGATGACCCTTGACGAATTGCTGG
ATGTCTCGGGAATGCCAAAGCTCGAGGCGTTGCGCCATTTGTGCGGGCTA
CACGTTCTGCACTACTTAGAAGTTGTCTGAATGTGTCCGTTGTCGGAAAT
TCCTCCCGAACACATCAACCATCGTGCAGCGTTCTTGCTAACCAGGCTTT
CGCAGGCGATGACCCTTGACGAATTGCTGGATGTCTCGGGAATGCCAAAG
CTCGAGGCGTTGCGCCATTTGTGCGGGCTACACGTTCTGCACTACTTAGA
AGTTGTCTGA