mRNA_M-pyrifera_M_contig120960.4309.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120960.4309.1
Unique NamemRNA_M-pyrifera_M_contig120960.4309.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig120960.4309.1 vs. uniprot
Match: A0A1V9ZRL1_9STRA (Rho-GAP domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZRL1_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 8.860e-11
Identity = 42/116 (36.21%), Postives = 59/116 (50.86%), Query Frame = 1 
Query:    1 VPPVLEQLKAYLVEHGGLELAQIFLKPGDEVELLTVKDQLNREVFEECKDLYCIATLIVTWLRELSAPLLSPLSENLLLSATG----AYACPSLTDQMTEPQKTILVGGLELLGDV 336
            +P VL+ +K YLV+HGGLE   IF    D       K+ +N  VF  C D++ IA LI  W REL   L + + E L+  A G          LTD +   QK +++  L+L+  V
Sbjct:  326 IPAVLQMMKEYLVQHGGLETEGIFRLAPDRDACAAAKEAMNNGVFAGCNDVHIIANLIKVWFRELPDSLFNVIPEKLIYKACGLGDPVQVLRVLTD-VPASQKDVILWLLDLMAAV 440
[Close]
BLAST of mRNA_M-pyrifera_M_contig120960.4309.1 vs. uniprot
Match: T0R1N3_SAPDV (Rho-GAP domain-containing protein n=2 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R1N3_SAPDV)

HSP 1 Score: 65.9 bits (159), Expect = 3.110e-10
Identity = 38/115 (33.04%), Postives = 60/115 (52.17%), Query Frame = 1 
Query:    1 VPPVLEQLKAYLVEHGGLELAQIFLKPGDEVELLTVKDQLNREVFEECKDLYCIATLIVTWLRELSAPLLSPLSENLLLSATGAYACPSLTDQMTE---PQKTILVGGLELLGDV 336
            +P VL+ ++ YLV++GGLE   IF    D+     VKD +N  VF  C D++ IA LI  W REL   LL  + E  +    G      + D + +    Q+++++  L+L+  V
Sbjct:  331 IPAVLQMMREYLVQNGGLETEGIFRLAPDKEACSAVKDAMNNGVFTGCSDVHIIANLIKVWFRELPDSLLDVIPEKCIYKVCGVTDPTQVLDVLRDVPTSQRSVILWLLDLMAAV 445
[Close]
BLAST of mRNA_M-pyrifera_M_contig120960.4309.1 vs. uniprot
Match: A0A067CWN0_SAPPC (Rho-GAP domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CWN0_SAPPC)

HSP 1 Score: 63.9 bits (154), Expect = 1.460e-9
Identity = 37/115 (32.17%), Postives = 61/115 (53.04%), Query Frame = 1 
Query:    1 VPPVLEQLKAYLVEHGGLELAQIFLKPGDEVELLTVKDQLNREVFEECKDLYCIATLIVTWLRELSAPLLSPLSENLLLSATGAYACPSLTDQMTE---PQKTILVGGLELLGDV 336
            +P VL+ ++ YLV++GGLE   IF    D+     VK+ +N  VF  C D++ IA LI  W REL   LL+ + E  +    G      + D + +    Q+++++  L+L+  V
Sbjct:  333 IPAVLQMMREYLVQNGGLETEGIFRLAPDKEACSAVKEAMNNGVFAGCNDVHIIANLIKVWFRELPESLLNVIPEKRIYQVCGVTDPSLVLDVLRDVPTSQRSVILWLLDLMAAV 447
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120960.4309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A1V9ZRL1_9STRA8.860e-1136.21Rho-GAP domain-containing protein n=1 Tax=Achlya h... [more]
T0R1N3_SAPDV3.110e-1033.04Rho-GAP domain-containing protein n=2 Tax=Saproleg... [more]
A0A067CWN0_SAPPC1.460e-932.17Rho-GAP domain-containing protein n=1 Tax=Saproleg... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120960contigM-pyrifera_M_contig120960:197..532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue8e-12
Seed eggNOG ortholog192875.XP_004365911.1
KEGG koko:K20642
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTPase activator activity
EggNOG OGsKOG4270@1,KOG4270@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815728.754309-CDS-M-pyrifera_M_contig120960:196..5321622815728.754309-CDS-M-pyrifera_M_contig120960:196..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120960 197..532 +
1692277541.7047167-CDS-M-pyrifera_M_contig120960:196..5321692277541.7047167-CDS-M-pyrifera_M_contig120960:196..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120960 197..532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120960.4309.1prot_M-pyrifera_M_contig120960.4309.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120960 197..532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120960.4309.1

>prot_M-pyrifera_M_contig120960.4309.1 ID=prot_M-pyrifera_M_contig120960.4309.1|Name=mRNA_M-pyrifera_M_contig120960.4309.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
VPPVLEQLKAYLVEHGGLELAQIFLKPGDEVELLTVKDQLNREVFEECKD
LYCIATLIVTWLRELSAPLLSPLSENLLLSATGAYACPSLTDQMTEPQKT
ILVGGLELLGDV
back to top

mRNA from alignment at M-pyrifera_M_contig120960:197..532+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120960.4309.1 ID=mRNA_M-pyrifera_M_contig120960.4309.1|Name=mRNA_M-pyrifera_M_contig120960.4309.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig120960:197..532+ (Macrocystis pyrifera P11B4 male)
GTGCCGCCGGTGCTGGAGCAGCTGAAGGCGTACCTGGTGGAGCACGGCGG
CCTGGAGCTGGCGCAGATCTTCCTCAAGCCGGGCGACGAGGTGGAGCTGC
TGACGGTGAAGGACCAGCTGAACCGCGAGGTGTTCGAGGAGTGCAAGGAC
CTCTACTGCATTGCGACGCTGATCGTGACGTGGCTGCGCGAGCTCTCTGC
GCCGCTGCTCTCGCCGCTCTCGGAGAACCTCCTGCTCTCGGCCACGGGCG
CGTACGCGTGCCCCTCCCTCACGGACCAGATGACGGAGCCGCAGAAGACC
ATCCTCGTCGGGGGGCTGGAGCTGCTGGGCGACGTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig120960:197..532+

>mRNA_M-pyrifera_M_contig120960.4309.1 ID=mRNA_M-pyrifera_M_contig120960.4309.1|Name=mRNA_M-pyrifera_M_contig120960.4309.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig120960:197..532+ (Macrocystis pyrifera P11B4 male)
GTGCCGCCGGTGCTGGAGCAGCTGAAGGCGTACCTGGTGGAGCACGGCGG
CCTGGAGCTGGCGCAGATCTTCCTCAAGCCGGGCGACGAGGTGGAGCTGC
TGACGGTGAAGGACCAGCTGAACCGCGAGGTGTTCGAGGAGTGCAAGGAC
CTCTACTGCATTGCGACGCTGATCGTGACGTGGCTGCGCGAGCTCTCTGC
GCCGCTGCTCTCGCCGCTCTCGGAGAACCTCCTGCTCTCGGCCACGGGCG
CGTACGCGTGCCCCTCCCTCACGGACCAGATGACGGAGCCGCAGAAGACC
ATCCTCGTCGGGGGGCTGGAGCTGCTGGGCGACGTGGTGCCGCCGGTGCT
GGAGCAGCTGAAGGCGTACCTGGTGGAGCACGGCGGCCTGGAGCTGGCGC
AGATCTTCCTCAAGCCGGGCGACGAGGTGGAGCTGCTGACGGTGAAGGAC
CAGCTGAACCGCGAGGTGTTCGAGGAGTGCAAGGACCTCTACTGCATTGC
GACGCTGATCGTGACGTGGCTGCGCGAGCTCTCTGCGCCGCTGCTCTCGC
CGCTCTCGGAGAACCTCCTGCTCTCGGCCACGGGCGCGTACGCGTGCCCC
TCCCTCACGGACCAGATGACGGAGCCGCAGAAGACCATCCTCGTCGGGGG
GCTGGAGCTGCTGGGCGACGTG
back to top