mRNA_M-pyrifera_M_contig121041.4336.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121041.4336.1
Unique NamemRNA_M-pyrifera_M_contig121041.4336.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121041.4336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121041contigM-pyrifera_M_contig121041:152..499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score84.3
Seed ortholog evalue4e-14
Seed eggNOG ortholog946362.XP_004995349.1
Hectar predicted targeting categoryother localisation
EggNOG OGs294VB@1,2RBSW@2759,39Y68@33154
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815729.9249363-CDS-M-pyrifera_M_contig121041:151..4991622815729.9249363-CDS-M-pyrifera_M_contig121041:151..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121041 152..499 -
1692277542.2255945-CDS-M-pyrifera_M_contig121041:151..4991692277542.2255945-CDS-M-pyrifera_M_contig121041:151..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121041 152..499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121041.4336.1prot_M-pyrifera_M_contig121041.4336.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121041 152..499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121041.4336.1

>prot_M-pyrifera_M_contig121041.4336.1 ID=prot_M-pyrifera_M_contig121041.4336.1|Name=mRNA_M-pyrifera_M_contig121041.4336.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
VLLLPGTYFFGRTQSITPSDAFTLIASADPVNPAVMSGSVSVTNLSWQEE
GGGVYSAGLPATIDLQHASSGLWPLFVDSTPYVLARWPNANPAYDFRPVG
YVSPVKYEPDESKIAP
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mRNA from alignment at M-pyrifera_M_contig121041:152..499-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121041.4336.1 ID=mRNA_M-pyrifera_M_contig121041.4336.1|Name=mRNA_M-pyrifera_M_contig121041.4336.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig121041:152..499- (Macrocystis pyrifera P11B4 male)
GTGCTCCTTCTCCCTGGCACATATTTCTTTGGACGAACTCAATCCATTAC
TCCTTCCGACGCGTTTACACTGATTGCATCTGCTGATCCAGTAAATCCTG
CCGTCATGAGTGGGAGTGTTAGTGTAACTAACTTGTCGTGGCAGGAAGAG
GGTGGTGGGGTGTATAGTGCTGGGCTTCCTGCAACGATTGATTTACAGCA
CGCGTCAAGTGGACTGTGGCCCCTTTTTGTGGATTCTACACCTTATGTCC
TTGCAAGGTGGCCAAATGCAAACCCTGCCTATGATTTCCGTCCTGTTGGT
TACGTGTCTCCGGTCAAGTATGAACCAGATGAATCTAAAATTGCACCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121041:152..499-

>mRNA_M-pyrifera_M_contig121041.4336.1 ID=mRNA_M-pyrifera_M_contig121041.4336.1|Name=mRNA_M-pyrifera_M_contig121041.4336.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig121041:152..499- (Macrocystis pyrifera P11B4 male)
GTGCTCCTTCTCCCTGGCACATATTTCTTTGGACGAACTCAATCCATTAC
TCCTTCCGACGCGTTTACACTGATTGCATCTGCTGATCCAGTAAATCCTG
CCGTCATGAGTGGGAGTGTTAGTGTAACTAACTTGTCGTGGCAGGAAGAG
GGTGGTGGGGTGTATAGTGCTGGGCTTCCTGCAACGATTGATTTACAGCA
CGCGTCAAGTGGACTGTGGCCCCTTTTTGTGGATTCTACACCTTATGTCC
TTGCAAGGTGGCCAAATGCAAACCCTGCCTATGATTTCCGTCCTGTTGGT
TACGTGTCTCCGGTCAAGTATGAACCAGATGAATCTAAAATTGCACCAGT
GCTCCTTCTCCCTGGCACATATTTCTTTGGACGAACTCAATCCATTACTC
CTTCCGACGCGTTTACACTGATTGCATCTGCTGATCCAGTAAATCCTGCC
GTCATGAGTGGGAGTGTTAGTGTAACTAACTTGTCGTGGCAGGAAGAGGG
TGGTGGGGTGTATAGTGCTGGGCTTCCTGCAACGATTGATTTACAGCACG
CGTCAAGTGGACTGTGGCCCCTTTTTGTGGATTCTACACCTTATGTCCTT
GCAAGGTGGCCAAATGCAAACCCTGCCTATGATTTCCGTCCTGTTGGTTA
CGTGTCTCCGGTCAAGTATGAACCAGATGAATCTAAAATTGCACCA
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