mRNA_M-pyrifera_M_contig121196.4368.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121196.4368.1
Unique NamemRNA_M-pyrifera_M_contig121196.4368.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121196.4368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121196contigM-pyrifera_M_contig121196:117..524 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size408
Cds size390
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.6357088-CDS-M-pyrifera_M_contig121196:116..5061622815731.6357088-CDS-M-pyrifera_M_contig121196:116..506Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121196 117..506 -
1692277543.0619528-CDS-M-pyrifera_M_contig121196:116..5061692277543.0619528-CDS-M-pyrifera_M_contig121196:116..506Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121196 117..506 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.6490371-UTR-M-pyrifera_M_contig121196:506..5241622815731.6490371-UTR-M-pyrifera_M_contig121196:506..524Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121196 507..524 -
1692277543.070504-UTR-M-pyrifera_M_contig121196:506..5241692277543.070504-UTR-M-pyrifera_M_contig121196:506..524Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121196 507..524 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121196.4368.1prot_M-pyrifera_M_contig121196.4368.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121196 117..506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121196.4368.1

>prot_M-pyrifera_M_contig121196.4368.1 ID=prot_M-pyrifera_M_contig121196.4368.1|Name=mRNA_M-pyrifera_M_contig121196.4368.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
MDLKAFLFRGRVLTQYRAFLRAARRMPDRESAAGVREEVRAAFRRGAQVR
DSVAARQLMMDGSRQLEMVEGMAMMAGPEDELAPGIGGGGGGGVPVAMER
GADGEVYVEGRFMLGRGWPWESSTQARDM*
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mRNA from alignment at M-pyrifera_M_contig121196:117..524-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121196.4368.1 ID=mRNA_M-pyrifera_M_contig121196.4368.1|Name=mRNA_M-pyrifera_M_contig121196.4368.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig121196:117..524- (Macrocystis pyrifera P11B4 male)
CCGCTCCTGGGCGGTAGCATGGATCTGAAGGCGTTCTTGTTCCGCGGACG
AGTACTCACGCAGTATAGAGCGTTCCTGCGTGCTGCAAGACGGATGCCAG
ACCGAGAGAGCGCGGCTGGAGTGCGGGAAGAAGTGCGGGCAGCGTTTCGG
AGAGGCGCTCAAGTTCGCGATTCTGTCGCCGCTCGTCAGTTGATGATGGA
TGGATCCAGGCAACTTGAGATGGTGGAAGGTATGGCCATGATGGCGGGCC
CAGAGGATGAGCTGGCACCTGGTATCGGCGGCGGCGGCGGCGGAGGGGTG
CCTGTAGCAATGGAACGCGGAGCAGACGGGGAGGTGTACGTGGAAGGGCG
GTTCATGTTGGGGAGGGGATGGCCATGGGAATCATCAACACAGGCTAGGG
ACATGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121196:117..524-

>mRNA_M-pyrifera_M_contig121196.4368.1 ID=mRNA_M-pyrifera_M_contig121196.4368.1|Name=mRNA_M-pyrifera_M_contig121196.4368.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig121196:117..524- (Macrocystis pyrifera P11B4 male)
ATGGATCTGAAGGCGTTCTTGTTCCGCGGACGAGTACTCACGCAGTATAG
AGCGTTCCTGCGTGCTGCAAGACGGATGCCAGACCGAGAGAGCGCGGCTG
GAGTGCGGGAAGAAGTGCGGGCAGCGTTTCGGAGAGGCGCTCAAGTTCGC
GATTCTGTCGCCGCTCGTCAGTTGATGATGGATGGATCCAGGCAACTTGA
GATGGTGGAAGGTATGGCCATGATGGCGGGCCCAGAGGATGAGCTGGCAC
CTGGTATCGGCGGCGGCGGCGGCGGAGGGGTGCCTGTAGCAATGGAACGC
GGAGCAGACGGGGAGGTGTACGTGGAAGGGCGGTTCATGTTGGGGAGGGG
ATGGCCATGGGAATCATCAACACAGGCTAGGGACATGTAAATGGATCTGA
AGGCGTTCTTGTTCCGCGGACGAGTACTCACGCAGTATAGAGCGTTCCTG
CGTGCTGCAAGACGGATGCCAGACCGAGAGAGCGCGGCTGGAGTGCGGGA
AGAAGTGCGGGCAGCGTTTCGGAGAGGCGCTCAAGTTCGCGATTCTGTCG
CCGCTCGTCAGTTGATGATGGATGGATCCAGGCAACTTGAGATGGTGGAA
GGTATGGCCATGATGGCGGGCCCAGAGGATGAGCTGGCACCTGGTATCGG
CGGCGGCGGCGGCGGAGGGGTGCCTGTAGCAATGGAACGCGGAGCAGACG
GGGAGGTGTACGTGGAAGGGCGGTTCATGTTGGGGAGGGGATGGCCATGG
GAATCATCAACACAGGCTAGGGACATGTAA
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