mRNA_M-pyrifera_M_contig121152.4351.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121152.4351.1
Unique NamemRNA_M-pyrifera_M_contig121152.4351.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121152.4351.1 vs. uniprot
Match: A0A7S4BCY7_CHRCT (3-phosphoshikimate 1-carboxyvinyltransferase (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BCY7_CHRCT)

HSP 1 Score: 99.0 bits (245), Expect = 5.020e-22
Identity = 52/100 (52.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:    1 IVIVGMRGAGKTSLGSSTAKVLGYEFLDADQVLEARLGRSIKEHIAEHGWDSFRDEEHAILASLLSETSVSDGKGRVVACGGGVVERAENRALLAAHWPV 300
            +V++GMRGAGKT LG + A  LG++F+D D + EAR G  I + +A  GW +FR+ E AIL   LS  S       V+ACGGG+VE AE RA+L AHWPV
Sbjct:  848 VVLIGMRGAGKTHLGKAAAAHLGWDFIDLDHLYEARHG-PIMQTVAAEGWSAFRERELAILKETLSTKSART----VIACGGGIVETAEARAVLRAHWPV 942          
BLAST of mRNA_M-pyrifera_M_contig121152.4351.1 vs. uniprot
Match: A0A7S0PXC9_9EUKA (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PXC9_9EUKA)

HSP 1 Score: 97.8 bits (242), Expect = 1.280e-21
Identity = 55/100 (55.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:    1 IVIVGMRGAGKTSLGSSTAKVLGYEFLDADQVLEARLGRSIKEHIAEHGWDSFRDEEHAILASLLSETSVSDGKGRVVACGGGVVERAENRALLAAHWPV 300
            +V+VGMRGAGKT LG + A  LG++FLD D + EAR G  I E +   GW SFR  E      LL ET  S     V+ACGGG+VE AE RA+LAAHWPV
Sbjct:  400 VVLVGMRGAGKTHLGRAAAAALGWQFLDLDHLYEARHGPII-EAVEAEGWPSFRARE----LQLLKETLSSRPARTVIACGGGIVETAEARAVLAAHWPV 494          
BLAST of mRNA_M-pyrifera_M_contig121152.4351.1 vs. uniprot
Match: A0A0M0JNT7_9EUKA (Pentafunctional protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JNT7_9EUKA)

HSP 1 Score: 97.4 bits (241), Expect = 1.320e-21
Identity = 51/100 (51.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:    1 IVIVGMRGAGKTSLGSSTAKVLGYEFLDADQVLEARLGRSIKEHIAEHGWDSFRDEEHAILASLLSETSVSDGKGRVVACGGGVVERAENRALLAAHWPV 300
            IV++GMRGAGKT LG + A  LG  F+D D + EA  G+ I + +   GW +FR  E A+L   L+E +   G+GRVVACGGG+VE    R LL AHWPV
Sbjct:   21 IVLIGMRGAGKTHLGRAAAAALGLPFIDMDHLYEAEHGK-IMDTVNTEGWPTFRQREVALLKRTLAEDA-EGGRGRVVACGGGIVETEAGRELLRAHWPV 118          
BLAST of mRNA_M-pyrifera_M_contig121152.4351.1 vs. uniprot
Match: A0A0D7AWR8_9AGAR (Quinate repressor protein n=1 Tax=Cylindrobasidium torrendii FP15055 ss-10 TaxID=1314674 RepID=A0A0D7AWR8_9AGAR)

HSP 1 Score: 96.3 bits (238), Expect = 4.370e-21
Identity = 52/103 (50.49%), Postives = 69/103 (66.99%), Query Frame = 1
Query:    1 IVIVGMRGAGKTSLGSSTAKVLGYEFLDADQVLEARLGRSIKEHIAEHGWDSFRDEEHAILASLLSETSVSDGKGRVVACGGGVVERAENRALLAA---HWPV 300
            IV++GMRG GKT+LG+  AK LG+E LD D++LE +   SI ++IA HGW++FR  E  I+  +L         G+V+ACGGGVVE  ENRA+LA    H PV
Sbjct:   28 IVLIGMRGVGKTTLGTIAAKALGWELLDTDRILENQEKMSISDYIATHGWEAFRALESQIIHDILRVHHT----GKVIACGGGVVELEENRAMLAKFRQHGPV 126          
BLAST of mRNA_M-pyrifera_M_contig121152.4351.1 vs. uniprot
Match: UPI001902ED59 (type I 3-dehydroquinase-domain-containing protein n=1 Tax=Cantharellus anzutake TaxID=1750568 RepID=UPI001902ED59)

HSP 1 Score: 94.4 bits (233), Expect = 2.080e-20
Identity = 47/94 (50.00%), Postives = 65/94 (69.15%), Query Frame = 1
Query:    1 IVIVGMRGAGKTSLGSSTAKVLGYEFLDADQVLEARLGRSIKEHIAEHGWDSFRDEEHAILASLLSETSVSDGKGRVVACGGGVVERAENRALL 282
            I++VGMRG GKT+L    +K LG+E +DAD +  A + + I  +I+ HGWDSFR++E  +L +LL     +    +V+ACGGGVVERAENR LL
Sbjct:   27 IILVGMRGVGKTTLARIASKALGWEAIDADTIFAAHVKQDIYSYISTHGWDSFRNKESQLLNALLDRYPTN----KVIACGGGVVERAENRELL 116          
BLAST of mRNA_M-pyrifera_M_contig121152.4351.1 vs. uniprot
Match: S2JQW8_MUCC1 (Pentafunctional AROM polypeptide n=2 Tax=Mucor TaxID=4830 RepID=S2JQW8_MUCC1)

HSP 1 Score: 94.4 bits (233), Expect = 2.140e-20
Identity = 49/97 (50.52%), Postives = 66/97 (68.04%), Query Frame = 1
Query:    1 IVIVGMRGAGKTSLGSSTAKVLGYEFLDADQVLEARLGRSIKEHIAEHGWDSFRDEEHAILASLLSETSVSDGKGRVVACGGGVVERAENRALLAAH 291
            +VIVGMRG GKT+LG   A+VLG++F+D DQ  E  L  ++ E I   GWD FR +E A L  LL++ S   G+G V+ACGGG++E AE+R +L  H
Sbjct:  898 MVIVGMRGVGKTTLGQYAAEVLGFKFIDVDQYFEETLKTTVFEFINTWGWDQFRIKETAALKELLAKDS-QYGRGYVIACGGGIIETAESRDVLKEH 993          
BLAST of mRNA_M-pyrifera_M_contig121152.4351.1 vs. uniprot
Match: A0A7S0IKK0_9EUKA (Quinate repressor protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IKK0_9EUKA)

HSP 1 Score: 93.2 bits (230), Expect = 5.230e-20
Identity = 51/97 (52.58%), Postives = 60/97 (61.86%), Query Frame = 1
Query:   10 VGMRGAGKTSLGSSTAKVLGYEFLDADQVLEARLGRSIKEHIAEHGWDSFRDEEHAILASLLSETSVSDGKGRVVACGGGVVERAENRALLAAHWPV 300
            +GMRGAGKT LG + A  LG+ FLD D V EAR G+ I + +   GW  FR  E      LL ET  S     V+ACGGG+VE AE RA+L AHWPV
Sbjct:    1 IGMRGAGKTHLGKAAAVSLGWHFLDMDSVYEARFGK-IMQTVEADGWPVFRRRE----LELLKETLASHAAHTVIACGGGIVETAEARAVLVAHWPV 92          
BLAST of mRNA_M-pyrifera_M_contig121152.4351.1 vs. uniprot
Match: S7TB75_9DELT (Shikimate kinase n=1 Tax=Desulfohalovibrio alkalitolerans DSM 16529 TaxID=1121439 RepID=S7TB75_9DELT)

HSP 1 Score: 89.4 bits (220), Expect = 5.430e-20
Identity = 46/95 (48.42%), Postives = 65/95 (68.42%), Query Frame = 1
Query:    1 IVIVGMRGAGKTSLGSSTAKVLGYEFLDADQVLEARLGRSIKEHIAEHGWDSFRDEEHAILASLLSETSVSDGKGRVVACGGGVVERAENRALLA 285
            I +VG RG+GKT++G   A+ LG  F+DAD+ L   LG+SI +++A HGW++FR+ EH  LA + +        G+VVA GGGVV RA+NR L+A
Sbjct:   38 IYLVGPRGSGKTTVGRLAAERLGLRFVDADEALVQSLGQSIADYVAAHGWEAFREREHETLARIAAS------HGQVVATGGGVVLRADNRELMA 126          
BLAST of mRNA_M-pyrifera_M_contig121152.4351.1 vs. uniprot
Match: A0A0B7N4X1_9FUNG (Pentafunctional AROM polypeptide n=5 Tax=Mucoraceae TaxID=34489 RepID=A0A0B7N4X1_9FUNG)

HSP 1 Score: 93.2 bits (230), Expect = 5.430e-20
Identity = 49/97 (50.52%), Postives = 65/97 (67.01%), Query Frame = 1
Query:    1 IVIVGMRGAGKTSLGSSTAKVLGYEFLDADQVLEARLGRSIKEHIAEHGWDSFRDEEHAILASLLSETSVSDGKGRVVACGGGVVERAENRALLAAH 291
            +VIVGMRG GKT+LG   A+VLG++F+D DQ  E  L  ++ E I   GWD FR +E A L  LL++ S   G G V+ACGGG++E AE+R +L  H
Sbjct:  895 MVIVGMRGVGKTTLGQYAAEVLGFKFIDVDQYFEETLQTTVFEFINTWGWDQFRVKETAALKELLAKDS-QYGLGYVIACGGGIIETAESREVLKEH 990          
BLAST of mRNA_M-pyrifera_M_contig121152.4351.1 vs. uniprot
Match: A0A0P9EUM8_RHOGW (Shikimate kinase (Fragment) n=1 Tax=Rhodotorula graminis (strain WP1) TaxID=578459 RepID=A0A0P9EUM8_RHOGW)

HSP 1 Score: 85.9 bits (211), Expect = 1.510e-19
Identity = 50/95 (52.63%), Postives = 59/95 (62.11%), Query Frame = 1
Query:    1 IVIVGMRGAGKTSLGSSTAKVLGYEFLDADQVLEARLGRSIKEHIAEHGWDSFRDEEHAILASLLSETSVSDGKGRVVACGGGVVERAENRALLA 285
            IV++GMRG GKT+LG   A  L   F+DAD   +   G  I + +  HGW +FRD E  ILA LL E      +G VVACGGGVVER ENR LLA
Sbjct:    9 IVLIGMRGVGKTTLGLIAATSLRRSFIDADSAFQTLHG-PISQFVNTHGWSAFRDAETRILAQLLREHP----RGYVVACGGGVVERDENRELLA 98          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121152.4351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4BCY7_CHRCT5.020e-2252.003-phosphoshikimate 1-carboxyvinyltransferase (Frag... [more]
A0A7S0PXC9_9EUKA1.280e-2155.003-phosphoshikimate 1-carboxyvinyltransferase n=1 T... [more]
A0A0M0JNT7_9EUKA1.320e-2151.00Pentafunctional protein n=1 Tax=Chrysochromulina t... [more]
A0A0D7AWR8_9AGAR4.370e-2150.49Quinate repressor protein n=1 Tax=Cylindrobasidium... [more]
UPI001902ED592.080e-2050.00type I 3-dehydroquinase-domain-containing protein ... [more]
S2JQW8_MUCC12.140e-2050.52Pentafunctional AROM polypeptide n=2 Tax=Mucor Tax... [more]
A0A7S0IKK0_9EUKA5.230e-2052.58Quinate repressor protein n=1 Tax=Calcidiscus lept... [more]
S7TB75_9DELT5.430e-2048.42Shikimate kinase n=1 Tax=Desulfohalovibrio alkalit... [more]
A0A0B7N4X1_9FUNG5.430e-2050.52Pentafunctional AROM polypeptide n=5 Tax=Mucoracea... [more]
A0A0P9EUM8_RHOGW1.510e-1952.63Shikimate kinase (Fragment) n=1 Tax=Rhodotorula gr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121152contigM-pyrifera_M_contig121152:216..515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score88.2
Seed ortholog evalue2.3e-15
Seed eggNOG ortholog36080.S2JQW8
Preferred nameARO1
KEGG rclassRC00002,RC00078,RC00154,RC00206,RC00350,RC00847,RC00848
KEGG koko:K09484,ko:K13830
KEGG ReactionR01872,R02412,R02413,R03083,R03084,R03460
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003855,GO:0003856,GO:0003866,GO:0004764,GO:0004765,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016765,GO:0016772,GO:0016773,GO:0016829,GO:0016835,GO:0016836,GO:0016838,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046417,GO:0055114,GO:0071704,GO:1901576
EggNOG free text desc.The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis
EggNOG OGs1GS0B@112252,38GV4@33154,3NTWM@4751,COG0169@1,KOG0692@2759
EC1.1.1.24,1.1.1.25,2.5.1.19,2.7.1.71,4.2.1.10,4.2.3.4
COG Functional cat.E
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size300
Cds size285
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815730.7520313-UTR-M-pyrifera_M_contig121152:215..2301622815730.7520313-UTR-M-pyrifera_M_contig121152:215..230Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121152 216..230 +
1692277542.6222525-UTR-M-pyrifera_M_contig121152:215..2301692277542.6222525-UTR-M-pyrifera_M_contig121152:215..230Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121152 216..230 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815730.762526-CDS-M-pyrifera_M_contig121152:230..5151622815730.762526-CDS-M-pyrifera_M_contig121152:230..515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121152 231..515 +
1692277542.6329577-CDS-M-pyrifera_M_contig121152:230..5151692277542.6329577-CDS-M-pyrifera_M_contig121152:230..515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121152 231..515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121152.4351.1prot_M-pyrifera_M_contig121152.4351.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121152 231..515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121152.4351.1

>prot_M-pyrifera_M_contig121152.4351.1 ID=prot_M-pyrifera_M_contig121152.4351.1|Name=mRNA_M-pyrifera_M_contig121152.4351.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=95bp
MRGAGKTSLGSSTAKVLGYEFLDADQVLEARLGRSIKEHIAEHGWDSFRD
EEHAILASLLSETSVSDGKGRVVACGGGVVERAENRALLAAHWPV
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mRNA from alignment at M-pyrifera_M_contig121152:216..515+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121152.4351.1 ID=mRNA_M-pyrifera_M_contig121152.4351.1|Name=mRNA_M-pyrifera_M_contig121152.4351.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig121152:216..515+ (Macrocystis pyrifera P11B4 male)
ATTGTGATTGTCGGCATGAGGGGCGCAGGCAAGACGTCTCTCGGCAGCAG CACAGCCAAGGTGCTGGGTTACGAGTTCTTGGACGCCGACCAGGTGCTGG AGGCCAGGCTGGGCAGGAGCATCAAGGAGCACATTGCAGAGCATGGCTGG GACTCCTTCAGAGACGAGGAGCACGCCATTCTTGCCTCACTTCTCAGCGA GACCTCTGTTTCCGATGGCAAGGGCAGAGTAGTTGCCTGTGGTGGTGGCG TTGTGGAAAGGGCCGAGAACAGAGCCCTCCTGGCAGCACATTGGCCTGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121152:216..515+

>mRNA_M-pyrifera_M_contig121152.4351.1 ID=mRNA_M-pyrifera_M_contig121152.4351.1|Name=mRNA_M-pyrifera_M_contig121152.4351.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig121152:216..515+ (Macrocystis pyrifera P11B4 male)
ATGAGGGGCGCAGGCAAGACGTCTCTCGGCAGCAGCACAGCCAAGGTGCT
GGGTTACGAGTTCTTGGACGCCGACCAGGTGCTGGAGGCCAGGCTGGGCA
GGAGCATCAAGGAGCACATTGCAGAGCATGGCTGGGACTCCTTCAGAGAC
GAGGAGCACGCCATTCTTGCCTCACTTCTCAGCGAGACCTCTGTTTCCGA
TGGCAAGGGCAGAGTAGTTGCCTGTGGTGGTGGCGTTGTGGAAAGGGCCG
AGAACAGAGCCCTCCTGGCAGCACATTGGCCTGTGATGAGGGGCGCAGGC
AAGACGTCTCTCGGCAGCAGCACAGCCAAGGTGCTGGGTTACGAGTTCTT
GGACGCCGACCAGGTGCTGGAGGCCAGGCTGGGCAGGAGCATCAAGGAGC
ACATTGCAGAGCATGGCTGGGACTCCTTCAGAGACGAGGAGCACGCCATT
CTTGCCTCACTTCTCAGCGAGACCTCTGTTTCCGATGGCAAGGGCAGAGT
AGTTGCCTGTGGTGGTGGCGTTGTGGAAAGGGCCGAGAACAGAGCCCTCC
TGGCAGCACATTGGCCTGTG
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