prot_M-pyrifera_M_contig121209.4370.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig121209.4370.1
Unique Nameprot_M-pyrifera_M_contig121209.4370.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length118
Homology
BLAST of mRNA_M-pyrifera_M_contig121209.4370.1 vs. uniprot
Match: A0A1Y1WCR2_9FUNG (General transcription and DNA repair factor IIH subunit TFB4 n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WCR2_9FUNG)

HSP 1 Score: 51.6 bits (122), Expect = 3.240e-5
Identity = 34/107 (31.78%), Postives = 60/107 (56.07%), Query Frame = 0
Query:   18 LTLSKALEQLLVWINAYLMLRKQNKITVIACDAQKSEFLFSTEHHQQSD-------SESRRSDGPVALLTAKLRQVMERSTNAPSSATRRGSQLSSALSLALCHINQ 117
            L   +AL+Q+++++NAYL L+ +NK+ VIA +  +  +L+ TE   ++         + R  D  V     K+ +    S++ P+   +  SQ+S ALS ALC+IN+
Sbjct:   28 LQFDRALQQVVIFLNAYLALKPENKLAVIATNKSECRYLYPTEFTDETTIPEMQVYEQFRDVDTKVLTGVQKMIESGSMSSDTPAGIEQGQSQVSRALSKALCYINR 134          
BLAST of mRNA_M-pyrifera_M_contig121209.4370.1 vs. uniprot
Match: A0A1L9RQH7_ASPWE (General transcription and DNA repair factor IIH subunit TFB4 n=1 Tax=Aspergillus wentii DTO 134E9 TaxID=1073089 RepID=A0A1L9RQH7_ASPWE)

HSP 1 Score: 51.2 bits (121), Expect = 4.780e-5
Identity = 43/125 (34.40%), Postives = 62/125 (49.60%), Query Frame = 0
Query:   15 EGLLTLSKALEQLLVWINAYLMLRKQNKITVIACDAQKSEFLFSTEHHQQSDSESRRSDGPVAL----------------------LTAKLRQVMERSTNAPSSATRRGSQLSSALSLALCHINQ 117
            E  L LSKA+  +LV+INA+L     N++ V+A  +QK+ +L+  E H  S S S   DG VA+                      +T  LR +ME ST A        + ++ AL+LAL HIN+
Sbjct:   37 EDSLPLSKAIANILVFINAHLACNYANEVAVVASHSQKATWLYPCEQHPGSKS-STDQDGDVAMNGPDHSPAQVNKYRPFRIVEEQVTRNLRHLME-STAASDIQATTSTMMAGALTLALSHINR 159          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121209.4370.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1Y1WCR2_9FUNG3.240e-531.78General transcription and DNA repair factor IIH su... [more]
A0A1L9RQH7_ASPWE4.780e-534.40General transcription and DNA repair factor IIH su... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410coord: 1..118
e-value: 1.2E-19
score: 72.8
IPR004600TFIIH subunit Tfb4/GTF2H3PFAMPF03850Tfb4coord: 12..118
e-value: 3.5E-17
score: 62.8
IPR004600TFIIH subunit Tfb4/GTF2H3PANTHERPTHR12831TRANSCRIPTION INITIATION FACTOR IIH TFIIH , POLYPEPTIDE 3-RELATEDcoord: 2..118

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121209contigM-pyrifera_M_contig121209:1..354 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121209.4370.1mRNA_M-pyrifera_M_contig121209.4370.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig121209 1..354 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig121209.4370.1 ID=prot_M-pyrifera_M_contig121209.4370.1|Name=mRNA_M-pyrifera_M_contig121209.4370.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
VNVNFWTGRVGREEEGLLTLSKALEQLLVWINAYLMLRKQNKITVIACDA
QKSEFLFSTEHHQQSDSESRRSDGPVALLTAKLRQVMERSTNAPSSATRR
GSQLSSALSLALCHINQV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036465vWFA_dom_sf
IPR004600TFIIH_Tfb4/GTF2H3