mRNA_M-pyrifera_M_contig120953.4307.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120953.4307.1
Unique NamemRNA_M-pyrifera_M_contig120953.4307.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120953.4307.1 vs. uniprot
Match: A0A6B2KYF1_9EUKA (Phosphoinositide phospholipase C n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KYF1_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 4.540e-6
Identity = 41/150 (27.33%), Postives = 73/150 (48.67%), Query Frame = 1 
Query:   31 IRLLDVTELRKGQKTKTFENSKEAGERIL--LSFSLVYG---------DRKDLNLVAKNSRKFDFWVEGLIGLVSYCKEQDTEMGAVRMAWDREAGESETVTYKQICSMLYKLNMKASSKSIKRTIRADDPSKLDKMTFQDFVVLIHDLR 447
            + +LD+TE+R+GQKT  F   K         LSFS++YG         D   ++LVA +  ++  W+ GL  LV   ++ D E+  ++  W R+  + E +  +Q   +L ++N +A  + I +     D     ++    F+ L+  LR
Sbjct:   38 LNVLDITEIRQGQKTMVFNKQKSVASTFPENLSFSIMYGIMGKNTATADGNSIDLVAGSELEYSMWISGLKMLVD--RKLDPELSWIKATW-RKLKKPE-INLRQTIDLLSQVNFQAPRRVIHKEFIELDKEGRKRINLDGFLALLDKLR 183
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120953.4307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6B2KYF1_9EUKA4.540e-627.33Phosphoinositide phospholipase C n=1 Tax=Arcella i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120953contigM-pyrifera_M_contig120953:62..511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size450
Cds size450
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815728.6787837-CDS-M-pyrifera_M_contig120953:61..5111622815728.6787837-CDS-M-pyrifera_M_contig120953:61..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120953 62..511 -
1692277541.6771-CDS-M-pyrifera_M_contig120953:61..5111692277541.6771-CDS-M-pyrifera_M_contig120953:61..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120953 62..511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120953.4307.1prot_M-pyrifera_M_contig120953.4307.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120953 62..511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120953.4307.1

>prot_M-pyrifera_M_contig120953.4307.1 ID=prot_M-pyrifera_M_contig120953.4307.1|Name=mRNA_M-pyrifera_M_contig120953.4307.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp
MDVKGTKSLRIRLLDVTELRKGQKTKTFENSKEAGERILLSFSLVYGDRK
DLNLVAKNSRKFDFWVEGLIGLVSYCKEQDTEMGAVRMAWDREAGESETV
TYKQICSMLYKLNMKASSKSIKRTIRADDPSKLDKMTFQDFVVLIHDLRY
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mRNA from alignment at M-pyrifera_M_contig120953:62..511-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120953.4307.1 ID=mRNA_M-pyrifera_M_contig120953.4307.1|Name=mRNA_M-pyrifera_M_contig120953.4307.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig120953:62..511- (Macrocystis pyrifera P11B4 male)
ATGGATGTGAAGGGCACCAAGTCCCTGCGCATTCGCCTGCTCGATGTCAC
CGAGCTGAGGAAGGGGCAGAAGACGAAGACGTTCGAGAACAGCAAGGAGG
CAGGCGAGAGGATCCTGCTCTCCTTCTCGCTCGTCTACGGCGACAGGAAG
GACCTCAACCTCGTGGCGAAGAACTCCCGCAAGTTCGACTTCTGGGTGGA
GGGCCTCATCGGCCTGGTGTCCTACTGCAAGGAGCAGGACACAGAGATGG
GTGCGGTGAGGATGGCGTGGGACAGGGAGGCAGGCGAGTCGGAGACGGTT
ACCTACAAGCAGATCTGCTCGATGCTCTACAAGCTCAACATGAAGGCCTC
GTCCAAGTCCATCAAGCGCACTATCCGCGCCGACGACCCCAGCAAGCTCG
ACAAGATGACCTTCCAGGACTTTGTGGTGCTCATCCACGACCTCCGCTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120953:62..511-

>mRNA_M-pyrifera_M_contig120953.4307.1 ID=mRNA_M-pyrifera_M_contig120953.4307.1|Name=mRNA_M-pyrifera_M_contig120953.4307.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig120953:62..511- (Macrocystis pyrifera P11B4 male)
ATGGATGTGAAGGGCACCAAGTCCCTGCGCATTCGCCTGCTCGATGTCAC
CGAGCTGAGGAAGGGGCAGAAGACGAAGACGTTCGAGAACAGCAAGGAGG
CAGGCGAGAGGATCCTGCTCTCCTTCTCGCTCGTCTACGGCGACAGGAAG
GACCTCAACCTCGTGGCGAAGAACTCCCGCAAGTTCGACTTCTGGGTGGA
GGGCCTCATCGGCCTGGTGTCCTACTGCAAGGAGCAGGACACAGAGATGG
GTGCGGTGAGGATGGCGTGGGACAGGGAGGCAGGCGAGTCGGAGACGGTT
ACCTACAAGCAGATCTGCTCGATGCTCTACAAGCTCAACATGAAGGCCTC
GTCCAAGTCCATCAAGCGCACTATCCGCGCCGACGACCCCAGCAAGCTCG
ACAAGATGACCTTCCAGGACTTTGTGGTGCTCATCCACGACCTCCGCTAC
ATGGATGTGAAGGGCACCAAGTCCCTGCGCATTCGCCTGCTCGATGTCAC
CGAGCTGAGGAAGGGGCAGAAGACGAAGACGTTCGAGAACAGCAAGGAGG
CAGGCGAGAGGATCCTGCTCTCCTTCTCGCTCGTCTACGGCGACAGGAAG
GACCTCAACCTCGTGGCGAAGAACTCCCGCAAGTTCGACTTCTGGGTGGA
GGGCCTCATCGGCCTGGTGTCCTACTGCAAGGAGCAGGACACAGAGATGG
GTGCGGTGAGGATGGCGTGGGACAGGGAGGCAGGCGAGTCGGAGACGGTT
ACCTACAAGCAGATCTGCTCGATGCTCTACAAGCTCAACATGAAGGCCTC
GTCCAAGTCCATCAAGCGCACTATCCGCGCCGACGACCCCAGCAAGCTCG
ACAAGATGACCTTCCAGGACTTTGTGGTGCTCATCCACGACCTCCGCTAC
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