mRNA_M-pyrifera_M_contig121413.4404.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121413.4404.1
Unique NamemRNA_M-pyrifera_M_contig121413.4404.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121413.4404.1 vs. uniprot
Match: A0A0L0FH13_9EUKA (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FH13_9EUKA)

HSP 1 Score: 70.5 bits (171), Expect = 1.070e-12
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:   10 AFRVQAENVEVLKRPSEFYEGILEGIRGAERRVVLCALYLGTGAPEKDLTTALEQRHSTVANLRSLVLLDASRGTRG 240
            AF + A ++E+L  PS F + + +GI GAE+RVV+ +LYLGTGA EK +  ALE   S  A++   VLLD  RG+RG
Sbjct:  112 AFPIAASDIEILHEPSVFAQRLTDGIAGAEKRVVVASLYLGTGAQEKAIVQALETASSNGASVE--VLLDGLRGSRG 186
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BLAST of mRNA_M-pyrifera_M_contig121413.4404.1 vs. uniprot
Match: A0A7R9YDI5_9STRA (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDI5_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.710e-11
Identity = 32/79 (40.51%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:    1 LLTAFRVQAENVEVLKRPSEFYEGILEGIRGAERRVVLCALYLGTGAPEKDLTTALEQRHSTVANLRSLVLLDASRGTR 237
            L  AF  + E +  L  P E+Y+ +L GIR +++R+V+CALYLG+G   K     +E+R     +L+   L DA+RGTR
Sbjct:   48 LAPAFPFRGEQIRPLAGPHEYYDAVLAGIRRSKKRIVMCALYLGSGERAKACLREIEERLEAEEDLQVSFLFDAARGTR 126
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BLAST of mRNA_M-pyrifera_M_contig121413.4404.1 vs. uniprot
Match: A0A5D6YDJ9_9STRA (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDJ9_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.700e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:   13 FRVQAENVEVLKRPSEFYEGILEGIRGAERRVVLCALYLGTGAPEKDLTTALEQRHSTVANLRSLVLLDASRGTRG 240
            F + +E V +L  P++FY  +L  +RGAERR+ L +LYLGTGA E+ L  A+  R      LR  V+LD SRG RG
Sbjct:   25 FPLFSERVSLLASPADFYAQLLANVRGAERRITLSSLYLGTGALERALVAAIAHRLRERPALRVRVVLDFSRGQRG 100
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BLAST of mRNA_M-pyrifera_M_contig121413.4404.1 vs. uniprot
Match: A0A2R2MP74_LINUN (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A2R2MP74_LINUN)

HSP 1 Score: 65.1 bits (157), Expect = 1.770e-10
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 1 
Query:   13 FRVQAENVEVLKRPSEFYEGILEGIRGAERRVVLCALYLGTGAPEKDLTTALEQ--RHSTVANLRSLVLLDASRGTRG 240
            F V   NV +L  P+E++E +    R AE+R+V+ ALYLGTGA EK+L   L    R  +   L+  VLLD +RGTRG
Sbjct:   32 FGVCGRNVRILDTPTEYFEALKANARKAEKRIVISALYLGTGALEKELIDCLHNVSRQKSSQGLKVHVLLDYTRGTRG 109
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BLAST of mRNA_M-pyrifera_M_contig121413.4404.1 vs. uniprot
Match: A0A0T6AXA7_9SCAR (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (Fragment) n=1 Tax=Oryctes borbonicus TaxID=1629725 RepID=A0A0T6AXA7_9SCAR)

HSP 1 Score: 62.8 bits (151), Expect = 1.140e-9
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:   13 FRVQAENVEVLKRPSEFYEGILEGIRGAERRVVLCALYLGTGAPEKDLTTA-LEQRHSTVANLRSLVLLDASRGTR 237
            F ++A+NV +L  P EFYE + E    A++R+ L +LYLGTGA E +L TA L   +    +L+  +LLD +RG+R
Sbjct:   45 FPIKAKNVSILHEPQEFYEALYEKCLTAQKRITLVSLYLGTGAMESNLVTAMLNNTYFINGSLKINILLDYTRGSR 120
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BLAST of mRNA_M-pyrifera_M_contig121413.4404.1 vs. uniprot
Match: H2YAE0_CIOSA (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2YAE0_CIOSA)

HSP 1 Score: 62.0 bits (149), Expect = 2.140e-9
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:    1 LLTAFRVQAENVEVLKRPSEFYEGILEGIRGAERRVVLCALYLGTGAPEKDLTTALEQR-HSTVANLRSLVLLDASRGTRG 240
            L   F V  +NV+V++ P EFY  +L G++ A  R+VL ALYLGT   ++ L   L ++     + L   VLLD +RG+RG
Sbjct:    7 LAPCFAVNGDNVKVIESPKEFYSALLNGVKSANHRIVLSALYLGTDDLDRQLVDCLNEKIKQKGSKLDVNVLLDFTRGSRG 87
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BLAST of mRNA_M-pyrifera_M_contig121413.4404.1 vs. uniprot
Match: H2YAD9_CIOSA (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2YAD9_CIOSA)

HSP 1 Score: 62.0 bits (149), Expect = 2.150e-9
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:    1 LLTAFRVQAENVEVLKRPSEFYEGILEGIRGAERRVVLCALYLGTGAPEKDLTTALEQR-HSTVANLRSLVLLDASRGTRG 240
            L   F V  +NV+V++ P EFY  +L G++ A  R+VL ALYLGT   ++ L   L ++     + L   VLLD +RG+RG
Sbjct:   39 LAPCFAVNGDNVKVIESPKEFYSALLNGVKSANHRIVLSALYLGTDDLDRQLVDCLNEKIKQKGSKLDVNVLLDFTRGSRG 119
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BLAST of mRNA_M-pyrifera_M_contig121413.4404.1 vs. uniprot
Match: A0A8B7XYZ7_ACAPL (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XYZ7_ACAPL)

HSP 1 Score: 61.2 bits (147), Expect = 4.070e-9
Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 1 
Query:   13 FRVQAENVEVLKRPSEFYEGILEGIRGAERRVVLCALYLGTGAPEKDLTTALEQ--RHSTVAN----LRSLVLLDASRGTRG 240
            F V    + VLK P E++E + E +    RRVVL ALYLGTG  E++L  +L +  R S +AN    L   +LLD +RG+RG
Sbjct:   91 FWVSGNQITVLKGPQEYFETLKERMETCRRRVVLAALYLGTGTQEEELVVSLYEACRRSRLANSSTPLEVQILLDCTRGSRG 172
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BLAST of mRNA_M-pyrifera_M_contig121413.4404.1 vs. uniprot
Match: A0A0R3RSW5_9BILA (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Elaeophora elaphi TaxID=1147741 RepID=A0A0R3RSW5_9BILA)

HSP 1 Score: 60.8 bits (146), Expect = 5.450e-9
Identity = 29/74 (39.19%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:   19 VQAENVEVLKRPSEFYEGILEGIRGAERRVVLCALYLGTGAPEKDLTTALEQRHSTVANLRSLVLLDASRGTRG 240
            V  E +++++ P+EFY  +L  I  A+ R+V+ ALYLG+G+ EK L   LE+  +   N++ ++L+D  RG RG
Sbjct:   27 VDPEKIKIIEGPAEFYNKLLSLIHEAKERIVISALYLGSGSYEKALVDELEKAMNMNPNIKVIILVDCLRGMRG 100
[Close]
BLAST of mRNA_M-pyrifera_M_contig121413.4404.1 vs. uniprot
Match: UPI0018D646CE (LOW QUALITY PROTEIN: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D646CE)

HSP 1 Score: 60.8 bits (146), Expect = 5.560e-9
Identity = 35/82 (42.68%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:   13 FRVQAENVEVLKRPSEFYEGILEGIRGAERRVVLCALYLGTGAPEKDLTTALEQ--RHSTVAN----LRSLVLLDASRGTRG 240
            F V  + + +LK P+E++E + E +   +RRVVL ALYLGTG  E +L  +L +  R S +AN    L   +LLD +RG+RG
Sbjct:   84 FSVCGDRITILKGPAEYFETLKERMETCKRRVVLAALYLGTGPQEDELVASLYEACRRSRLANPSXPLEVQILLDCTRGSRG 165
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121413.4404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0L0FH13_9EUKA1.070e-1249.35CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
A0A7R9YDI5_9STRA2.710e-1140.51CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
A0A5D6YDJ9_9STRA3.700e-1147.37CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
A0A2R2MP74_LINUN1.770e-1046.15CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
A0A0T6AXA7_9SCAR1.140e-943.42CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
H2YAE0_CIOSA2.140e-940.74CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
H2YAD9_CIOSA2.150e-940.74CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
A0A8B7XYZ7_ACAPL4.070e-943.90CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
A0A0R3RSW5_9BILA5.450e-939.19CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
UPI0018D646CE5.560e-942.68LOW QUALITY PROTEIN: CDP-diacylglycerol--glycerol-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121413contigM-pyrifera_M_contig121413:292..531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score75.1
Seed ortholog evalue1.7e-11
Seed eggNOG ortholog192875.XP_004347567.1
Preferred namePGS1
KEGG rclassRC00002,RC00017,RC02795
KEGG koko:K00995,ko:K19948
KEGG ReactionR01801
KEGG Pathwayko00564,ko01100,map00564,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005783,GO:0006139,GO:0006220,GO:0006221,GO:0006629,GO:0006638,GO:0006639,GO:0006644,GO:0006650,GO:0006655,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0007006,GO:0008150,GO:0008152,GO:0008444,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009165,GO:0009987,GO:0012505,GO:0016020,GO:0016024,GO:0016043,GO:0016740,GO:0016772,GO:0016780,GO:0017169,GO:0018130,GO:0019438,GO:0019637,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032048,GO:0032049,GO:0034641,GO:0034654,GO:0042127,GO:0042391,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046339,GO:0046341,GO:0046471,GO:0046474,GO:0046483,GO:0046486,GO:0046872,GO:0050789,GO:0050794,GO:0051881,GO:0055086,GO:0061024,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0072527,GO:0072528,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity
EggNOG OGs38DGE@33154,COG1502@1,KOG3964@2759
EC2.7.8.5
COG Functional cat.I
BiGG ReactioniMM904.YCL004W,iND750.YCL004W
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Exons1
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815733.279624-CDS-M-pyrifera_M_contig121413:291..5311622815733.279624-CDS-M-pyrifera_M_contig121413:291..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121413 292..531 +
1692277543.819107-CDS-M-pyrifera_M_contig121413:291..5311692277543.819107-CDS-M-pyrifera_M_contig121413:291..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121413 292..531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121413.4404.1prot_M-pyrifera_M_contig121413.4404.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121413 292..531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121413.4404.1

>prot_M-pyrifera_M_contig121413.4404.1 ID=prot_M-pyrifera_M_contig121413.4404.1|Name=mRNA_M-pyrifera_M_contig121413.4404.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
LLTAFRVQAENVEVLKRPSEFYEGILEGIRGAERRVVLCALYLGTGAPEK
DLTTALEQRHSTVANLRSLVLLDASRGTRG
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mRNA from alignment at M-pyrifera_M_contig121413:292..531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121413.4404.1 ID=mRNA_M-pyrifera_M_contig121413.4404.1|Name=mRNA_M-pyrifera_M_contig121413.4404.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig121413:292..531+ (Macrocystis pyrifera P11B4 male)
CTGCTGACGGCCTTTCGAGTGCAGGCAGAGAACGTGGAAGTGCTGAAGAG
GCCCTCTGAGTTCTACGAGGGCATATTGGAGGGCATTAGAGGCGCGGAGC
GGCGCGTGGTCCTCTGTGCGCTCTACCTCGGCACTGGCGCTCCCGAGAAG
GACCTCACCACTGCACTGGAGCAGAGGCACTCCACTGTAGCCAATCTGAG
ATCCCTTGTGCTCCTCGACGCCAGCAGAGGCACCCGAGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121413:292..531+

>mRNA_M-pyrifera_M_contig121413.4404.1 ID=mRNA_M-pyrifera_M_contig121413.4404.1|Name=mRNA_M-pyrifera_M_contig121413.4404.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig121413:292..531+ (Macrocystis pyrifera P11B4 male)
CTGCTGACGGCCTTTCGAGTGCAGGCAGAGAACGTGGAAGTGCTGAAGAG
GCCCTCTGAGTTCTACGAGGGCATATTGGAGGGCATTAGAGGCGCGGAGC
GGCGCGTGGTCCTCTGTGCGCTCTACCTCGGCACTGGCGCTCCCGAGAAG
GACCTCACCACTGCACTGGAGCAGAGGCACTCCACTGTAGCCAATCTGAG
ATCCCTTGTGCTCCTCGACGCCAGCAGAGGCACCCGAGGACTGCTGACGG
CCTTTCGAGTGCAGGCAGAGAACGTGGAAGTGCTGAAGAGGCCCTCTGAG
TTCTACGAGGGCATATTGGAGGGCATTAGAGGCGCGGAGCGGCGCGTGGT
CCTCTGTGCGCTCTACCTCGGCACTGGCGCTCCCGAGAAGGACCTCACCA
CTGCACTGGAGCAGAGGCACTCCACTGTAGCCAATCTGAGATCCCTTGTG
CTCCTCGACGCCAGCAGAGGCACCCGAGGA
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