mRNA_M-pyrifera_M_contig121043.4337.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121043.4337.1
Unique NamemRNA_M-pyrifera_M_contig121043.4337.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121043.4337.1 vs. uniprot
Match: A0A6B2L0Y4_9EUKA (SUEL-type lectin domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L0Y4_9EUKA)

HSP 1 Score: 85.5 bits (210), Expect = 5.570e-18
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:   16 SCDAQNVTTYVKAHCIGQHSCTTLSYPTFGDPCYGTFKQLVIQARCSDGKGGSATP 183
            +CDA N T Y+K  CIG++SC+ +SYPTFGDPCYGT K+LVIQA CS G GG+  P
Sbjct:  428 ACDAPNATQYIKEQCIGKNSCSVVSYPTFGDPCYGTEKRLVIQATCSGGAGGNGLP 483
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BLAST of mRNA_M-pyrifera_M_contig121043.4337.1 vs. uniprot
Match: A9V515_MONBE (Predicted protein (Fragment) n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V515_MONBE)

HSP 1 Score: 80.1 bits (196), Expect = 4.430e-16
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 YQHNASCDAQNVTTYVKAHCIGQHSCTTLSYPTFGDPCYGTFKQLVIQARCSDGKG 168
            YQH  +CDA NVT+YV+  C+GQ  CT +S  TFGDPCYGT+K LVIQA CS G G
Sbjct:  452 YQHG-TCDASNVTSYVQKACVGQRECTIVSDATFGDPCYGTYKDLVIQATCSQGPG 506
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BLAST of mRNA_M-pyrifera_M_contig121043.4337.1 vs. uniprot
Match: F2UIZ0_SALR5 (SUEL-type lectin domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UIZ0_SALR5)

HSP 1 Score: 75.1 bits (183), Expect = 2.560e-14
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   16 SCDAQNVTTYVKAHCIGQHSCTTLSYPTFGDPCYGTFKQLVIQARCSDGKGGSATP 183
            +CDA N T  V A C G+ +CT  SYPTFGDPCYG +K LV+QA C+   GG A P
Sbjct:  486 ACDASNTTAIVTAMCKGKRACTVASYPTFGDPCYGVYKDLVVQAACTRDSGGFARP 541
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BLAST of mRNA_M-pyrifera_M_contig121043.4337.1 vs. uniprot
Match: C1BZ20_ESOLU (Rhamnose-binding lectin n=4 Tax=Esox lucius TaxID=8010 RepID=C1BZ20_ESOLU)

HSP 1 Score: 50.1 bits (118), Expect = 1.630e-5
Identity = 23/49 (46.94%), Postives = 27/49 (55.10%), Query Frame = 1 
Query:   16 SCDAQNVTTYVKAHCIGQHSCTTLSYPTFGDPCYGTFKQLVIQARCSDG 162
            +C    V   VK  C G+  CT    PTFGDPCYGT+K L +  RC  G
Sbjct:  259 NCLQPKVLEVVKKWCEGKSRCTVGHDPTFGDPCYGTYKYLEVSYRCLGG 307
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BLAST of mRNA_M-pyrifera_M_contig121043.4337.1 vs. uniprot
Match: A0A1V9Y4W7_9STRA (Uncharacterized protein n=2 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y4W7_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 4.450e-5
Identity = 26/58 (44.83%), Postives = 33/58 (56.90%), Query Frame = 1 
Query:   16 SCDAQNVTTYVKAHCIGQHSCTTLSYP-TFGDPCYGTFKQLVIQARCSDGK--GGSAT 180
            SC+AQ     V   C G+ +C   +   TFGDPCYGT KQL + A+C  G   GGS +
Sbjct: 1136 SCNAQTTAPIVNVACNGKATCVVPAQSSTFGDPCYGTSKQLSVTAQCVPGNIVGGSVS 1193
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BLAST of mRNA_M-pyrifera_M_contig121043.4337.1 vs. uniprot
Match: T0QEN7_SAPDV (SUEL-type lectin domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QEN7_SAPDV)

HSP 1 Score: 47.0 bits (110), Expect = 6.790e-5
Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = 1 
Query:   19 CDAQNVTTYVKAHCIGQHSC-TTLSYPTFGDPCYGTFKQLVIQARCSD 159
            CDA      V++ CIG  +C   +    FGDPC+GT+KQL +  +C D
Sbjct:   76 CDAATSVAVVQSACIGNKACDVAVDSAVFGDPCFGTYKQLDVALQCVD 123
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121043.4337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6B2L0Y4_9EUKA5.570e-1864.29SUEL-type lectin domain-containing protein n=1 Tax... [more]
A9V515_MONBE4.430e-1664.29Predicted protein (Fragment) n=1 Tax=Monosiga brev... [more]
F2UIZ0_SALR52.560e-1457.14SUEL-type lectin domain-containing protein n=1 Tax... [more]
C1BZ20_ESOLU1.630e-546.94Rhamnose-binding lectin n=4 Tax=Esox lucius TaxID=... [more]
A0A1V9Y4W7_9STRA4.450e-544.83Uncharacterized protein n=2 Tax=Achlya hypogyna Ta... [more]
T0QEN7_SAPDV6.790e-541.67SUEL-type lectin domain-containing protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121043contigM-pyrifera_M_contig121043:2..187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue3.1e-13
Seed eggNOG ortholog81824.XP_001747912.1
KEGG koko:K14297
KEGG TC1.I.1
KEGG Pathwayko03013,ko05164,map03013,map05164
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
EggNOG free text desc.beta-galactosidase activity
EggNOG OGsCOG1874@1,KOG0496@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815729.9530067-CDS-M-pyrifera_M_contig121043:1..1871622815729.9530067-CDS-M-pyrifera_M_contig121043:1..187Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121043 2..187 +
1692277542.2357328-CDS-M-pyrifera_M_contig121043:1..1871692277542.2357328-CDS-M-pyrifera_M_contig121043:1..187Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121043 2..187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121043.4337.1prot_M-pyrifera_M_contig121043.4337.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121043 2..187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121043.4337.1

>prot_M-pyrifera_M_contig121043.4337.1 ID=prot_M-pyrifera_M_contig121043.4337.1|Name=mRNA_M-pyrifera_M_contig121043.4337.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=62bp
YQHNASCDAQNVTTYVKAHCIGQHSCTTLSYPTFGDPCYGTFKQLVIQAR
CSDGKGGSATPS
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mRNA from alignment at M-pyrifera_M_contig121043:2..187+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121043.4337.1 ID=mRNA_M-pyrifera_M_contig121043.4337.1|Name=mRNA_M-pyrifera_M_contig121043.4337.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=186bp|location=Sequence derived from alignment at M-pyrifera_M_contig121043:2..187+ (Macrocystis pyrifera P11B4 male)
TACCAGCATAATGCTTCTTGTGATGCTCAAAACGTCACCACTTACGTCAA
AGCACATTGCATTGGACAACACTCTTGCACCACACTCTCCTACCCAACAT
TTGGTGATCCATGCTACGGAACATTCAAGCAATTAGTGATTCAAGCACGG
TGCTCTGATGGAAAAGGTGGCTCTGCTACTCCATCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121043:2..187+

>mRNA_M-pyrifera_M_contig121043.4337.1 ID=mRNA_M-pyrifera_M_contig121043.4337.1|Name=mRNA_M-pyrifera_M_contig121043.4337.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig121043:2..187+ (Macrocystis pyrifera P11B4 male)
TACCAGCATAATGCTTCTTGTGATGCTCAAAACGTCACCACTTACGTCAA
AGCACATTGCATTGGACAACACTCTTGCACCACACTCTCCTACCCAACAT
TTGGTGATCCATGCTACGGAACATTCAAGCAATTAGTGATTCAAGCACGG
TGCTCTGATGGAAAAGGTGGCTCTGCTACTCCATCTTACCAGCATAATGC
TTCTTGTGATGCTCAAAACGTCACCACTTACGTCAAAGCACATTGCATTG
GACAACACTCTTGCACCACACTCTCCTACCCAACATTTGGTGATCCATGC
TACGGAACATTCAAGCAATTAGTGATTCAAGCACGGTGCTCTGATGGAAA
AGGTGGCTCTGCTACTCCATCT
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