mRNA_M-pyrifera_M_contig120951.4306.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120951.4306.1
Unique NamemRNA_M-pyrifera_M_contig120951.4306.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120951.4306.1 vs. uniprot
Match: A0A2E1DQA6_9RHOB (Autotransporter domain-containing protein (Fragment) n=1 Tax=Roseovarius sp. TaxID=1486281 RepID=A0A2E1DQA6_9RHOB)

HSP 1 Score: 66.6 bits (161), Expect = 1.310e-9
Identity = 54/144 (37.50%), Postives = 73/144 (50.69%), Query Frame = 1 
Query:  115 GIRTSTHDGATNIILGGNVSSGGDGIRATARGTGAVTIGGTGDVTGGTDAGD------DGIEINTASGDAVVSLNGTISGDPGIIMMS-SXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSIEVDRAGNIRGQSDGIHATISDKG 525
            GI T   DG T I LGG+V +  DGI A A GTGAVT+ GTG+VTG  DA        DGI+  T SGD  + + GTI+G PGI   S +                            G++ V+R G++ G ++GI A+++  G
Sbjct:  676 GIETVAEDGDTVITLGGDVVADADGINAVASGTGAVTVTGTGNVTG--DAAGTGNPAFDGIDAQTDSGDIRIDVAGTITGAPGINAQSLNGGNVEITGTGDVSDVVGAGILASTTGGNGNVTVNRDGSVDGGAEGIVASVAGTG 817
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120951.4306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2E1DQA6_9RHOB1.310e-937.50Autotransporter domain-containing protein (Fragmen... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120951contigM-pyrifera_M_contig120951:4..528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size525
Cds size525
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815728.6404133-CDS-M-pyrifera_M_contig120951:3..5281622815728.6404133-CDS-M-pyrifera_M_contig120951:3..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120951 4..528 -
1692277541.657634-CDS-M-pyrifera_M_contig120951:3..5281692277541.657634-CDS-M-pyrifera_M_contig120951:3..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120951 4..528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120951.4306.1prot_M-pyrifera_M_contig120951.4306.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120951 4..528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120951.4306.1

>prot_M-pyrifera_M_contig120951.4306.1 ID=prot_M-pyrifera_M_contig120951.4306.1|Name=mRNA_M-pyrifera_M_contig120951.4306.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=175bp
GAIGIDAEVRNAKGTGGTVAIRTNAAIGGSTGGNPALAGIRTSTHDGATN
IILGGNVSSGGDGIRATARGTGAVTIGGTGDVTGGTDAGDDGIEINTASG
DAVVSLNGTISGDPGIIMMSSAGGDLSVLGSGDVTGTAEAIKLSTAHGDG
SIEVDRAGNIRGQSDGIHATISDKG
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mRNA from alignment at M-pyrifera_M_contig120951:4..528-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120951.4306.1 ID=mRNA_M-pyrifera_M_contig120951.4306.1|Name=mRNA_M-pyrifera_M_contig120951.4306.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=525bp|location=Sequence derived from alignment at M-pyrifera_M_contig120951:4..528- (Macrocystis pyrifera P11B4 male)
GGTGCTATAGGGATTGACGCCGAGGTGAGAAACGCCAAGGGGACCGGGGG
CACGGTTGCGATCAGAACGAATGCGGCGATTGGCGGGTCAACAGGCGGCA
ATCCGGCTCTCGCGGGAATCAGAACGTCGACGCATGATGGCGCGACCAAC
ATCATTTTGGGTGGCAATGTCAGCTCGGGGGGCGATGGCATACGTGCCAC
GGCCAGGGGAACCGGGGCTGTTACGATCGGCGGCACCGGTGATGTCACCG
GCGGCACCGATGCAGGGGATGACGGGATTGAAATCAACACGGCAAGCGGT
GATGCCGTTGTCAGCCTGAACGGGACGATTTCCGGCGATCCGGGAATAAT
AATGATGTCCTCGGCGGGGGGCGATTTGTCGGTCCTTGGCTCTGGTGACG
TAACCGGTACCGCCGAAGCCATCAAACTCTCCACGGCACATGGTGATGGC
AGCATCGAAGTCGACAGGGCCGGCAATATCCGCGGACAAAGCGACGGCAT
CCACGCAACGATCTCCGACAAGGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120951:4..528-

>mRNA_M-pyrifera_M_contig120951.4306.1 ID=mRNA_M-pyrifera_M_contig120951.4306.1|Name=mRNA_M-pyrifera_M_contig120951.4306.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1050bp|location=Sequence derived from alignment at M-pyrifera_M_contig120951:4..528- (Macrocystis pyrifera P11B4 male)
GGTGCTATAGGGATTGACGCCGAGGTGAGAAACGCCAAGGGGACCGGGGG
CACGGTTGCGATCAGAACGAATGCGGCGATTGGCGGGTCAACAGGCGGCA
ATCCGGCTCTCGCGGGAATCAGAACGTCGACGCATGATGGCGCGACCAAC
ATCATTTTGGGTGGCAATGTCAGCTCGGGGGGCGATGGCATACGTGCCAC
GGCCAGGGGAACCGGGGCTGTTACGATCGGCGGCACCGGTGATGTCACCG
GCGGCACCGATGCAGGGGATGACGGGATTGAAATCAACACGGCAAGCGGT
GATGCCGTTGTCAGCCTGAACGGGACGATTTCCGGCGATCCGGGAATAAT
AATGATGTCCTCGGCGGGGGGCGATTTGTCGGTCCTTGGCTCTGGTGACG
TAACCGGTACCGCCGAAGCCATCAAACTCTCCACGGCACATGGTGATGGC
AGCATCGAAGTCGACAGGGCCGGCAATATCCGCGGACAAAGCGACGGCAT
CCACGCAACGATCTCCGACAAGGGCGGTGCTATAGGGATTGACGCCGAGG
TGAGAAACGCCAAGGGGACCGGGGGCACGGTTGCGATCAGAACGAATGCG
GCGATTGGCGGGTCAACAGGCGGCAATCCGGCTCTCGCGGGAATCAGAAC
GTCGACGCATGATGGCGCGACCAACATCATTTTGGGTGGCAATGTCAGCT
CGGGGGGCGATGGCATACGTGCCACGGCCAGGGGAACCGGGGCTGTTACG
ATCGGCGGCACCGGTGATGTCACCGGCGGCACCGATGCAGGGGATGACGG
GATTGAAATCAACACGGCAAGCGGTGATGCCGTTGTCAGCCTGAACGGGA
CGATTTCCGGCGATCCGGGAATAATAATGATGTCCTCGGCGGGGGGCGAT
TTGTCGGTCCTTGGCTCTGGTGACGTAACCGGTACCGCCGAAGCCATCAA
ACTCTCCACGGCACATGGTGATGGCAGCATCGAAGTCGACAGGGCCGGCA
ATATCCGCGGACAAAGCGACGGCATCCACGCAACGATCTCCGACAAGGGC
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