mRNA_M-pyrifera_M_contig121029.4332.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121029.4332.1
Unique NamemRNA_M-pyrifera_M_contig121029.4332.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121029.4332.1 vs. uniprot
Match: A0A5A8BHT0_9PLAN (Uncharacterized protein n=3 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A5A8BHT0_9PLAN)

HSP 1 Score: 212 bits (540), Expect = 9.250e-69
Identity = 105/110 (95.45%), Postives = 105/110 (95.45%), Query Frame = 1 
Query:    1 MLNESIPRSDMEQISTEGITFLIRRWVPLTPLIFVIVFVGVNSKHVGGWNWETVGQFVTPLVFGLCLSFLIRYLVSDFADVVCVNNSHIRFEKDGQTETMPLSNIEELRS 330
            MLNESIPRSDMEQISTEG TFLIRRWVPLTPLIFVIVFVGVNSKHV GWNWETVGQFVTPLVFGLCLSFLIRYLVSDFADVV VNNSHIRFEKDGQ ETM LSNIEELRS
Sbjct:    1 MLNESIPRSDMEQISTEGTTFLIRRWVPLTPLIFVIVFVGVNSKHVWGWNWETVGQFVTPLVFGLCLSFLIRYLVSDFADVVWVNNSHIRFEKDGQAETMLLSNIEELRS 110
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BLAST of mRNA_M-pyrifera_M_contig121029.4332.1 vs. uniprot
Match: A0A518FTT3_9PLAN (Uncharacterized protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FTT3_9PLAN)

HSP 1 Score: 132 bits (331), Expect = 5.430e-37
Identity = 64/110 (58.18%), Postives = 81/110 (73.64%), Query Frame = 1 
Query:    1 MLNESIPRSDMEQISTEGITFLIRRWVPLTPLIFVIVFVGVNSKHVGGWNWETVGQFVTPLVFGLCLSFLIRYLVSDFADVVCVNNSHIRFEKDGQTETMPLSNIEELRS 330
            M  +S P S+MEQIST G TFLIR+W+PLTPLIF I+   + SK +  W++ET G+    ++ GLC   L+RY VS FADVV +N+S IRF+KDGQT T PL+NIEELRS
Sbjct:    1 MQQDSRPESEMEQISTGGATFLIRKWLPLTPLIFCILISFLTSKQMWRWDFETAGRLAIAVIAGLCFYGLVRYFVSGFADVVWINDSQIRFKKDGQTATTPLTNIEELRS 110
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BLAST of mRNA_M-pyrifera_M_contig121029.4332.1 vs. uniprot
Match: A0A518AAP4_9PLAN (Uncharacterized protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518AAP4_9PLAN)

HSP 1 Score: 100 bits (248), Expect = 2.040e-24
Identity = 49/110 (44.55%), Postives = 71/110 (64.55%), Query Frame = 1 
Query:    1 MLNESIPRSDMEQISTEGITFLIRRWVPLTPLIFVIVFVGVNSKHVGGWNWETVGQFVTPLVFGLCLSFLIRYLVSDFADVVCVNNSHIRFEKDGQTETMPLSNIEELRS 330
            M  +S P  +MEQIS++  TFL ++W+PLTPL+F I+   V S  +  W+ E+    V  ++ G CLS L R+LVS F D V +++S IRF+  G+ ET  L N+EEL+S
Sbjct:    1 MQQDSRPELEMEQISSDSATFLCKKWLPLTPLLFFILISFVTSGRMWRWDLESARDLVVAVIIGGCLSALFRFLVSGFVDRVWMSDSQIRFQTAGRQETTSLKNVEELKS 110
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BLAST of mRNA_M-pyrifera_M_contig121029.4332.1 vs. uniprot
Match: A0A3D3QZH4_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A3D3QZH4_9PLAN)

HSP 1 Score: 89.7 bits (221), Expect = 2.850e-20
Identity = 47/110 (42.73%), Postives = 66/110 (60.00%), Query Frame = 1 
Query:    1 MLNESIPRSDMEQISTEGITFLIRRWVPLTPLIFVIVFVGVNSKHVGGWNWETVGQFVTPLVFGLCLSFLIRYLVSDFADVVCVNNSHIRFEKDGQTETMPLSNIEELRS 330
            M  ES P +++  IS    TF +++W P+  L F +    ++SK V   ++E +   V  +   L   FL RYLVS FAD V +N + IRF+KDGQ ET PL+NIEEL+S
Sbjct:    1 MSQESPPLTELTSISAGFNTFTLKKWFPIATLCFWLTLAFLSSKTVSDGDYEKIRSIVLGIFMALGFFFLARYLVSGFADEVWMNETCIRFQKDGQQETTPLTNIEELKS 110
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121029.4332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A5A8BHT0_9PLAN9.250e-6995.45Uncharacterized protein n=3 Tax=Gimesia chilikensi... [more]
A0A518FTT3_9PLAN5.430e-3758.18Uncharacterized protein n=2 Tax=Gimesia panareensi... [more]
A0A518AAP4_9PLAN2.040e-2444.55Uncharacterized protein n=2 Tax=Gimesia panareensi... [more]
A0A3D3QZH4_9PLAN2.850e-2042.73Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121029contigM-pyrifera_M_contig121029:186..515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size330
Cds size330
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815729.7118757-CDS-M-pyrifera_M_contig121029:185..5151622815729.7118757-CDS-M-pyrifera_M_contig121029:185..515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121029 186..515 +
1692277542.1146102-CDS-M-pyrifera_M_contig121029:185..5151692277542.1146102-CDS-M-pyrifera_M_contig121029:185..515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121029 186..515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121029.4332.1prot_M-pyrifera_M_contig121029.4332.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121029 186..515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121029.4332.1

>prot_M-pyrifera_M_contig121029.4332.1 ID=prot_M-pyrifera_M_contig121029.4332.1|Name=mRNA_M-pyrifera_M_contig121029.4332.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
MLNESIPRSDMEQISTEGITFLIRRWVPLTPLIFVIVFVGVNSKHVGGWN
WETVGQFVTPLVFGLCLSFLIRYLVSDFADVVCVNNSHIRFEKDGQTETM
PLSNIEELRS
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mRNA from alignment at M-pyrifera_M_contig121029:186..515+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121029.4332.1 ID=mRNA_M-pyrifera_M_contig121029.4332.1|Name=mRNA_M-pyrifera_M_contig121029.4332.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig121029:186..515+ (Macrocystis pyrifera P11B4 male)
ATGCTTAATGAATCCATTCCACGATCAGACATGGAGCAGATCTCCACTGA
AGGCATAACGTTTCTGATCAGAAGGTGGGTACCGCTGACGCCGCTCATCT
TTGTCATTGTTTTCGTCGGTGTGAACTCGAAGCATGTCGGGGGCTGGAAT
TGGGAAACCGTCGGGCAGTTTGTGACACCATTAGTTTTCGGACTCTGTTT
ATCATTTTTGATCCGGTATCTGGTCTCCGATTTTGCAGACGTAGTCTGCG
TCAATAACAGTCACATTCGGTTTGAAAAGGATGGTCAGACTGAAACAATG
CCGCTAAGTAACATCGAAGAGTTACGAAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121029:186..515+

>mRNA_M-pyrifera_M_contig121029.4332.1 ID=mRNA_M-pyrifera_M_contig121029.4332.1|Name=mRNA_M-pyrifera_M_contig121029.4332.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig121029:186..515+ (Macrocystis pyrifera P11B4 male)
ATGCTTAATGAATCCATTCCACGATCAGACATGGAGCAGATCTCCACTGA
AGGCATAACGTTTCTGATCAGAAGGTGGGTACCGCTGACGCCGCTCATCT
TTGTCATTGTTTTCGTCGGTGTGAACTCGAAGCATGTCGGGGGCTGGAAT
TGGGAAACCGTCGGGCAGTTTGTGACACCATTAGTTTTCGGACTCTGTTT
ATCATTTTTGATCCGGTATCTGGTCTCCGATTTTGCAGACGTAGTCTGCG
TCAATAACAGTCACATTCGGTTTGAAAAGGATGGTCAGACTGAAACAATG
CCGCTAAGTAACATCGAAGAGTTACGAAGCATGCTTAATGAATCCATTCC
ACGATCAGACATGGAGCAGATCTCCACTGAAGGCATAACGTTTCTGATCA
GAAGGTGGGTACCGCTGACGCCGCTCATCTTTGTCATTGTTTTCGTCGGT
GTGAACTCGAAGCATGTCGGGGGCTGGAATTGGGAAACCGTCGGGCAGTT
TGTGACACCATTAGTTTTCGGACTCTGTTTATCATTTTTGATCCGGTATC
TGGTCTCCGATTTTGCAGACGTAGTCTGCGTCAATAACAGTCACATTCGG
TTTGAAAAGGATGGTCAGACTGAAACAATGCCGCTAAGTAACATCGAAGA
GTTACGAAGC
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