prot_M-pyrifera_M_contig120967.4311.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig120967.4311.1
Unique Nameprot_M-pyrifera_M_contig120967.4311.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length108
Homology
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: H2YA27_CIOSA (RRM domain-containing protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2YA27_CIOSA)

HSP 1 Score: 99.8 bits (247), Expect = 9.950e-24
Identity = 53/108 (49.07%), Postives = 76/108 (70.37%), Query Frame = 0
Query:    1 RSPRRSSPRRSRSPSPMAVETKIHVANISRNVRKEHLQDIFETYGKVRTAEVAEDRHGAPRGFAYVDFEDWESAKKAVSYMNGGQIDGKKVKVEFKNPPRRAIRKRAS 108
            RSPRR   RR RSP+P    TK+H+ N+++N+ KEH+ +IF  YGKV++ ++  +R+G PRG AYV+F+D   A+KA+ YMNGGQIDG+ V +    P RR  ++R S
Sbjct:   89 RSPRRPI-RRERSPTPKP--TKLHIGNLTKNINKEHVTEIFSYYGKVKSVDMPMERNGLPRGLAYVEFDDHTEAEKALKYMNGGQIDGQVVTLRSVLPIRRRPQRRPS 193          
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: F6W3V6_CIOIN (RRM domain-containing protein n=2 Tax=Ciona intestinalis TaxID=7719 RepID=F6W3V6_CIOIN)

HSP 1 Score: 97.4 bits (241), Expect = 3.970e-23
Identity = 52/107 (48.60%), Postives = 74/107 (69.16%), Query Frame = 0
Query:    1 RSPRRSSPRRSRSPSPMAVETKIHVANISRNVRKEHLQDIFETYGKVRTAEVAEDRHGAPRGFAYVDFEDWESAKKAVSYMNGGQIDGKKVKVEF-----KNPPRRA 102
            RSPRR   RR RSP+P    TK+HV N+++N+ KEH+ +IF  YGKV+T ++  +R+G PRG AYV+F+D   A KA+ +M+GGQIDG+ V +       + PPRR+
Sbjct:   87 RSPRRPI-RRERSPTPKP--TKLHVGNLTKNINKEHVNEIFSYYGKVKTVDMPMERNGIPRGLAYVEFDDHTEADKALKFMDGGQIDGQVVAIRAVLPIRRRPPRRS 190          
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: A7RUM9_NEMVE (Predicted protein (Fragment) n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RUM9_NEMVE)

HSP 1 Score: 86.3 bits (212), Expect = 5.400e-20
Identity = 39/81 (48.15%), Postives = 62/81 (76.54%), Query Frame = 0
Query:   21 TKIHVANISRNVRKEHLQDIFETYGKVRTAEVAEDR-HGAPRGFAYVDFEDWESAKKAVSYMNGGQIDGKKVKVEFKNPPR 100
            TK++VA+++RNV K+H+Q+IF  YG+V+T ++  DR +   RGFAYV++ D E  +KA+ +M+GGQIDG+++ V+   PPR
Sbjct:    1 TKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALKHMDGGQIDGQEIAVQSVLPPR 81          
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: A0A4Y2FXP1_ARAVE (RNA-binding protein with serine-rich domain 1-B n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2FXP1_ARAVE)

HSP 1 Score: 90.5 bits (223), Expect = 1.350e-19
Identity = 51/98 (52.04%), Postives = 70/98 (71.43%), Query Frame = 0
Query:    9 RRSRSPSPMAVETKIHVANISRNVRKEHLQDIFETYGKVRTAEVA--EDRHGAPRGFAYVDFEDWESAKKAVSYMNGGQIDGKKVK---VEFKNPPRR 101
            RR +SPSP    TKI V+ ++RNV KEH+Q+IF TYG +R  ++    DR    RGFAYV+FE+ E A+KA++YM+GGQIDG++VK   V+F   P+R
Sbjct:  143 RRRKSPSPRL--TKIQVSKLTRNVTKEHVQEIFSTYGPLRNVDLVIDRDRPHLSRGFAYVEFENPEDAEKALNYMDGGQIDGQEVKASLVQFHPAPQR 238          
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: A0A369RYS5_9METZ (RNA-binding protein with serine-rich domain 1 n=2 Tax=Trichoplax TaxID=10227 RepID=A0A369RYS5_9METZ)

HSP 1 Score: 90.1 bits (222), Expect = 2.990e-19
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 0
Query:   20 ETKIHVANISRNVRKEHLQDIFETYGKVRTAEVAEDR-HGAPRGFAYVDFEDWESAKKAVSYMNGGQIDGKKVKVEFKNP 98
            + KIH+  ++RN  K+H+Q+IF  YGKV+  +V  DR +G PRGFAY++FE+ +SA+ A+ YMNGGQIDG+ V V    P
Sbjct:  167 QCKIHLGRLTRNATKDHVQEIFSNYGKVKNVDVPTDRANGLPRGFAYIEFENGKSAENAIKYMNGGQIDGQAVTVALVLP 246          
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: A0A7J7JE00_BUGNE (RNPS1 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JE00_BUGNE)

HSP 1 Score: 89.4 bits (220), Expect = 3.100e-19
Identity = 47/94 (50.00%), Postives = 63/94 (67.02%), Query Frame = 0
Query:    9 RRSRSPSPMAVETKIHVANISRNVRKEHLQDIFETYGKVRTAEVAEDRH-GAPRGFAYVDFEDWESAKKAVSYMNGGQIDGKKVKVEFKNPPRR 101
            +R R+PSP+   TKIH+  ++RNV K+H+Q+IF  YG V+  E+  +R    P G AYV+F D ESA KA  YMNGGQIDG+++ V    P RR
Sbjct:  105 KRRRTPSPLKA-TKIHIGKLTRNVTKDHIQEIFSVYGNVKLTELPMERKMNIPTGHAYVEFTDSESATKAEKYMNGGQIDGQEIVVRCVLPQRR 197          
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: A0A0R3RX65_9BILA (RRM domain-containing protein n=1 Tax=Elaeophora elaphi TaxID=1147741 RepID=A0A0R3RX65_9BILA)

HSP 1 Score: 86.3 bits (212), Expect = 1.580e-18
Identity = 48/105 (45.71%), Postives = 68/105 (64.76%), Query Frame = 0
Query:    1 RSPRRSSPRRSRSPSPMAVETKIHVANISRNVRKEHLQDIFETYGKVRTAEVAEDRHGAP--RGFAYVDFEDWESAKKAVSYMNGGQIDGKKVKVEFKNPPRRAI 103
            RSP ++SP R  +P P     ++ V N+SRNV KEHL +IF  YG ++T E+  DR      RG+ YV+FE  E A+KA+ +M+GGQIDG++V  E  +PPR  +
Sbjct:   69 RSPFQASPVRKATPPPR----RLCVRNLSRNVTKEHLSEIFSVYGSLKTCELPMDRQHTHLGRGYGYVEFEQPEDAEKALKHMDGGQIDGQEVTCELTHPPRSTL 169          
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: A0A8C2QW01_CAPHI (RNA-binding protein with serine-rich domain 1 n=1 Tax=Capra hircus TaxID=9925 RepID=A0A8C2QW01_CAPHI)

HSP 1 Score: 87.4 bits (215), Expect = 1.680e-18
Identity = 41/90 (45.56%), Postives = 62/90 (68.89%), Query Frame = 0
Query:   12 RSPSPMAVETKIHVANISRNVRKEHLQDIFETYGKVRTAEVAEDRHGAPRGFAYVDFEDWESAKKAVSYMNGGQIDGKKVKVEFKNPPRR 101
            R PSP    TK+H+A ++RNV K+H+++IF T+GKVR  ++  +R       AYV+FE  + A+KA+ YM+GGQIDG++++     PPRR
Sbjct:  123 RRPSPSPKPTKLHIARLTRNVTKDHIREIFSTFGKVRVIDMPVERMHPGLSDAYVEFETPDGAEKALKYMDGGQIDGQEIRATAVPPPRR 212          
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: A0A452GB38_CAPHI (RNA-binding protein with serine-rich domain 1 n=1 Tax=Capra hircus TaxID=9925 RepID=A0A452GB38_CAPHI)

HSP 1 Score: 86.3 bits (212), Expect = 4.500e-18
Identity = 41/90 (45.56%), Postives = 61/90 (67.78%), Query Frame = 0
Query:   12 RSPSPMAVETKIHVANISRNVRKEHLQDIFETYGKVRTAEVAEDRHGAPRGFAYVDFEDWESAKKAVSYMNGGQIDGKKVKVEFKNPPRR 101
            R PSP    TK+H+A ++RNV K+H+++IF T+GKVR  ++   R       AYV+FE  + A+KA+ YM+GGQIDG++++     PPRR
Sbjct:  144 RRPSPSPKPTKLHIARLTRNVTKDHIREIFSTFGKVRVIDMPVKRMHPGLSDAYVEFETPDGAEKALKYMDGGQIDGQEIRATAVPPPRR 233          
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: A0A7S2X9B6_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X9B6_9EUKA)

HSP 1 Score: 85.1 bits (209), Expect = 6.960e-18
Identity = 40/81 (49.38%), Postives = 60/81 (74.07%), Query Frame = 0
Query:   21 TKIHVANISRNVRKEHLQDIFETYGKVRTAEVAED-RHGAPRGFAYVDFEDWESAKKAVSYMNGGQIDGKKVKVEFKNPPR 100
            T +HV N++RNV+KEHL++IF  YGKV+  E+A D +   P GFA+V+FE  + A++A+ +M+ GQIDG K+ V++K  PR
Sbjct:   55 TTLHVMNLTRNVQKEHLEEIFGVYGKVKEVEIALDPKVKLPLGFAFVEFESKDEAEEAIKFMDQGQIDGNKIHVKYKFVPR 135          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H2YA27_CIOSA9.950e-2449.07RRM domain-containing protein n=1 Tax=Ciona savign... [more]
F6W3V6_CIOIN3.970e-2348.60RRM domain-containing protein n=2 Tax=Ciona intest... [more]
A7RUM9_NEMVE5.400e-2048.15Predicted protein (Fragment) n=2 Tax=Nematostella ... [more]
A0A4Y2FXP1_ARAVE1.350e-1952.04RNA-binding protein with serine-rich domain 1-B n=... [more]
A0A369RYS5_9METZ2.990e-1951.25RNA-binding protein with serine-rich domain 1 n=2 ... [more]
A0A7J7JE00_BUGNE3.100e-1950.00RNPS1 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0... [more]
A0A0R3RX65_9BILA1.580e-1845.71RRM domain-containing protein n=1 Tax=Elaeophora e... [more]
A0A8C2QW01_CAPHI1.680e-1845.56RNA-binding protein with serine-rich domain 1 n=1 ... [more]
A0A452GB38_CAPHI4.500e-1845.56RNA-binding protein with serine-rich domain 1 n=1 ... [more]
A0A7S2X9B6_9EUKA6.960e-1849.38Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 22..94
e-value: 7.8E-21
score: 85.2
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 24..92
e-value: 6.5E-18
score: 64.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 21..98
score: 19.144
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..106
e-value: 6.1E-25
score: 90.0
NoneNo IPR availablePANTHERPTHR15481RIBONUCLEIC ACID BINDING PROTEIN S1coord: 3..102
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 6..102

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120967contigM-pyrifera_M_contig120967:2..374 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120967.4311.1mRNA_M-pyrifera_M_contig120967.4311.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig120967 2..374 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig120967.4311.1 ID=prot_M-pyrifera_M_contig120967.4311.1|Name=mRNA_M-pyrifera_M_contig120967.4311.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
RSPRRSSPRRSRSPSPMAVETKIHVANISRNVRKEHLQDIFETYGKVRTA
EVAEDRHGAPRGFAYVDFEDWESAKKAVSYMNGGQIDGKKVKVEFKNPPR
RAIRKRAS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf