mRNA_M-pyrifera_M_contig121209.4370.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121209.4370.1
Unique NamemRNA_M-pyrifera_M_contig121209.4370.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121209.4370.1 vs. uniprot
Match: A0A1Y1WCR2_9FUNG (General transcription and DNA repair factor IIH subunit TFB4 n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WCR2_9FUNG)

HSP 1 Score: 51.6 bits (122), Expect = 3.240e-5
Identity = 34/107 (31.78%), Postives = 60/107 (56.07%), Query Frame = 1 
Query:   52 LTLSKALEQLLVWINAYLMLRKQNKITVIACDAQKSEFLFSTEHHQQSD-------SESRRSDGPVALLTAKLRQVMERSTNAPSSATRRGSQLSSALSLALCHINQ 351
            L   +AL+Q+++++NAYL L+ +NK+ VIA +  +  +L+ TE   ++         + R  D  V     K+ +    S++ P+   +  SQ+S ALS ALC+IN+
Sbjct:   28 LQFDRALQQVVIFLNAYLALKPENKLAVIATNKSECRYLYPTEFTDETTIPEMQVYEQFRDVDTKVLTGVQKMIESGSMSSDTPAGIEQGQSQVSRALSKALCYINR 134
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BLAST of mRNA_M-pyrifera_M_contig121209.4370.1 vs. uniprot
Match: A0A1L9RQH7_ASPWE (General transcription and DNA repair factor IIH subunit TFB4 n=1 Tax=Aspergillus wentii DTO 134E9 TaxID=1073089 RepID=A0A1L9RQH7_ASPWE)

HSP 1 Score: 51.2 bits (121), Expect = 4.780e-5
Identity = 43/125 (34.40%), Postives = 62/125 (49.60%), Query Frame = 1 
Query:   43 EGLLTLSKALEQLLVWINAYLMLRKQNKITVIACDAQKSEFLFSTEHHQQSDSESRRSDGPVAL----------------------LTAKLRQVMERSTNAPSSATRRGSQLSSALSLALCHINQ 351
            E  L LSKA+  +LV+INA+L     N++ V+A  +QK+ +L+  E H  S S S   DG VA+                      +T  LR +ME ST A        + ++ AL+LAL HIN+
Sbjct:   37 EDSLPLSKAIANILVFINAHLACNYANEVAVVASHSQKATWLYPCEQHPGSKS-STDQDGDVAMNGPDHSPAQVNKYRPFRIVEEQVTRNLRHLME-STAASDIQATTSTMMAGALTLALSHINR 159
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121209.4370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1Y1WCR2_9FUNG3.240e-531.78General transcription and DNA repair factor IIH su... [more]
A0A1L9RQH7_ASPWE4.780e-534.40General transcription and DNA repair factor IIH su... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121209contigM-pyrifera_M_contig121209:1..354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.7244608-CDS-M-pyrifera_M_contig121209:0..3541622815731.7244608-CDS-M-pyrifera_M_contig121209:0..354Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121209 1..354 +
1692277543.0903032-CDS-M-pyrifera_M_contig121209:0..3541692277543.0903032-CDS-M-pyrifera_M_contig121209:0..354Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121209 1..354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121209.4370.1prot_M-pyrifera_M_contig121209.4370.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121209 1..354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121209.4370.1

>prot_M-pyrifera_M_contig121209.4370.1 ID=prot_M-pyrifera_M_contig121209.4370.1|Name=mRNA_M-pyrifera_M_contig121209.4370.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
VNVNFWTGRVGREEEGLLTLSKALEQLLVWINAYLMLRKQNKITVIACDA
QKSEFLFSTEHHQQSDSESRRSDGPVALLTAKLRQVMERSTNAPSSATRR
GSQLSSALSLALCHINQV
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mRNA from alignment at M-pyrifera_M_contig121209:1..354+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121209.4370.1 ID=mRNA_M-pyrifera_M_contig121209.4370.1|Name=mRNA_M-pyrifera_M_contig121209.4370.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig121209:1..354+ (Macrocystis pyrifera P11B4 male)
GTGAACGTCAACTTCTGGACTGGAAGGGTGGGAAGGGAGGAGGAGGGACT
GCTCACCCTCAGCAAGGCACTGGAGCAGCTCTTGGTTTGGATCAACGCCT
ATCTAATGTTGCGCAAGCAAAACAAGATCACAGTCATTGCCTGTGATGCG
CAGAAGAGTGAATTCTTGTTCTCTACAGAGCACCACCAGCAGAGTGATAG
TGAGTCGAGGAGAAGCGACGGACCTGTGGCGCTGCTCACAGCGAAGCTCC
GTCAAGTGATGGAGAGGAGCACCAACGCACCGTCCTCTGCAACTCGTAGG
GGGTCACAACTGTCCAGTGCTCTCTCTCTCGCACTGTGTCACATCAACCA
AGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121209:1..354+

>mRNA_M-pyrifera_M_contig121209.4370.1 ID=mRNA_M-pyrifera_M_contig121209.4370.1|Name=mRNA_M-pyrifera_M_contig121209.4370.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig121209:1..354+ (Macrocystis pyrifera P11B4 male)
GTGAACGTCAACTTCTGGACTGGAAGGGTGGGAAGGGAGGAGGAGGGACT
GCTCACCCTCAGCAAGGCACTGGAGCAGCTCTTGGTTTGGATCAACGCCT
ATCTAATGTTGCGCAAGCAAAACAAGATCACAGTCATTGCCTGTGATGCG
CAGAAGAGTGAATTCTTGTTCTCTACAGAGCACCACCAGCAGAGTGATAG
TGAGTCGAGGAGAAGCGACGGACCTGTGGCGCTGCTCACAGCGAAGCTCC
GTCAAGTGATGGAGAGGAGCACCAACGCACCGTCCTCTGCAACTCGTAGG
GGGTCACAACTGTCCAGTGCTCTCTCTCTCGCACTGTGTCACATCAACCA
AGTGGTGAACGTCAACTTCTGGACTGGAAGGGTGGGAAGGGAGGAGGAGG
GACTGCTCACCCTCAGCAAGGCACTGGAGCAGCTCTTGGTTTGGATCAAC
GCCTATCTAATGTTGCGCAAGCAAAACAAGATCACAGTCATTGCCTGTGA
TGCGCAGAAGAGTGAATTCTTGTTCTCTACAGAGCACCACCAGCAGAGTG
ATAGTGAGTCGAGGAGAAGCGACGGACCTGTGGCGCTGCTCACAGCGAAG
CTCCGTCAAGTGATGGAGAGGAGCACCAACGCACCGTCCTCTGCAACTCG
TAGGGGGTCACAACTGTCCAGTGCTCTCTCTCTCGCACTGTGTCACATCA
ACCAAGTG
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