mRNA_M-pyrifera_M_contig121168.4360.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121168.4360.1
Unique NamemRNA_M-pyrifera_M_contig121168.4360.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121168.4360.1 vs. uniprot
Match: UPI001EAFDDA3 (regulator of G-protein signaling 7-like isoform X1 n=4 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EAFDDA3)

HSP 1 Score: 50.4 bits (119), Expect = 6.260e-5
Identity = 26/67 (38.81%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:   88 MAQKLYERFLLPGSAQELNLDYIVKVNVENALKSGGVDKSTFDAPMLSCFNLMAADPFFKFLKSEKW 288
            M  ++Y+ FL PGSA E+N+D      V+  LK    D+ TF+A     F LM  D + +FL+SE++
Sbjct:  357 MIDRIYDEFLNPGSAHEINIDGKTMEIVQQNLKKEKPDRFTFEAAQEHIFLLMKKDSYARFLRSEQY 423
[Close]
BLAST of mRNA_M-pyrifera_M_contig121168.4360.1 vs. uniprot
Match: UPI001EE584D7 (regulator of G-protein signaling 7-like isoform X1 n=3 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE584D7)

HSP 1 Score: 50.4 bits (119), Expect = 6.260e-5
Identity = 26/67 (38.81%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:   88 MAQKLYERFLLPGSAQELNLDYIVKVNVENALKSGGVDKSTFDAPMLSCFNLMAADPFFKFLKSEKW 288
            M  ++Y+ FL PGSA E+N+D      V+  LK    D+ TF+A     F LM  D + +FL+SE++
Sbjct:  357 MIDRIYDEFLNPGSAHEINIDGKTMEIVQQNLKKEKPDRFTFEAAQEHIFLLMKKDSYARFLRSEQY 423
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121168.4360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001EAFDDA36.260e-538.81regulator of G-protein signaling 7-like isoform X1... [more]
UPI001EE584D76.260e-538.81regulator of G-protein signaling 7-like isoform X1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121168contigM-pyrifera_M_contig121168:179..493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size303
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.14364-CDS-M-pyrifera_M_contig121168:178..4811622815731.14364-CDS-M-pyrifera_M_contig121168:178..481Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121168 179..481 -
1692277542.7988465-CDS-M-pyrifera_M_contig121168:178..4811692277542.7988465-CDS-M-pyrifera_M_contig121168:178..481Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121168 179..481 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.1560266-UTR-M-pyrifera_M_contig121168:481..4931622815731.1560266-UTR-M-pyrifera_M_contig121168:481..493Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121168 482..493 -
1692277542.8084912-UTR-M-pyrifera_M_contig121168:481..4931692277542.8084912-UTR-M-pyrifera_M_contig121168:481..493Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121168 482..493 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121168.4360.1prot_M-pyrifera_M_contig121168.4360.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121168 179..481 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121168.4360.1

>prot_M-pyrifera_M_contig121168.4360.1 ID=prot_M-pyrifera_M_contig121168.4360.1|Name=mRNA_M-pyrifera_M_contig121168.4360.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
MAQERQKSGAKPTQEEQEKAKELLTMAQKLYERFLLPGSAQELNLDYIVK
VNVENALKSGGVDKSTFDAPMLSCFNLMAADPFFKFLKSEKWWRLARAKR
P
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mRNA from alignment at M-pyrifera_M_contig121168:179..493-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121168.4360.1 ID=mRNA_M-pyrifera_M_contig121168.4360.1|Name=mRNA_M-pyrifera_M_contig121168.4360.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig121168:179..493- (Macrocystis pyrifera P11B4 male)
GAGGTGGCCCGCATGGCGCAGGAGCGTCAGAAGAGCGGCGCGAAGCCCAC
TCAAGAGGAGCAGGAGAAGGCCAAGGAGCTCCTCACCATGGCGCAGAAGC
TGTACGAGCGGTTCCTCTTGCCAGGCTCCGCGCAAGAGCTCAACCTAGAC
TACATCGTCAAGGTCAACGTCGAGAACGCCCTGAAGAGCGGGGGAGTGGA
CAAGTCCACTTTCGATGCCCCAATGCTCTCCTGCTTCAACCTGATGGCGG
CAGACCCCTTCTTCAAGTTCCTCAAGTCGGAGAAGTGGTGGCGCCTGGCG
CGTGCGAAGCGGCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121168:179..493-

>mRNA_M-pyrifera_M_contig121168.4360.1 ID=mRNA_M-pyrifera_M_contig121168.4360.1|Name=mRNA_M-pyrifera_M_contig121168.4360.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig121168:179..493- (Macrocystis pyrifera P11B4 male)
ATGGCGCAGGAGCGTCAGAAGAGCGGCGCGAAGCCCACTCAAGAGGAGCA
GGAGAAGGCCAAGGAGCTCCTCACCATGGCGCAGAAGCTGTACGAGCGGT
TCCTCTTGCCAGGCTCCGCGCAAGAGCTCAACCTAGACTACATCGTCAAG
GTCAACGTCGAGAACGCCCTGAAGAGCGGGGGAGTGGACAAGTCCACTTT
CGATGCCCCAATGCTCTCCTGCTTCAACCTGATGGCGGCAGACCCCTTCT
TCAAGTTCCTCAAGTCGGAGAAGTGGTGGCGCCTGGCGCGTGCGAAGCGG
CCGATGGCGCAGGAGCGTCAGAAGAGCGGCGCGAAGCCCACTCAAGAGGA
GCAGGAGAAGGCCAAGGAGCTCCTCACCATGGCGCAGAAGCTGTACGAGC
GGTTCCTCTTGCCAGGCTCCGCGCAAGAGCTCAACCTAGACTACATCGTC
AAGGTCAACGTCGAGAACGCCCTGAAGAGCGGGGGAGTGGACAAGTCCAC
TTTCGATGCCCCAATGCTCTCCTGCTTCAACCTGATGGCGGCAGACCCCT
TCTTCAAGTTCCTCAAGTCGGAGAAGTGGTGGCGCCTGGCGCGTGCGAAG
CGGCCG
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