mRNA_M-pyrifera_M_contig12090.4301.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12090.4301.1
Unique NamemRNA_M-pyrifera_M_contig12090.4301.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12090.4301.1 vs. uniprot
Match: D7FQ54_ECTSI (Calcium-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ54_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 4.530e-30
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 ALELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLAC 159
            ALELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLAC
Sbjct:   56 ALELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLAC 108
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BLAST of mRNA_M-pyrifera_M_contig12090.4301.1 vs. uniprot
Match: A0A7S3H521_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H521_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.980e-13
Identity = 30/51 (58.82%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 ALELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKL 153
            AL +VGI ++D +ILDRLF+M+DK+G+DQINY++F+ G+APL  GT +EK+
Sbjct:   56 ALSIVGINQNDADILDRLFTMYDKSGDDQINYRDFIVGIAPLISGTHQEKI 106
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BLAST of mRNA_M-pyrifera_M_contig12090.4301.1 vs. uniprot
Match: A0A7S2UWF2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWF2_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 5.300e-13
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 ALELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKL 153
            +LE+VGI+ESD EILDRLF+M DKTG+DQI ++EFV GLAPL  G   +K+
Sbjct:   56 SLEVVGIVESDAEILDRLFTMVDKTGDDQIPFREFVVGLAPLITGDAADKI 106
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BLAST of mRNA_M-pyrifera_M_contig12090.4301.1 vs. uniprot
Match: A0A7S2FTB5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FTB5_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.150e-12
Identity = 32/51 (62.75%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 ALELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKL 153
            AL    I+ESD+EILDRLF+M DKTG+ QIN++EF+ G++PL  GTVE+KL
Sbjct:   57 ALSRCEIVESDSEILDRLFTMLDKTGDQQINFREFICGISPLITGTVEQKL 107
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BLAST of mRNA_M-pyrifera_M_contig12090.4301.1 vs. uniprot
Match: A0A7S1C8Q8_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C8Q8_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 4.200e-12
Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 ALELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKL 153
            AL +V + ESD E+LDRLF+MFD TG+ QIN+KEFV G++ +  GT+EEKL
Sbjct:   57 ALHIVKVEESDKELLDRLFTMFDDTGDGQINFKEFVCGISTILRGTLEEKL 107
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BLAST of mRNA_M-pyrifera_M_contig12090.4301.1 vs. uniprot
Match: A0A482SV94_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SV94_9ARCH)

HSP 1 Score: 65.9 bits (159), Expect = 1.160e-11
Identity = 29/51 (56.86%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 ALELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKL 153
            AL +VG+ ++D +ILDRLF+M+DK+G+DQI YK+F+ G+APL  GT  EK+
Sbjct:   56 ALAIVGVNQNDADILDRLFTMYDKSGDDQIIYKDFIVGIAPLISGTHVEKI 106
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BLAST of mRNA_M-pyrifera_M_contig12090.4301.1 vs. uniprot
Match: F0Y4M1_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4M1_AURAN)

HSP 1 Score: 63.2 bits (152), Expect = 1.770e-11
Identity = 28/50 (56.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    4 LELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKL 153
            L+ + + E+D EIL+RLF+MFDK G+ QINY+EFV G++PL  G V +KL
Sbjct:   10 LDEISVAEADAEILERLFTMFDKMGDGQINYREFVVGVSPLARGDVPQKL 59
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BLAST of mRNA_M-pyrifera_M_contig12090.4301.1 vs. uniprot
Match: A0A6U0XRU6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0XRU6_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.200e-10
Identity = 27/51 (52.94%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 ALELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKL 153
            AL + GI+++D E+LDRLF+MFD+TG+DQ+ ++EF+ G A L    V+EKL
Sbjct:   56 ALSVAGIVDTDKEVLDRLFTMFDRTGDDQVYFREFISGFAALITSDVKEKL 106
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BLAST of mRNA_M-pyrifera_M_contig12090.4301.1 vs. uniprot
Match: A0A485LR50_9STRA (Aste57867_22968 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LR50_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.760e-9
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 ALELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLA 156
            AL+ V   ESD  ILDRLF+M DKTG+D IN +EF+ G+APL  G +  K+A
Sbjct:   55 ALDHVNFYESDRAILDRLFTMLDKTGDDAINAREFLVGIAPLVKGNLPSKIA 106
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BLAST of mRNA_M-pyrifera_M_contig12090.4301.1 vs. uniprot
Match: A0A1V9YQM0_9STRA (EF-hand domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YQM0_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.250e-9
Identity = 29/51 (56.86%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    4 LELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLA 156
            L+ V   ESD  ILDRLF+M DKTG+D INY+EF+ G+APL  G +  K+A
Sbjct:   75 LDHVNFFESDRAILDRLFTMLDKTGDDVINYQEFLVGVAPLVKGNLLSKIA 125
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12090.4301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ54_ECTSI4.530e-30100.00Calcium-binding protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3H521_9STRA1.980e-1358.82Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2UWF2_9STRA5.300e-1364.71Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2FTB5_9STRA1.150e-1262.75Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1C8Q8_9STRA4.200e-1260.78Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A482SV94_9ARCH1.160e-1156.86Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
F0Y4M1_AURAN1.770e-1156.00Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A6U0XRU6_9STRA1.200e-1052.94Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A485LR50_9STRA1.760e-955.77Aste57867_22968 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9YQM0_9STRA2.250e-956.86EF-hand domain-containing protein n=1 Tax=Achlya h... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12090contigM-pyrifera_M_contig12090:9086..9268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue3.7e-07
Seed eggNOG ortholog44056.XP_009035966.1
KEGG koko:K06268,ko:K19932
KEGG Pathwayko04010,ko04020,ko04022,ko04114,ko04218,ko04310,ko04360,ko04370,ko04380,ko04650,ko04658,ko04659,ko04660,ko04662,ko04720,ko04724,ko04921,ko04922,ko04924,ko05010,ko05014,ko05031,ko05152,ko05166,ko05167,map04010,map04020,map04022,map04114,map04218,map04310,map04360,map04370,map04380,map04650,map04658,map04659,map04660,map04662,map04720,map04724,map04921,map04922,map04924,map05010,map05014,map05031,map05152,map05166,map05167
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0044@2759
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-01_007440.1
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko04131
Exons1
Model size183
Cds size162
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815728.4356594-CDS-M-pyrifera_M_contig12090:9085..92471622815728.4356594-CDS-M-pyrifera_M_contig12090:9085..9247Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12090 9086..9247 -
1692277541.5727463-CDS-M-pyrifera_M_contig12090:9085..92471692277541.5727463-CDS-M-pyrifera_M_contig12090:9085..9247Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12090 9086..9247 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815728.4476-UTR-M-pyrifera_M_contig12090:9247..92681622815728.4476-UTR-M-pyrifera_M_contig12090:9247..9268Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12090 9248..9268 -
1692277541.5869575-UTR-M-pyrifera_M_contig12090:9247..92681692277541.5869575-UTR-M-pyrifera_M_contig12090:9247..9268Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12090 9248..9268 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12090.4301.1prot_M-pyrifera_M_contig12090.4301.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12090 9086..9247 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12090.4301.1

>prot_M-pyrifera_M_contig12090.4301.1 ID=prot_M-pyrifera_M_contig12090.4301.1|Name=mRNA_M-pyrifera_M_contig12090.4301.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
MESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLACKQNR
IFYE
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mRNA from alignment at M-pyrifera_M_contig12090:9086..9268-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12090.4301.1 ID=mRNA_M-pyrifera_M_contig12090.4301.1|Name=mRNA_M-pyrifera_M_contig12090.4301.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=183bp|location=Sequence derived from alignment at M-pyrifera_M_contig12090:9086..9268- (Macrocystis pyrifera P11B4 male)
GCACTGGAGCTAGTGGGCATTATGGAGTCGGATACTGAGATTCTGGACCG
TCTGTTCAGCATGTTTGACAAGACCGGCAACGACCAGATCAACTACAAGG
AGTTCGTCGGCGGTCTCGCCCCCCTCTGCCACGGGACTGTAGAGGAGAAG
CTCGCGTGTAAGCAAAACAGGATATTTTATGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12090:9086..9268-

>mRNA_M-pyrifera_M_contig12090.4301.1 ID=mRNA_M-pyrifera_M_contig12090.4301.1|Name=mRNA_M-pyrifera_M_contig12090.4301.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig12090:9086..9268- (Macrocystis pyrifera P11B4 male)
ATGGAGTCGGATACTGAGATTCTGGACCGTCTGTTCAGCATGTTTGACAA
GACCGGCAACGACCAGATCAACTACAAGGAGTTCGTCGGCGGTCTCGCCC
CCCTCTGCCACGGGACTGTAGAGGAGAAGCTCGCGTGTAAGCAAAACAGG
ATATTTTATGAGATGGAGTCGGATACTGAGATTCTGGACCGTCTGTTCAG
CATGTTTGACAAGACCGGCAACGACCAGATCAACTACAAGGAGTTCGTCG
GCGGTCTCGCCCCCCTCTGCCACGGGACTGTAGAGGAGAAGCTCGCGTGT
AAGCAAAACAGGATATTTTATGAG
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