mRNA_M-pyrifera_M_contig100207.44.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig100207.44.1
Unique Name	mRNA_M-pyrifera_M_contig100207.44.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig100207.44.1 vs. uniprot
Match: A0A5A8DRZ2_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DRZ2_CAFRO)

HSP 1 Score: 100 bits (249), Expect = 1.690e-22
Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 1

Query:   13 GAEVFVYSSQRLSSVEWHREAQRRELRRHKGSTFTHSKTIGAATVSMLNEEEDRRAARARDVEQRTVARGFVYPAPKSPREFRRHPGRPNPQRIADLRHPWAD 321
            G  VF YS QR+S+++WHR  QR  L   KG+ F+HS   G ATVS+ ++  +  AAR    E+ TV +GFVYPAP++P E+ +HP  P+P R  DLR P+ D
Sbjct:  291 GGRVFAYSGQRMSTLDWHRSLQRDRLVADKGAVFSHSLAFGQATVSLADDAGEGEAARRAHREKLTVPQGFVYPAPRAPAEYAKHPWAPHPARAEDLRAPFLD 393

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BLAST of mRNA_M-pyrifera_M_contig100207.44.1 vs. uniprot
Match: A0A5A8CQS5_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CQS5_CAFRO)

HSP 1 Score: 100 bits (249), Expect = 1.890e-22
Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 1

Query:   13 GAEVFVYSSQRLSSVEWHREAQRRELRRHKGSTFTHSKTIGAATVSMLNEEEDRRAARARDVEQRTVARGFVYPAPKSPREFRRHPGRPNPQRIADLRHPWAD 321
            G  VF YS QR+S+++WHR  QR  L   KG+ F+HS   G ATVS+ ++  +  AAR    E+ TV +GFVYPAP++P E+ +HP  P+P R  DLR P+ D
Sbjct:  575 GGRVFAYSGQRMSTLDWHRSLQRDRLVADKGAVFSHSLAFGQATVSLADDAGEGEAARRAHREKLTVPQGFVYPAPRAPAEYAKHPWAPHPARAEDLRAPFLD 677

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BLAST of mRNA_M-pyrifera_M_contig100207.44.1 vs. uniprot
Match: A0A812KZ98_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812KZ98_9DINO)

HSP 1 Score: 100 bits (249), Expect = 1.950e-22
Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 1

Query:   13 GAEVFVYSSQRLSSVEWHREAQRRELRRHKGSTFTHSKTIGAATVSMLNEEEDRRAARARDVEQRTVARGFVYPAPKSPREFRRHPGRPNPQRIADLRHPWAD 321
            G  VF YS QR+S+++WHR  QR  L   KG+ F+HS   G ATVS+ ++  +  AAR    E+ TV +GFVYPAP++P E+ +HP  P+P R  DLR P+ D
Sbjct: 1395 GGRVFAYSGQRMSTLDWHRSLQRDRLVADKGAVFSHSLAFGQATVSLADDAGEGEAARRAHREKLTVPQGFVYPAPRAPAEYAKHPWAPHPARAEDLRAPFLD 1497

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BLAST of mRNA_M-pyrifera_M_contig100207.44.1 vs. uniprot
Match: W2Q5K6_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2Q5K6_PHYPN)

HSP 1 Score: 74.3 bits (181), Expect = 2.980e-13
Identity = 34/100 (34.00%), Postives = 63/100 (63.00%), Query Frame = 1

Query:   22 VFVYSSQRLSSVEWHREAQRRELRRHKGSTFTHSKTIGAATVSMLNEEEDRRAARARDVEQRTVARGFVYPAPKSPREFRRHPGRPNPQRIADLRHPWAD 321
            V++YS Q+L + +  ++  R +L +++ +T+T+S+   +  +SM+N E  R+     + ++ T  RGF+YPAP+ P E+++HP  P+  R  DLR P+ D
Sbjct: 1388 VYLYSGQKLRTQDILQDKLREQLSKNRHATYTYSRDFQSLALSMVNPEALRQTEEQENRKKWTTQRGFIYPAPRQPSEYKKHPNAPSEARCEDLRQPFVD 1487

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BLAST of mRNA_M-pyrifera_M_contig100207.44.1 vs. uniprot
Match: A0A329SI59_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SI59_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 7.460e-13
Identity = 35/100 (35.00%), Postives = 61/100 (61.00%), Query Frame = 1

Query:   22 VFVYSSQRLSSVEWHREAQRRELRRHKGSTFTHSKTIGAATVSMLNEEEDRRAARARDVEQRTVARGFVYPAPKSPREFRRHPGRPNPQRIADLRHPWAD 321
            V++YS Q+L + +  ++  R  L + + +T+T+S+   +  +SM+N E  R+     + ++ T  RGFVYPAP+ P E+++HP  P+  R  DLR P+ D
Sbjct:  848 VYLYSGQKLRTQDVLQDKLRERLSKDRHATYTYSRDFQSLALSMVNPEALRQTEEQENRKKWTTQRGFVYPAPRQPSEYKKHPNAPSEARCEDLRQPFVD 947

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BLAST of mRNA_M-pyrifera_M_contig100207.44.1 vs. uniprot
Match: A0A7S1U4M0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4M0_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.450e-12
Identity = 37/100 (37.00%), Postives = 58/100 (58.00%), Query Frame = 1

Query:   22 VFVYSSQRLSSVEWHREAQRRELRRHKGSTFTHSKTIGAATVSMLNEEEDRRAARARDVEQRTVARGFVYPAPKSPREFRRHPGRPNPQRIADLRHPWAD 321
            VF YS Q+ + VE  +   R ++R+ + +TFT+S    + +V + +  E +  +R  D  +    RGFVYPAP+ PRE+  HP RP+  RI  L+ PW +
Sbjct:  450 VFTYSVQKYNHVEIQKRVLREKIRKIRNATFTYSMDYQSQSVVLADNSELKPFSRDVDPNKWKTERGFVYPAPREPREYNIHPHRPSNARIDVLKEPWVE 549

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BLAST of mRNA_M-pyrifera_M_contig100207.44.1 vs. uniprot
Match: A0A8J5IL33_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IL33_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.170e-11
Identity = 34/100 (34.00%), Postives = 59/100 (59.00%), Query Frame = 1

Query:   22 VFVYSSQRLSSVEWHREAQRRELRRHKGSTFTHSKTIGAATVSMLNEEEDRRAARARDVEQRTVARGFVYPAPKSPREFRRHPGRPNPQRIADLRHPWAD 321
            V++YS Q+L + +  ++  R  L + +  T+T+S+   +  +SM+N E  R+     + ++ T  RGFVYPAP+ P E+++HP  P+     DLR P+ D
Sbjct:  272 VYLYSGQKLRTQDVLQDKLRERLSKDRHVTYTYSRDFQSLALSMVNPEALRQTEEQENRKKWTTQRGFVYPAPRQPSEYKKHPNAPSEASCEDLRQPFVD 371

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BLAST of mRNA_M-pyrifera_M_contig100207.44.1 vs. uniprot
Match: A0A833T8R7_PHYIN (Uncharacterized protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833T8R7_PHYIN)

HSP 1 Score: 69.7 bits (169), Expect = 1.210e-11
Identity = 34/100 (34.00%), Postives = 59/100 (59.00%), Query Frame = 1

Query:   22 VFVYSSQRLSSVEWHREAQRRELRRHKGSTFTHSKTIGAATVSMLNEEEDRRAARARDVEQRTVARGFVYPAPKSPREFRRHPGRPNPQRIADLRHPWAD 321
            V++YS Q+L + +  ++  R  L +   +T+T+S    +  +SM+N E  R++      ++ T  RGF+YPAP+ P E+++HP  P+  R  DLR P+ D
Sbjct:  536 VYLYSGQKLRTQDTLQDKLRERLSKDHHTTYTYSHDFQSLALSMVNLEALRQSEEQETRKKWTTQRGFIYPAPRQPSEYKKHPNTPSEARCEDLRQPFVD 635

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BLAST of mRNA_M-pyrifera_M_contig100207.44.1 vs. uniprot
Match: T0RJV8_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0RJV8_SAPDV)

HSP 1 Score: 69.3 bits (168), Expect = 1.670e-11
Identity = 35/102 (34.31%), Postives = 57/102 (55.88%), Query Frame = 1

Query:   16 AEVFVYSSQRLSSVEWHREAQRRELRRHKGSTFTHSKTIGAATVSMLNEEEDRRAARARDVEQRTVARGFVYPAPKSPREFRRHPGRPNPQRIADLRHPWAD 321
            A V++YS Q+L S +  ++A R  L + + +TFT S+   + T S+++E +  + A +      T   GFVYP P+ P EF +HP  P+  R  +L  PW +
Sbjct:  771 APVYIYSGQKLRSKDLEKDAMRARLAKDRHATFTDSEEFNSLTWSLVDENKLAQIAESASKALYTTPSGFVYPPPRQPSEFYKHPKAPSAARCEELSAPWIE 872

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BLAST of mRNA_M-pyrifera_M_contig100207.44.1 vs. uniprot
Match: A0A1V9ZM52_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZM52_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 7.910e-11
Identity = 36/102 (35.29%), Postives = 56/102 (54.90%), Query Frame = 1

Query:   16 AEVFVYSSQRLSSVEWHREAQRRELRRHKGSTFTHSKTIGAATVSMLNEEEDRRAARARDVEQRTVARGFVYPAPKSPREFRRHPGRPNPQRIADLRHPWAD 321
            A V++YS Q+L + +  ++A R+ L + + +TFT S+   + T S ++E +    A A      T   GFVYP P+ P EF +HP  P+  R  DL  PW +
Sbjct:  770 APVYIYSGQKLRTKDIAKDAMRQRLAKDRNATFTDSEEFNSLTWSPVDETKLAVLADAASKALYTTPTGFVYPPPRQPSEFYKHPKAPSAARCEDLASPWIE 871

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig100207.44.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig100207.44.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11


Match Name	E-value	Identity	Description
A0A5A8DRZ2_CAFRO	1.690e-22	47.57	Uncharacterized protein n=2 Tax=Cafeteria roenberg...	[more]
A0A5A8CQS5_CAFRO	1.890e-22	47.57	Uncharacterized protein n=1 Tax=Cafeteria roenberg...	[more]
A0A812KZ98_9DINO	1.950e-22	47.57	Hypothetical protein (Fragment) n=1 Tax=Symbiodini...	[more]
W2Q5K6_PHYPN	2.980e-13	34.00	Uncharacterized protein n=9 Tax=Phytophthora TaxID...	[more]
A0A329SI59_9STRA	7.460e-13	35.00	Uncharacterized protein n=1 Tax=Phytophthora cacto...	[more]
A0A7S1U4M0_9STRA	3.450e-12	37.00	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
A0A8J5IL33_9STRA	1.170e-11	34.00	Uncharacterized protein n=1 Tax=Phytophthora aleat...	[more]
A0A833T8R7_PHYIN	1.210e-11	34.00	Uncharacterized protein n=1 Tax=Phytophthora infes...	[more]
T0RJV8_SAPDV	1.670e-11	34.31	Uncharacterized protein n=2 Tax=Saprolegnia TaxID=...	[more]
A0A1V9ZM52_9STRA	7.910e-11	35.29	Uncharacterized protein n=1 Tax=Achlya hypogyna Ta...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig100207	contig	M-pyrifera_M_contig100207:278..598 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	76.3
Seed ortholog evalue	1e-11
Seed eggNOG ortholog	157072.XP_008862276.1
Hectar predicted targeting category	other localisation
EggNOG free text desc.	Uncharacterized protein FLJ43738-like
EggNOG OGs	28MGN@1,2QU03@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	321
Cds size	321
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815497.2661278-CDS-M-pyrifera_M_contig100207:277..598	1622815497.2661278-CDS-M-pyrifera_M_contig100207:277..598	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig100207 278..598 +
1692277438.450498-CDS-M-pyrifera_M_contig100207:277..598	1692277438.450498-CDS-M-pyrifera_M_contig100207:277..598	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig100207 278..598 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig100207.44.1	prot_M-pyrifera_M_contig100207.44.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig100207 278..598 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig100207:278..598+
coding sequence from alignment at M-pyrifera_M_contig100207:278..598+

protein sequence of mRNA_M-pyrifera_M_contig100207.44.1

>prot_M-pyrifera_M_contig100207.44.1 ID=prot_M-pyrifera_M_contig100207.44.1|Name=mRNA_M-pyrifera_M_contig100207.44.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
GDGGGAEVFVYSSQRLSSVEWHREAQRRELRRHKGSTFTHSKTIGAATVS
MLNEEEDRRAARARDVEQRTVARGFVYPAPKSPREFRRHPGRPNPQRIAD
LRHPWAD

mRNA from alignment at M-pyrifera_M_contig100207:278..598+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig100207.44.1 ID=mRNA_M-pyrifera_M_contig100207.44.1|Name=mRNA_M-pyrifera_M_contig100207.44.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig100207:278..598+ (Macrocystis pyrifera P11B4 male)
GGTGATGGTGGAGGTGCGGAAGTTTTCGTGTACTCTTCGCAACGGCTCTC
TAGCGTGGAGTGGCACCGAGAGGCGCAGCGTCGCGAGTTGCGTCGTCACA
AGGGGTCGACGTTTACACATAGCAAGACGATAGGAGCAGCAACGGTATCG
ATGTTGAATGAGGAGGAGGATCGAAGGGCGGCTCGTGCGAGGGACGTGGA
GCAGCGAACGGTGGCGCGCGGCTTTGTCTATCCTGCTCCAAAATCGCCTC
GAGAATTTCGCCGCCACCCAGGTCGACCGAATCCACAGCGCATCGCAGAT
TTGCGTCATCCTTGGGCGGAT

Coding sequence (CDS) from alignment at M-pyrifera_M_contig100207:278..598+

>mRNA_M-pyrifera_M_contig100207.44.1 ID=mRNA_M-pyrifera_M_contig100207.44.1|Name=mRNA_M-pyrifera_M_contig100207.44.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig100207:278..598+ (Macrocystis pyrifera P11B4 male)
GGTGATGGTGGAGGTGCGGAAGTTTTCGTGTACTCTTCGCAACGGCTCTC
TAGCGTGGAGTGGCACCGAGAGGCGCAGCGTCGCGAGTTGCGTCGTCACA
AGGGGTCGACGTTTACACATAGCAAGACGATAGGAGCAGCAACGGTATCG
ATGTTGAATGAGGAGGAGGATCGAAGGGCGGCTCGTGCGAGGGACGTGGA
GCAGCGAACGGTGGCGCGCGGCTTTGTCTATCCTGCTCCAAAATCGCCTC
GAGAATTTCGCCGCCACCCAGGTCGACCGAATCCACAGCGCATCGCAGAT
TTGCGTCATCCTTGGGCGGATGGTGATGGTGGAGGTGCGGAAGTTTTCGT
GTACTCTTCGCAACGGCTCTCTAGCGTGGAGTGGCACCGAGAGGCGCAGC
GTCGCGAGTTGCGTCGTCACAAGGGGTCGACGTTTACACATAGCAAGACG
ATAGGAGCAGCAACGGTATCGATGTTGAATGAGGAGGAGGATCGAAGGGC
GGCTCGTGCGAGGGACGTGGAGCAGCGAACGGTGGCGCGCGGCTTTGTCT
ATCCTGCTCCAAAATCGCCTCGAGAATTTCGCCGCCACCCAGGTCGACCG
AATCCACAGCGCATCGCAGATTTGCGTCATCCTTGGGCGGAT