mRNA_M-pyrifera_M_contig120985.4315.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120985.4315.1
Unique NamemRNA_M-pyrifera_M_contig120985.4315.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120985.4315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120985contigM-pyrifera_M_contig120985:3..517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size414
Cds size414
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120985.4315.1prot_M-pyrifera_M_contig120985.4315.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120985 3..517 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815728.9699223-CDS-M-pyrifera_M_contig120985:2..1551622815728.9699223-CDS-M-pyrifera_M_contig120985:2..155Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120985 3..155 +
1692277541.7969537-CDS-M-pyrifera_M_contig120985:2..1551692277541.7969537-CDS-M-pyrifera_M_contig120985:2..155Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120985 3..155 +
1622815728.9805026-CDS-M-pyrifera_M_contig120985:207..3281622815728.9805026-CDS-M-pyrifera_M_contig120985:207..328Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120985 208..328 +
1692277541.8063364-CDS-M-pyrifera_M_contig120985:207..3281692277541.8063364-CDS-M-pyrifera_M_contig120985:207..328Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120985 208..328 +
1622815728.9963853-CDS-M-pyrifera_M_contig120985:377..5171622815728.9963853-CDS-M-pyrifera_M_contig120985:377..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120985 378..517 +
1692277541.814968-CDS-M-pyrifera_M_contig120985:377..5171692277541.814968-CDS-M-pyrifera_M_contig120985:377..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120985 378..517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120985.4315.1

>prot_M-pyrifera_M_contig120985.4315.1 ID=prot_M-pyrifera_M_contig120985.4315.1|Name=mRNA_M-pyrifera_M_contig120985.4315.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
LELDCRQGAVPVFSGHLTAVGVGTPLTVHSDFERVGASCPAGSALTGIRF
DTGGCGLNSTAWEEANMDYTKCSEEDDATQGLVMEIQCASYYVIQDTSAV
WEETGVGYPLVDHADFERVGGECSDGSVATGVAFRRGG
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mRNA from alignment at M-pyrifera_M_contig120985:3..517+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120985.4315.1 ID=mRNA_M-pyrifera_M_contig120985.4315.1|Name=mRNA_M-pyrifera_M_contig120985.4315.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=515bp|location=Sequence derived from alignment at M-pyrifera_M_contig120985:3..517+ (Macrocystis pyrifera P11B4 male)
CTGGAGCTGGACTGCAGGCAGGGGGCCGTGCCGGTGTTCTCCGGCCACTT
GACAGCCGTCGGTGTTGGCACTCCCCTCACTGTGCACAGCGACTTCGAGC
GTGTCGGAGCTTCGTGCCCAGCCGGCTCGGCCCTGACTGGCATTCGGTTC
GACGTGAGTGTGCCAATGGGGGGCTTCAAAGAAGCGTTTGCTGACGTTGC
TGTAGACCGGAGGGTGTGGCCTTAATAGCACCGCGTGGGAAGAGGCCAAC
ATGGACTACACGAAATGCTCCGAGGAAGACGACGCCACGCAAGGGCTCGT
TATGGAGATCCAATGTGCCAGCTACTGTAAGCCATTCCCAGTCAAAAACT
GCATGAACTCTCCCTGACTGCTTAGACGTTATTCAGGACACCAGCGCTGT
ATGGGAAGAGACAGGCGTGGGCTACCCGCTCGTGGACCACGCTGACTTCG
AGAGGGTCGGGGGAGAATGCAGTGACGGCAGCGTGGCCACTGGCGTTGCC
TTTCGCAGGGGGGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120985:3..517+

>mRNA_M-pyrifera_M_contig120985.4315.1 ID=mRNA_M-pyrifera_M_contig120985.4315.1|Name=mRNA_M-pyrifera_M_contig120985.4315.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig120985:3..517+ (Macrocystis pyrifera P11B4 male)
CTGGAGCTGGACTGCAGGCAGGGGGCCGTGCCGGTGTTCTCCGGCCACTT
GACAGCCGTCGGTGTTGGCACTCCCCTCACTGTGCACAGCGACTTCGAGC
GTGTCGGAGCTTCGTGCCCAGCCGGCTCGGCCCTGACTGGCATTCGGTTC
GACCTGGAGCTGGACTGCAGGCAGGGGGCCGTGCCGGTGTTCTCCGGCCA
CTTGACAGCCGTCGGTGTTGGCACTCCCCTCACTGTGCACAGCGACTTCG
AGCGTGTCGGAGCTTCGTGCCCAGCCGGCTCGGCCCTGACTGGCATTCGG
TTCGACACCGGAGGGTGTGGCCTTAATAGCACCGCGTGGGAAGAGGCCAA
CATGGACTACACGAAATGCTCCGAGGAAGACGACGCCACGCAAGGGCTCG
TTATGGAGATCCAATGTGCCAGCTACTACCGGAGGGTGTGGCCTTAATAG
CACCGCGTGGGAAGAGGCCAACATGGACTACACGAAATGCTCCGAGGAAG
ACGACGCCACGCAAGGGCTCGTTATGGAGATCCAATGTGCCAGCTACTAC
GTTATTCAGGACACCAGCGCTGTATGGGAAGAGACAGGCGTGGGCTACCC
GCTCGTGGACCACGCTGACTTCGAGAGGGTCGGGGGAGAATGCAGTGACG
GCAGCGTGGCCACTGGCGTTGCCTTTCGCAGGGGGGGAACGTTATTCAGG
ACACCAGCGCTGTATGGGAAGAGACAGGCGTGGGCTACCCGCTCGTGGAC
CACGCTGACTTCGAGAGGGTCGGGGGAGAATGCAGTGACGGCAGCGTGGC
CACTGGCGTTGCCTTTCGCAGGGGGGGA
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