mRNA_M-pyrifera_M_contig121024.4331.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121024.4331.1
Unique NamemRNA_M-pyrifera_M_contig121024.4331.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121024.4331.1 vs. uniprot
Match: A0A525DCI0_9DELT (Uncharacterized protein n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A525DCI0_9DELT)

HSP 1 Score: 95.9 bits (237), Expect = 8.920e-20
Identity = 68/175 (38.86%), Postives = 91/175 (52.00%), Query Frame = 1
Query:   46 EIGPDDFRISVIGDDGDPDRDAFRPGVVANDGTGEFVAVFRGDQ----LADQDFEIHARRI-AADGSLQGSQVMVSDLFGTDWQ-----AGDPVITFNPVTSQYLVVFHGRESDSGLAVGEAEVFAQLLSPQL-VEQGVDDRQITTTPTRG-----AFRPTVATNTADGTYLVVW 522
            EIG +DF+IS +G DGDPD DA+RP V  N    E++ V+ GD     L D + EI  +RI AA G   G+        GTD       A  P + +N V  +YLVV+ G      LA+ E E+F Q ++     E G +D +I+     G      +RP VA N+AD  YLVVW
Sbjct:  236 EIGTNDFQISDMGTDGDPDFDAYRPAVAYNSVNREYLVVWEGDDNTGLLGDYEPEIFGQRINAATGEEVGANDFRISSMGTDDDQYYEGAHYPDVVYNSVNDEYLVVWEGNPGKGSLALNEYEIFGQRINGATGAEVGTNDFRISDMGPDGEGKYGGYRPAVAFNSADNEYLVVW 410          
BLAST of mRNA_M-pyrifera_M_contig121024.4331.1 vs. uniprot
Match: A0A8J3FL26_9FLAO (Por_Secre_tail domain-containing protein n=1 Tax=Yeosuana aromativorans TaxID=288019 RepID=A0A8J3FL26_9FLAO)

HSP 1 Score: 91.7 bits (226), Expect = 2.400e-18
Identity = 65/187 (34.76%), Postives = 98/187 (52.41%), Query Frame = 1
Query:    1 NENEIYGQLIDGAGNEIGPDDFRISVIGDDGDPDRDAFRPGVVANDGTGEFVAVFRGDQLADQDFEIHARRI-AADGSLQGSQVMVSDLFGTDWQAGD----PVITFNPVTSQYLVVFHGRESDSGLAVGEAEVFAQLLSPQLVEQGVDDRQITTT-----PTRGAFRPTVATNTADGTYLVVWDAD 531
            NE EIYGQ IDG GNE+G +DFRIS +G DGD    A  P V  N    EF  V++G+   D + EI  +R+ A+ G+L GS   +SD+ GT+         P +  +   ++YLVV+ G +    +   + E++ Q +S   VE G +D +I+        +  A  P +  N  D  +L+VW  +
Sbjct:   72 NEFEIYGQFIDGDGNEVGANDFRISFLGTDGDTAFRAEDPDVTYNSIDNEFFVVWKGETSVDGENEIFGQRVDASTGNLIGSNFRISDM-GTEGDTSTGAFLPKVDCSKTNNEYLVVWEGDD----VINNKIEIYGQKISNLGVEIGSNDFKISNQLPIDDASFDARYPNLVWNEIDNDFLIVWQGE 253          
BLAST of mRNA_M-pyrifera_M_contig121024.4331.1 vs. uniprot
Match: A0A3N5LL11_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A3N5LL11_9ACTN)

HSP 1 Score: 90.1 bits (222), Expect = 3.540e-18
Identity = 68/170 (40.00%), Postives = 91/170 (53.53%), Query Frame = 1
Query:   46 EIGPDDFRISVIGDDGDPDRDAFRPGVVANDGTGEFVAVFRG--DQLADQDFEIHARRIAADGSLQGSQVMVSDLFGTDWQAGDPVITFNPVTSQYLVVFHGRESDSGLAVGEAEVFAQLLSPQLV-EQGVDDRQITTT-----PTRGAFRPTVATNTADGTYLVVWDAD 531
            E+GP+DFRIS  G DGD    A +  V  N     F+ V+RG  D LA  + EI AR ++ +GS  G Q+ +SD+ G D  A  P + ++   +Q+LVV+ G E+      GE EV+ Q LS     E GVDD QI+       PT GA  P VA N  +  + VVW  D
Sbjct:   25 EVGPNDFRISEAGPDGDAAYGAEQADVAFNSVDDVFLVVWRGTDDVLAPGEHEIFARLVSREGSPIGEQLRISDM-GID--ASSPAVAYDEAANQFLVVWAGDET------GETEVYGQRLSGTGAGEVGVDDFQISQVGTDGIPTAGAQSPDVAYNPNNNRWFVVWAGD 185          
BLAST of mRNA_M-pyrifera_M_contig121024.4331.1 vs. uniprot
Match: A0A098LM00_9FLAO (Cadherin domain-containing protein n=6 Tax=Jejuia pallidilutea TaxID=504487 RepID=A0A098LM00_9FLAO)

HSP 1 Score: 87.4 bits (215), Expect = 8.670e-17
Identity = 56/164 (34.15%), Postives = 85/164 (51.83%), Query Frame = 1
Query:   61 DFRISVIGDDGDPDRDAFRPGVVANDGTGEFVAVFRGDQLADQDFEIHARRI-AADGSLQGSQVMVSDLFG--TDWQAGDPVITFNPVTSQYLVVFHGRESDSGLAVGEAEVFAQLLSPQLVEQG----VDDRQITTTPTRGAFRPTVATNTADGTYLVVWDAD 531
            +FRISV+G DGD   DA  P +  N    EF+ V+ GD       EI  +R+ A+DG+L G+Q ++S+      D+ A D  + +N V +QYLVV+   ++  G+   E E+F ++++      G    V D   +   T  A  P VA +     +LV WDAD
Sbjct:  550 EFRISVMGTDGDDALDASNPDLAYNSTDDEFLVVWHGDNTVSGKNEIFGQRVNASDGTLLGAQFLISNNVSGNADFDASDSRVAYNSVNNQYLVVWESDDNTGGMIDNETEIFGRIVNANGTLSGSQIRVSDVGGSGNTTYTATDPDVAYSATSNVFLVTWDAD 713          
BLAST of mRNA_M-pyrifera_M_contig121024.4331.1 vs. uniprot
Match: M5T5K2_9BACT (Extracellular nuclease n=2 Tax=Rhodopirellula sp. SWK7 TaxID=595460 RepID=M5T5K2_9BACT)

HSP 1 Score: 87.0 bits (214), Expect = 1.160e-16
Identity = 66/191 (34.55%), Postives = 92/191 (48.17%), Query Frame = 1
Query:    4 ENEIYGQLIDGAGNEIGPDDFRISVIGDDGDPDRDAFRPGVVANDGTGEFVAVFR------GDQLADQDFEIHARRIAADG--------SLQGSQVMVSDLFGTDWQAGDPVITFNPVTSQYLVVFHGRESDSGLAVGEAEVFAQLLSPQLVEQGVDDRQITTTPTRG--AFRPTVATNTADGTYLVVWDA 528
            E EI+GQLID  G EIG +DFRIS  G  GDP+ DA  P V  N  + E++  +       G Q+ + D  I  +R+ ++G         +  +  +   L G   +   P +  N  T  YLV +  R      A+G A+VF QL+  +  E G +D QI +    G  A +PT A NT D  Y V W A
Sbjct:  160 EQEIFGQLIDHRGQEIGENDFRISDAGGSGDPNVDANTPSVAWNSVSNEYLVAWNSNDSDAGLQMTESD--IFGQRLDSEGVSIGVNDWRISNTSDLGGSLIGPSLR-NRPDVVVNSATGDYLVTWRSRTLSEQNALG-ADVFGQLIDVEGNEIGTNDFQINSVSDTGVVATQPTAAYNTRDNEYFVTWSA 346          
BLAST of mRNA_M-pyrifera_M_contig121024.4331.1 vs. uniprot
Match: A0A537YR06_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537YR06_9ACTN)

HSP 1 Score: 85.9 bits (211), Expect = 2.590e-16
Identity = 49/128 (38.28%), Postives = 76/128 (59.38%), Query Frame = 1
Query:    1 NENEIYGQLIDGAGNEIGPDDFRISVIGDDGDPDRDAFRPGVVANDGTGEFVAVFRGDQ----LADQDFEIHARRIAADGSLQGSQ-VMVSDLF---GTDWQAGDPVITFNPVTSQYLVVFHGRESDS 360
            NE E++GQL+   G +IGPDDFRIS +G DGD   +AFRP +  +    +++ V+ GD+    L D +FEI+ + +AADG+  G+    +SD+      ++ A  P + +N VT  YLV +   E +S
Sbjct:  297 NEREVFGQLLAADGTQIGPDDFRISDVGVDGDAKSNAFRPRMAYDPFGNQYLVVWHGDEIISPLIDNEFEIYGQYLAADGAQIGNNDFRISDIQPDGNKEFSANRPQVAYNTVTCDYLVSYFSGEPNS 424          
BLAST of mRNA_M-pyrifera_M_contig121024.4331.1 vs. uniprot
Match: A0A090VWK3_9FLAO (Cadherin domain-containing protein n=1 Tax=Jejuia pallidilutea TaxID=504487 RepID=A0A090VWK3_9FLAO)

HSP 1 Score: 82.8 bits (203), Expect = 3.030e-15
Identity = 57/169 (33.73%), Postives = 87/169 (51.48%), Query Frame = 1
Query:   46 EIGPDDFRISVIGDDGDPDRDAFRPGVVANDGTGEFVAVFRGDQLADQDFEIHARRI-AADGSLQGSQVMVSDLFGT---DWQAGDPVITFNPVTSQYLVVFHGRESDSGLAVGEAEVFAQLLSPQLVEQGVDDRQITTTPTRG----AFRPTVATNTADGTYLVVWDA 528
            EIG +DFRIS +G DGDP+ D  +  +  N  T +++ V+ GD +  +  EI+ + I A  G+  GS   +S++  +   D++A  P + +N   +++LVV+ G  +   L   + E+F Q +S    E G D R      T      A  P V  N AD  YLVVW A
Sbjct:   23 EIGANDFRISDMGTDGDPNVDGDKAQIAFNSTTNQYLVVWEGDDINGEQ-EIYGQLINATTGAEIGSDFRISNMVSSGTVDFRASRPSVAYNVTNNEFLVVWSGDTNSGSLINDDVEIFGQRISATGTEIGSDFRISDANGTGNILGIATNPKVVWNAADNEYLVVWAA 190          
BLAST of mRNA_M-pyrifera_M_contig121024.4331.1 vs. uniprot
Match: UPI001A099FEB (Uncharacterized protein n=1 Tax=Chloroflexi bacterium AL-N15 TaxID=2686370 RepID=UPI001A099FEB)

HSP 1 Score: 79.3 bits (194), Expect = 4.830e-14
Identity = 60/187 (32.09%), Postives = 89/187 (47.59%), Query Frame = 1
Query:   10 EIYGQLIDGAGNEIGPDDFRISVIGDDGDPDRDAFRPGVVANDGTGEFVAVFRG--DQLADQDFEIHARRIAADGSLQGSQVMVSDLFGT-----DWQAGDPVITFNPVTSQYLVVFHGRESDSGLAVGEAEVFAQLLS-PQLVEQGVDDRQITTTPTR-----GAFRPTVATNTADGTYLVVWDAD 531
            EIYGQL+D +G EIG DDFRIS      D       P VV N    E++ V+ G  D +   + EI+ +R++ DG   G   ++    G+      + A  P +++N   ++YLV +        +   E E+F Q L      E G+DD +I+           AF P++A N  +  YLVVW  D
Sbjct:  279 EIYGQLLDSSGVEIGADDFRISNFQVFPDLSFSVNSPAVVYNSTAQEYMVVWSGGLDDIIGINIEIYGQRLSPDGMELGEDDLLISTTGSVDPESSYVASLPALSYNSRNNEYLVTWEVDNFSIEMEDEEYEIFGQRLDGTTAAEIGIDDFRISDMGPEQDEAYNAFSPSIAYNGLNDEYLVVWSGD 465          
BLAST of mRNA_M-pyrifera_M_contig121024.4331.1 vs. uniprot
Match: UPI001CBDB62C (hypothetical protein n=1 Tax=Marinicella sp. NBU2979 TaxID=2873263 RepID=UPI001CBDB62C)

HSP 1 Score: 78.2 bits (191), Expect = 1.110e-13
Identity = 48/121 (39.67%), Postives = 69/121 (57.02%), Query Frame = 1
Query:    4 ENEIYGQLIDGAGNEIGPDDFRISVIGDDGDPDRDAFRPGVVANDGTGEFVAVFRGDQ----LADQDFEIHARRIAADGSLQGSQVMVSDLFGT---DWQAGDPVITFNPVTSQYLVVFHG 345
            E EI+GQ++D  G E+G +DFR+S +G  G  + DA  P V  N   G+++ V+ GD     L D++FEIH R + A G    +   VS + GT   D+QA  P +  NPVT +Y V + G
Sbjct:  254 EFEIFGQILDSVGTEVGNNDFRVSFMGGTGLIEYDAQMPAVAPNTINGDWMVVWYGDDNNQGLIDEEFEIHGRLLTA-GGQDLTDFRVSTMGGTGNGDYQAFRPDVVHNPVTREYAVSWQG 373          
BLAST of mRNA_M-pyrifera_M_contig121024.4331.1 vs. uniprot
Match: A0A8J2TUM0_9FLAO (Por_Secre_tail domain-containing protein n=1 Tax=Aquaticitalea lipolytica TaxID=1247562 RepID=A0A8J2TUM0_9FLAO)

HSP 1 Score: 74.7 bits (182), Expect = 1.890e-12
Identity = 55/175 (31.43%), Postives = 88/175 (50.29%), Query Frame = 1
Query:   46 EIGPDDFRISVIGDDGDPDRDAFRPGVVANDGTGEFVAVFRGDQ----LADQDFEIHARRIAADGSLQGSQVMVSDLFGTD----WQAGDPVITFNPVTSQYLVVFHGRESDSGLAVGEAEVFAQLLSPQLVEQGVDDRQITTTPTRG-----AFRPTVATNTADGTYLVVWDAD 531
            E G +DFRIS +G DG     A  P V  +    +++ V+  D     + D +FE++ + I +DGS  G          TD    ++   P + +N  T+Q+LVV+ G  +  G    E E++ QL++      G + R I+ T T G     A RP++A N+ D  +LVVW++D
Sbjct:   21 EFGTNDFRISNMGTDGITSFFALDPAVAYSSTVDKYLVVWNADDNRNAVVDNEFEVYGQFINSDGSESGPNDFRISFTNTDGNTSFRTDRPDVVWNSTTNQFLVVWEGETNVDG----EIEIYGQLVNSNGTLSGSNFR-ISDTGTEGDGNFDANRPSIAYNSTDNEFLVVWESD 190          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121024.4331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A525DCI0_9DELT8.920e-2038.86Uncharacterized protein n=1 Tax=Desulfobacteraceae... [more]
A0A8J3FL26_9FLAO2.400e-1834.76Por_Secre_tail domain-containing protein n=1 Tax=Y... [more]
A0A3N5LL11_9ACTN3.540e-1840.00Uncharacterized protein (Fragment) n=1 Tax=Actinom... [more]
A0A098LM00_9FLAO8.670e-1734.15Cadherin domain-containing protein n=6 Tax=Jejuia ... [more]
M5T5K2_9BACT1.160e-1634.55Extracellular nuclease n=2 Tax=Rhodopirellula sp. ... [more]
A0A537YR06_9ACTN2.590e-1638.28Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A090VWK3_9FLAO3.030e-1533.73Cadherin domain-containing protein n=1 Tax=Jejuia ... [more]
UPI001A099FEB4.830e-1432.09Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
UPI001CBDB62C1.110e-1339.67hypothetical protein n=1 Tax=Marinicella sp. NBU29... [more]
A0A8J2TUM0_9FLAO1.890e-1231.43Por_Secre_tail domain-containing protein n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121024contigM-pyrifera_M_contig121024:5..535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score88.2
Seed ortholog evalue4.2e-15
Seed eggNOG ortholog595460.RRSWK_06797
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Involved in the tonB-independent uptake of proteins
EggNOG OGs2J4N4@203682,COG0823@1,COG0823@2,COG2931@1,COG2931@2,COG3210@1,COG3210@2
COG Functional cat.U
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size531
Cds size531
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815729.677167-CDS-M-pyrifera_M_contig121024:4..5351622815729.677167-CDS-M-pyrifera_M_contig121024:4..535Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121024 5..535 +
1692277542.104314-CDS-M-pyrifera_M_contig121024:4..5351692277542.104314-CDS-M-pyrifera_M_contig121024:4..535Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121024 5..535 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121024.4331.1prot_M-pyrifera_M_contig121024.4331.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121024 5..535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121024.4331.1

>prot_M-pyrifera_M_contig121024.4331.1 ID=prot_M-pyrifera_M_contig121024.4331.1|Name=mRNA_M-pyrifera_M_contig121024.4331.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=177bp
NENEIYGQLIDGAGNEIGPDDFRISVIGDDGDPDRDAFRPGVVANDGTGE
FVAVFRGDQLADQDFEIHARRIAADGSLQGSQVMVSDLFGTDWQAGDPVI
TFNPVTSQYLVVFHGRESDSGLAVGEAEVFAQLLSPQLVEQGVDDRQITT
TPTRGAFRPTVATNTADGTYLVVWDAD
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mRNA from alignment at M-pyrifera_M_contig121024:5..535+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121024.4331.1 ID=mRNA_M-pyrifera_M_contig121024.4331.1|Name=mRNA_M-pyrifera_M_contig121024.4331.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=531bp|location=Sequence derived from alignment at M-pyrifera_M_contig121024:5..535+ (Macrocystis pyrifera P11B4 male)
AACGAGAACGAGATCTACGGCCAGCTCATCGACGGCGCCGGCAACGAGAT CGGCCCAGACGACTTTCGCATCTCGGTCATCGGCGACGACGGCGATCCGG ATCGCGACGCGTTCCGCCCCGGGGTGGTCGCCAACGACGGGACCGGTGAG TTCGTGGCCGTCTTCCGCGGCGACCAGCTCGCCGACCAGGACTTCGAGAT CCACGCGCGCCGCATCGCCGCCGACGGCTCGCTCCAAGGCTCGCAGGTCA TGGTCTCGGATCTCTTCGGGACCGACTGGCAGGCGGGTGACCCGGTCATC ACGTTCAATCCCGTGACCTCGCAGTATCTGGTCGTCTTCCACGGCCGGGA GAGCGACAGCGGCCTCGCGGTCGGCGAGGCCGAGGTCTTCGCGCAGCTTC TGTCGCCCCAGCTCGTCGAGCAGGGCGTCGACGACCGCCAGATCACGACG ACCCCGACCCGCGGGGCGTTCCGTCCGACCGTGGCGACGAACACCGCGGA CGGTACCTATCTGGTCGTCTGGGACGCGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121024:5..535+

>mRNA_M-pyrifera_M_contig121024.4331.1 ID=mRNA_M-pyrifera_M_contig121024.4331.1|Name=mRNA_M-pyrifera_M_contig121024.4331.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1062bp|location=Sequence derived from alignment at M-pyrifera_M_contig121024:5..535+ (Macrocystis pyrifera P11B4 male)
AACGAGAACGAGATCTACGGCCAGCTCATCGACGGCGCCGGCAACGAGAT
CGGCCCAGACGACTTTCGCATCTCGGTCATCGGCGACGACGGCGATCCGG
ATCGCGACGCGTTCCGCCCCGGGGTGGTCGCCAACGACGGGACCGGTGAG
TTCGTGGCCGTCTTCCGCGGCGACCAGCTCGCCGACCAGGACTTCGAGAT
CCACGCGCGCCGCATCGCCGCCGACGGCTCGCTCCAAGGCTCGCAGGTCA
TGGTCTCGGATCTCTTCGGGACCGACTGGCAGGCGGGTGACCCGGTCATC
ACGTTCAATCCCGTGACCTCGCAGTATCTGGTCGTCTTCCACGGCCGGGA
GAGCGACAGCGGCCTCGCGGTCGGCGAGGCCGAGGTCTTCGCGCAGCTTC
TGTCGCCCCAGCTCGTCGAGCAGGGCGTCGACGACCGCCAGATCACGACG
ACCCCGACCCGCGGGGCGTTCCGTCCGACCGTGGCGACGAACACCGCGGA
CGGTACCTATCTGGTCGTCTGGGACGCGGACAACGAGAACGAGATCTACG
GCCAGCTCATCGACGGCGCCGGCAACGAGATCGGCCCAGACGACTTTCGC
ATCTCGGTCATCGGCGACGACGGCGATCCGGATCGCGACGCGTTCCGCCC
CGGGGTGGTCGCCAACGACGGGACCGGTGAGTTCGTGGCCGTCTTCCGCG
GCGACCAGCTCGCCGACCAGGACTTCGAGATCCACGCGCGCCGCATCGCC
GCCGACGGCTCGCTCCAAGGCTCGCAGGTCATGGTCTCGGATCTCTTCGG
GACCGACTGGCAGGCGGGTGACCCGGTCATCACGTTCAATCCCGTGACCT
CGCAGTATCTGGTCGTCTTCCACGGCCGGGAGAGCGACAGCGGCCTCGCG
GTCGGCGAGGCCGAGGTCTTCGCGCAGCTTCTGTCGCCCCAGCTCGTCGA
GCAGGGCGTCGACGACCGCCAGATCACGACGACCCCGACCCGCGGGGCGT
TCCGTCCGACCGTGGCGACGAACACCGCGGACGGTACCTATCTGGTCGTC
TGGGACGCGGAC
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