mRNA_M-pyrifera_M_contig121141.4348.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121141.4348.1
Unique NamemRNA_M-pyrifera_M_contig121141.4348.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121141.4348.1 vs. uniprot
Match: A0A7Y1ZTR1_9ACTN (Uncharacterized protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y1ZTR1_9ACTN)

HSP 1 Score: 55.8 bits (133), Expect = 2.110e-6
Identity = 48/145 (33.10%), Postives = 64/145 (44.14%), Query Frame = 1 
Query:    1 MARFSDGNDHAERRDTVSRLVGSLPVLPLLNHTRDETEARLAYATWLDSGSMTLDAMPYFARRRPVTSLGQFLLPAVDDVDPIVDDVAGLVRALAPSASSDEVFRTEGDAAANRLLGHFGDDADA-IAAISILFQTHDATAALIG 432
            MARFS    H+ RR  V      L V P     RD + A L       +     DA+       PV    + +  A+   +P +  V   VR++A      +      D A  RLL  FG D  A +A +S+L+QTHDATAAL G
Sbjct:   42 MARFSPPETHSHRRAAVDAAAAELTVYPFAAAARDRSAAILGA-----TDDARFDAIERLGLAVPV----EVVALALGVPEPDLVGVRHDVRSIAEVIGRQQRSSPASDHATARLLQRFGGDTPAGVATVSLLYQTHDATAALFG 177
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121141.4348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7Y1ZTR1_9ACTN2.110e-633.10Uncharacterized protein n=1 Tax=Ilumatobacter sp. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121141contigM-pyrifera_M_contig121141:39..533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size438
Cds size438
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815730.6043897-CDS-M-pyrifera_M_contig121141:38..3531622815730.6043897-CDS-M-pyrifera_M_contig121141:38..353Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121141 39..353 -
1692277542.58153-CDS-M-pyrifera_M_contig121141:38..3531692277542.58153-CDS-M-pyrifera_M_contig121141:38..353Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121141 39..353 -
1622815730.6213136-CDS-M-pyrifera_M_contig121141:410..5331622815730.6213136-CDS-M-pyrifera_M_contig121141:410..533Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121141 411..533 -
1692277542.5918546-CDS-M-pyrifera_M_contig121141:410..5331692277542.5918546-CDS-M-pyrifera_M_contig121141:410..533Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121141 411..533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121141.4348.1prot_M-pyrifera_M_contig121141.4348.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121141 39..533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121141.4348.1

>prot_M-pyrifera_M_contig121141.4348.1 ID=prot_M-pyrifera_M_contig121141.4348.1|Name=mRNA_M-pyrifera_M_contig121141.4348.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
MARFSDGNDHAERRDTVSRLVGSLPVLPLLNHTRDETEARLAYATWLDSG
SMTLDAMPYFARRRPVTSLGQFLLPAVDDVDPIVDDVAGLVRALAPSASS
DEVFRTEGDAAANRLLGHFGDDADAIAAISILFQTHDATAALIGQA
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mRNA from alignment at M-pyrifera_M_contig121141:39..533-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121141.4348.1 ID=mRNA_M-pyrifera_M_contig121141.4348.1|Name=mRNA_M-pyrifera_M_contig121141.4348.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=495bp|location=Sequence derived from alignment at M-pyrifera_M_contig121141:39..533- (Macrocystis pyrifera P11B4 male)
ATGGCCCGGTTCTCCGACGGCAACGATCATGCCGAACGTCGTGACACCGT
GAGCCGCCTCGTCGGCTCGCTGCCGGTGCTGCCCCTGTTGAACCACACCC
GAGACGAGACCGAGGCCCGACTCGTCGAACTGGCCGACGGCTGGTCCGCC
CGACGCTCGGTCGCCGACGACGGCACCCAGGCGTACGCGACATGGCTCGA
CTCGGGGTCCATGACCCTCGATGCGATGCCGTACTTCGCTCGACGGCGCC
CGGTCACGTCGCTGGGCCAGTTCCTCCTGCCGGCGGTCGACGATGTCGAC
CCGATCGTCGACGACGTCGCCGGGCTCGTTCGCGCGTTGGCTCCCTCGGC
ATCGAGCGACGAAGTGTTCCGCACCGAGGGCGACGCCGCAGCGAACCGCT
TGCTCGGACACTTCGGCGACGACGCCGATGCCATCGCGGCGATCTCGATC
CTGTTCCAGACCCACGATGCGACCGCTGCGCTGATCGGGCAGGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121141:39..533-

>mRNA_M-pyrifera_M_contig121141.4348.1 ID=mRNA_M-pyrifera_M_contig121141.4348.1|Name=mRNA_M-pyrifera_M_contig121141.4348.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig121141:39..533- (Macrocystis pyrifera P11B4 male)
ATGGCCCGGTTCTCCGACGGCAACGATCATGCCGAACGTCGTGACACCGT
GAGCCGCCTCGTCGGCTCGCTGCCGGTGCTGCCCCTGTTGAACCACACCC
GAGACGAGACCGAGGCCCGACTCATGGCCCGGTTCTCCGACGGCAACGAT
CATGCCGAACGTCGTGACACCGTGAGCCGCCTCGTCGGCTCGCTGCCGGT
GCTGCCCCTGTTGAACCACACCCGAGACGAGACCGAGGCCCGACTCGCGT
ACGCGACATGGCTCGACTCGGGGTCCATGACCCTCGATGCGATGCCGTAC
TTCGCTCGACGGCGCCCGGTCACGTCGCTGGGCCAGTTCCTCCTGCCGGC
GGTCGACGATGTCGACCCGATCGTCGACGACGTCGCCGGGCTCGTTCGCG
CGTTGGCTCCCTCGGCATCGAGCGACGAAGTGTTCCGCACCGAGGGCGAC
GCCGCAGCGAACCGCTTGCTCGGACACTTCGGCGACGACGCCGATGCCAT
CGCGGCGATCTCGATCCTGTTCCAGACCCACGATGCGACCGCTGCGCTGA
TCGGGCAGGCGGCGTACGCGACATGGCTCGACTCGGGGTCCATGACCCTC
GATGCGATGCCGTACTTCGCTCGACGGCGCCCGGTCACGTCGCTGGGCCA
GTTCCTCCTGCCGGCGGTCGACGATGTCGACCCGATCGTCGACGACGTCG
CCGGGCTCGTTCGCGCGTTGGCTCCCTCGGCATCGAGCGACGAAGTGTTC
CGCACCGAGGGCGACGCCGCAGCGAACCGCTTGCTCGGACACTTCGGCGA
CGACGCCGATGCCATCGCGGCGATCTCGATCCTGTTCCAGACCCACGATG
CGACCGCTGCGCTGATCGGGCAGGCG
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