mRNA_M-pyrifera_M_contig121206.4369.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121206.4369.1
Unique NamemRNA_M-pyrifera_M_contig121206.4369.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121206.4369.1 vs. uniprot
Match: A0A7S0XUQ8_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XUQ8_HEMAN)

HSP 1 Score: 102 bits (253), Expect = 2.470e-23
Identity = 54/128 (42.19%), Postives = 79/128 (61.72%), Query Frame = 1
Query:   37 ASTPLFFELLQLHPLKLTLSFTSNSDIPLMASWLPVTEALAPVKAVLSAMGAVLTNIDQAPLRLNALVVENACDTQDALVAKIMAHYIEQGKKEAYKVLWSLDFMGNPVSLASSLGSGWKDFLYEPAE 420
            A   ++ ELLQLHP+ +T+SFT    I   AS      +  P+   + A+G V+T+ID+AP+ LNALV+E    T   LV+ I  HY  Q   + YK++ + +F+GNPV L ++LG+G  DF YEPA+
Sbjct:  159 AQDKIYIELLQLHPILVTMSFTGTGAIMQRASTEGGGLSYNPMFGAMKALGVVVTSIDKAPIELNALVLERPFATSQELVSSIRKHYKTQLLHQLYKLIGAFEFLGNPVGLVNNLGTGVHDFFYEPAQ 286          
BLAST of mRNA_M-pyrifera_M_contig121206.4369.1 vs. uniprot
Match: A0A7S0VDB1_9CRYP (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A7S0VDB1_9CRYP)

HSP 1 Score: 101 bits (251), Expect = 5.440e-23
Identity = 54/128 (42.19%), Postives = 79/128 (61.72%), Query Frame = 1
Query:   37 ASTPLFFELLQLHPLKLTLSFTSNSDIPLMASWLPVTEALAPVKAVLSAMGAVLTNIDQAPLRLNALVVENACDTQDALVAKIMAHYIEQGKKEAYKVLWSLDFMGNPVSLASSLGSGWKDFLYEPAE 420
            A   ++ ELLQLHP+ +TLSFT    I   AS      +  P+   + A+G V+T+ID+AP+ LNALV+E    T   L++ I  HY  Q   + YK++ + +F+GNPV L ++LG+G  DF YEPA+
Sbjct:  144 AEDKIYIELLQLHPILVTLSFTGTGAIMQRASTEGGGLSYNPMFGAMKALGVVVTSIDRAPIELNALVLERPFATSHELLSSIRKHYKTQLLHQLYKLIGAFEFLGNPVGLVNNLGTGVHDFFYEPAQ 271          
BLAST of mRNA_M-pyrifera_M_contig121206.4369.1 vs. uniprot
Match: A0A7S0QEK5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QEK5_9CRYP)

HSP 1 Score: 96.7 bits (239), Expect = 1.380e-22
Identity = 55/123 (44.72%), Postives = 77/123 (62.60%), Query Frame = 1
Query:   52 FFELLQLHPLKLTLSFTSNSDIPLMASWLPVTEALAPVKAVLSAMGAVLTNIDQAPLRLNALVVENACDTQDALVAKIMAHYIEQGKKEAYKVLWSLDFMGNPVSLASSLGSGWKDFLYEPAE 420
            +FELL+L P+ + LSF     I   AS      +  P+ A L A+G V+T ID+AP+ LNALV+E    +Q  LVA I  HY  Q  ++ YK++ S +F+GNPV L ++LG+G  DF YEPA+
Sbjct:    6 YFELLELQPVLVNLSFYGTGAILQRASSEGGGLSYNPMFASLKALGVVITTIDRAPIALNALVLERPFASQRELVASIRNHYRTQLIQQLYKLVGSFEFLGNPVGLVNNLGTGVHDFFYEPAQ 128          
BLAST of mRNA_M-pyrifera_M_contig121206.4369.1 vs. uniprot
Match: L1IXT3_GUITC (VPS13_C domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IXT3_GUITC)

HSP 1 Score: 100 bits (249), Expect = 2.080e-22
Identity = 54/124 (43.55%), Postives = 79/124 (63.71%), Query Frame = 1
Query:   49 LFFELLQLHPLKLTLSFTSNSDIPLMASWLPVTEALAPVKAVLSAMGAVLTNIDQAPLRLNALVVENACDTQDALVAKIMAHYIEQGKKEAYKVLWSLDFMGNPVSLASSLGSGWKDFLYEPAE 420
            ++FELLQLHP+ + LSF     +   AS      +  P+ A + A+G V+TNID+AP+ LNALV+E    T   L + I  HY  Q  ++ YK++ S +F+GNPV L ++LG+G +DF YEPA+
Sbjct:    1 MYFELLQLHPIVVNLSFYGTGALMDRASTEGGGLSYNPMFAAMKALGVVVTNIDKAPICLNALVLERPFATSQELSSSIRKHYRTQLIQQLYKLVGSFEFLGNPVGLVNNLGTGVQDFFYEPAQ 124          
BLAST of mRNA_M-pyrifera_M_contig121206.4369.1 vs. uniprot
Match: A0A7S4JFQ1_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4JFQ1_GUITH)

HSP 1 Score: 100 bits (249), Expect = 6.730e-22
Identity = 54/124 (43.55%), Postives = 79/124 (63.71%), Query Frame = 1
Query:   49 LFFELLQLHPLKLTLSFTSNSDIPLMASWLPVTEALAPVKAVLSAMGAVLTNIDQAPLRLNALVVENACDTQDALVAKIMAHYIEQGKKEAYKVLWSLDFMGNPVSLASSLGSGWKDFLYEPAE 420
            ++FELLQLHP+ + LSF     +   AS      +  P+ A + A+G V+TNID+AP+ LNALV+E    T   L + I  HY  Q  ++ YK++ S +F+GNPV L ++LG+G +DF YEPA+
Sbjct: 1240 MYFELLQLHPIVVNLSFYGTGALMDRASTEGGGLSYNPMFAAMKALGVVVTNIDKAPICLNALVLERPFATSQELSSSIRKHYRTQLIQQLYKLVGSFEFLGNPVGLVNNLGTGVQDFFYEPAQ 1363          
BLAST of mRNA_M-pyrifera_M_contig121206.4369.1 vs. uniprot
Match: A0A7S0HSC2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HSC2_9CRYP)

HSP 1 Score: 98.6 bits (244), Expect = 3.100e-21
Identity = 52/124 (41.94%), Postives = 79/124 (63.71%), Query Frame = 1
Query:   49 LFFELLQLHPLKLTLSFTSNSDIPLMASWLPVTEALAPVKAVLSAMGAVLTNIDQAPLRLNALVVENACDTQDALVAKIMAHYIEQGKKEAYKVLWSLDFMGNPVSLASSLGSGWKDFLYEPAE 420
            ++FE+LQLHP+ + LSF     +   AS      +  P+ A + A+G V+TNID+AP+ +NALV+E    T   L + I  HY  Q  ++ YK++ S +F+GNPV L ++LG+G +DF YEPA+
Sbjct:  835 MYFEILQLHPVVVNLSFYGTGALMDRASTEGGGLSYNPMFAAMKALGVVVTNIDKAPICMNALVLERPFATSQELSSSIRKHYRTQLIQQLYKLVGSFEFLGNPVGLVNNLGTGVQDFFYEPAQ 958          
BLAST of mRNA_M-pyrifera_M_contig121206.4369.1 vs. uniprot
Match: A0A2R5G2R3_9STRA (Vacuolar protein sorting-associated protein 13A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G2R3_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 3.310e-21
Identity = 53/143 (37.06%), Postives = 84/143 (58.74%), Query Frame = 1
Query:   31 PDASTPLFFELLQLHPLKLTLSFTSNSDIPLM--------------ASWLPVTEALAPVKAVLSAMGAVLTNIDQAPLRLNALVVENACDTQDALVAKIMAHYIEQGKKEAYKVLWSLDFMGNPVSLASSLGSGWKDFLYEPA 417
            P +   L+ E LQ+HP+K+ +SF+  S+   +               +    +  + P++  L+AMGA L N+D APLRLNALV++N+  T + ++ +I AHY  Q  ++AY +L S+D +G+P  L  +LG+G  DF YEPA
Sbjct: 4941 PASQRKLYIEELQVHPIKMHVSFSFRSNAMRIHGHQDPGLGFAGQYGASAAESGTMNPLRFALNAMGASLANVDNAPLRLNALVLQNSLSTPETILGRIFAHYRSQALRQAYLILGSVDLLGDPRGLVQNLGAGVLDFFYEPA 5083          
BLAST of mRNA_M-pyrifera_M_contig121206.4369.1 vs. uniprot
Match: A0A6A7G9E8_9CRUS (Vacuolar protein sorting-associated protein 13 family protein (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G9E8_9CRUS)

HSP 1 Score: 97.4 bits (241), Expect = 7.520e-21
Identity = 52/131 (39.69%), Postives = 74/131 (56.49%), Query Frame = 1
Query:   28 PPDASTPLFFELLQLHPLKLTLSFTSNSDIPLMASWLPVTEALAPVKAVLSAMGAVLTNIDQAPLRLNALVVENACDTQDALVAKIMAHYIEQGKKEAYKVLWSLDFMGNPVSLASSLGSGWKDFLYEPAE 420
            P  A T  + + LQL P+   +SF  N+++              P + VL   GA L +ID+AP+RLNALVVENA  T  +L+  I++HY  Q   E YK++ S++ +GNPV L  +LG G  DF Y P +
Sbjct:  190 PSQAETQYYVKFLQLQPVAANISFILNTNVRKSGF------VFNPFELVLQVFGAALGSIDEAPIRLNALVVENASGTMGSLITPIVSHYTMQVLSEVYKIMGSIELLGNPVQLVGNLGDGIMDFFYLPQQ 314          
BLAST of mRNA_M-pyrifera_M_contig121206.4369.1 vs. uniprot
Match: A0A6T6VF78_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A6T6VF78_9EUKA)

HSP 1 Score: 96.3 bits (238), Expect = 1.670e-20
Identity = 58/141 (41.13%), Postives = 83/141 (58.87%), Query Frame = 1
Query:    1 MFSFSPEPAPPDASTPLFFELLQLHPLKLTLSFTSNSDIPLMASWLPVTEALA--PVKAVLSAMGAVLTNIDQAPLRLNALVVENACDTQDALVAKIMAHYIEQGKKEAYKVLWSLDFMGNPVSLASSLGSGWKDFLYEPA 417
            M S S  P P   ++ +FF  LQLHP+ + +S   +S++    S       +   P+K + +A G  + +ID+APLRLNAL +E+A  +   L+  I+ HY  Q  +EAYKVL SL+ +GNPV L  +LG G  DF YEPA
Sbjct:   68 MKSSSLYPIPESGASKMFFSFLQLHPIAIDISLELSSEL---RSEYATGGGIGFNPLKWIRNAAGTAI-DIDEAPLRLNALTIEDAYGSTSTLLNPIIKHYTSQVIREAYKVLGSLEILGNPVQLVGNLGEGVMDFFYEPA 204          
BLAST of mRNA_M-pyrifera_M_contig121206.4369.1 vs. uniprot
Match: A0A0L0DV88_THETB (Vacuolar sorting protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DV88_THETB)

HSP 1 Score: 95.1 bits (235), Expect = 5.350e-20
Identity = 49/127 (38.58%), Postives = 79/127 (62.20%), Query Frame = 1
Query:   40 STPLFFELLQLHPLKLTLSFTSNSDIPLMASWLPVTEALAPVKAVLSAMGAVLTNIDQAPLRLNALVVENACDTQDALVAKIMAHYIEQGKKEAYKVLWSLDFMGNPVSLASSLGSGWKDFLYEPAE 420
            S  ++FE+L L+ +K+ ++F ++ ++  +       +  +P++  L A+G  + NID APLRLN LV+E+   TQ  L  +I  HY+ QG +E+YK+L S DF+GNPV L ++L  G  DF   PA+
Sbjct: 3566 SKQMYFEMLSLNSIKVNVTFLTSIEVDAV-------DKDSPLRGFLKAIGVAVVNIDNAPLRLNTLVLEHPFATQAELTDRIARHYVLQGLEESYKILGSFDFLGNPVGLFNNLSEGLLDFFVLPAK 3685          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121206.4369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0XUQ8_HEMAN2.470e-2342.19Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0VDB1_9CRYP5.440e-2342.19Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A7S0QEK5_9CRYP1.380e-2244.72Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
L1IXT3_GUITC2.080e-2243.55VPS13_C domain-containing protein n=1 Tax=Guillard... [more]
A0A7S4JFQ1_GUITH6.730e-2243.55Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A7S0HSC2_9CRYP3.100e-2141.94Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A2R5G2R3_9STRA3.310e-2137.06Vacuolar protein sorting-associated protein 13A n=... [more]
A0A6A7G9E8_9CRUS7.520e-2139.69Vacuolar protein sorting-associated protein 13 fam... [more]
A0A6T6VF78_9EUKA1.670e-2041.13Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A0L0DV88_THETB5.350e-2038.58Vacuolar sorting protein n=1 Tax=Thecamonas trahen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121206contigM-pyrifera_M_contig121206:54..473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue2.5e-18
Seed eggNOG ortholog227086.JGI_V11_137499
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size420
Cds size420
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.6868184-CDS-M-pyrifera_M_contig121206:53..4731622815731.6868184-CDS-M-pyrifera_M_contig121206:53..473Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121206 54..473 +
1692277543.0792592-CDS-M-pyrifera_M_contig121206:53..4731692277543.0792592-CDS-M-pyrifera_M_contig121206:53..473Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121206 54..473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121206.4369.1prot_M-pyrifera_M_contig121206.4369.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121206 54..473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121206.4369.1

>prot_M-pyrifera_M_contig121206.4369.1 ID=prot_M-pyrifera_M_contig121206.4369.1|Name=mRNA_M-pyrifera_M_contig121206.4369.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=140bp
MFSFSPEPAPPDASTPLFFELLQLHPLKLTLSFTSNSDIPLMASWLPVTE
ALAPVKAVLSAMGAVLTNIDQAPLRLNALVVENACDTQDALVAKIMAHYI
EQGKKEAYKVLWSLDFMGNPVSLASSLGSGWKDFLYEPAE
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mRNA from alignment at M-pyrifera_M_contig121206:54..473+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121206.4369.1 ID=mRNA_M-pyrifera_M_contig121206.4369.1|Name=mRNA_M-pyrifera_M_contig121206.4369.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig121206:54..473+ (Macrocystis pyrifera P11B4 male)
ATGTTCAGCTTCTCGCCGGAGCCAGCTCCGCCGGACGCCAGCACGCCGCT CTTCTTCGAGCTGCTACAGCTGCACCCGCTGAAGCTGACCCTGTCGTTCA CCAGCAACAGCGACATCCCACTCATGGCGTCATGGCTGCCGGTCACGGAG GCGTTGGCGCCGGTCAAGGCTGTGCTGTCTGCCATGGGTGCCGTGCTCAC CAACATCGACCAGGCGCCGCTGCGGCTGAATGCGCTGGTGGTGGAGAACG CGTGCGACACGCAGGACGCGCTGGTGGCCAAGATCATGGCACACTACATC GAGCAGGGGAAGAAGGAAGCGTACAAGGTACTGTGGTCGCTGGATTTCAT GGGCAACCCTGTGTCGCTGGCCAGCTCGCTCGGCAGCGGTTGGAAGGACT TCTTGTACGAACCTGCAGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121206:54..473+

>mRNA_M-pyrifera_M_contig121206.4369.1 ID=mRNA_M-pyrifera_M_contig121206.4369.1|Name=mRNA_M-pyrifera_M_contig121206.4369.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=840bp|location=Sequence derived from alignment at M-pyrifera_M_contig121206:54..473+ (Macrocystis pyrifera P11B4 male)
ATGTTCAGCTTCTCGCCGGAGCCAGCTCCGCCGGACGCCAGCACGCCGCT
CTTCTTCGAGCTGCTACAGCTGCACCCGCTGAAGCTGACCCTGTCGTTCA
CCAGCAACAGCGACATCCCACTCATGGCGTCATGGCTGCCGGTCACGGAG
GCGTTGGCGCCGGTCAAGGCTGTGCTGTCTGCCATGGGTGCCGTGCTCAC
CAACATCGACCAGGCGCCGCTGCGGCTGAATGCGCTGGTGGTGGAGAACG
CGTGCGACACGCAGGACGCGCTGGTGGCCAAGATCATGGCACACTACATC
GAGCAGGGGAAGAAGGAAGCGTACAAGGTACTGTGGTCGCTGGATTTCAT
GGGCAACCCTGTGTCGCTGGCCAGCTCGCTCGGCAGCGGTTGGAAGGACT
TCTTGTACGAACCTGCAGAGATGTTCAGCTTCTCGCCGGAGCCAGCTCCG
CCGGACGCCAGCACGCCGCTCTTCTTCGAGCTGCTACAGCTGCACCCGCT
GAAGCTGACCCTGTCGTTCACCAGCAACAGCGACATCCCACTCATGGCGT
CATGGCTGCCGGTCACGGAGGCGTTGGCGCCGGTCAAGGCTGTGCTGTCT
GCCATGGGTGCCGTGCTCACCAACATCGACCAGGCGCCGCTGCGGCTGAA
TGCGCTGGTGGTGGAGAACGCGTGCGACACGCAGGACGCGCTGGTGGCCA
AGATCATGGCACACTACATCGAGCAGGGGAAGAAGGAAGCGTACAAGGTA
CTGTGGTCGCTGGATTTCATGGGCAACCCTGTGTCGCTGGCCAGCTCGCT
CGGCAGCGGTTGGAAGGACTTCTTGTACGAACCTGCAGAG
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