mRNA_M-pyrifera_M_contig120942.4303.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120942.4303.1
Unique NamemRNA_M-pyrifera_M_contig120942.4303.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120942.4303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120942contigM-pyrifera_M_contig120942:2..268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size237
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815728.518586-CDS-M-pyrifera_M_contig120942:1..2381622815728.518586-CDS-M-pyrifera_M_contig120942:1..238Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120942 2..238 -
1692277541.6079476-CDS-M-pyrifera_M_contig120942:1..2381692277541.6079476-CDS-M-pyrifera_M_contig120942:1..238Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120942 2..238 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815728.5292091-UTR-M-pyrifera_M_contig120942:238..2681622815728.5292091-UTR-M-pyrifera_M_contig120942:238..268Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig120942 239..268 -
1692277541.6165469-UTR-M-pyrifera_M_contig120942:238..2681692277541.6165469-UTR-M-pyrifera_M_contig120942:238..268Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig120942 239..268 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120942.4303.1prot_M-pyrifera_M_contig120942.4303.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120942 2..238 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120942.4303.1

>prot_M-pyrifera_M_contig120942.4303.1 ID=prot_M-pyrifera_M_contig120942.4303.1|Name=mRNA_M-pyrifera_M_contig120942.4303.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
MIPPLKDTTADGKVMTRRIATTQQIEEFFEAGTDALIENATSNNRSAPTY
IRSETLLFFLRESKNRNNKDLFNTLYALL
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mRNA from alignment at M-pyrifera_M_contig120942:2..268-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120942.4303.1 ID=mRNA_M-pyrifera_M_contig120942.4303.1|Name=mRNA_M-pyrifera_M_contig120942.4303.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig120942:2..268- (Macrocystis pyrifera P11B4 male)
AGCCCGGTTCAATCCAATTGGTTTGTCTGCATGATTCCTCCCCTGAAAGA
CACCACAGCCGATGGCAAAGTGATGACGCGTCGCATCGCGACAACTCAGC
AAATTGAGGAATTTTTTGAAGCGGGAACAGATGCCCTTATTGAGAATGCT
ACCTCAAACAACCGTTCGGCGCCGACGTATATAAGGTCCGAAACGCTTCT
ATTTTTTTTACGAGAAAGCAAGAACCGAAACAATAAAGATCTTTTCAACA
CATTGTACGCCCTTCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120942:2..268-

>mRNA_M-pyrifera_M_contig120942.4303.1 ID=mRNA_M-pyrifera_M_contig120942.4303.1|Name=mRNA_M-pyrifera_M_contig120942.4303.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig120942:2..268- (Macrocystis pyrifera P11B4 male)
ATGATTCCTCCCCTGAAAGACACCACAGCCGATGGCAAAGTGATGACGCG
TCGCATCGCGACAACTCAGCAAATTGAGGAATTTTTTGAAGCGGGAACAG
ATGCCCTTATTGAGAATGCTACCTCAAACAACCGTTCGGCGCCGACGTAT
ATAAGGTCCGAAACGCTTCTATTTTTTTTACGAGAAAGCAAGAACCGAAA
CAATAAAGATCTTTTCAACACATTGTACGCCCTTCTTATGATTCCTCCCC
TGAAAGACACCACAGCCGATGGCAAAGTGATGACGCGTCGCATCGCGACA
ACTCAGCAAATTGAGGAATTTTTTGAAGCGGGAACAGATGCCCTTATTGA
GAATGCTACCTCAAACAACCGTTCGGCGCCGACGTATATAAGGTCCGAAA
CGCTTCTATTTTTTTTACGAGAAAGCAAGAACCGAAACAATAAAGATCTT
TTCAACACATTGTACGCCCTTCTT
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