mRNA_M-pyrifera_M_contig12087.4298.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12087.4298.1
Unique NamemRNA_M-pyrifera_M_contig12087.4298.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12087.4298.1 vs. uniprot
Match: D7FKW0_ECTSI (ATG13 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKW0_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 4.820e-16
Identity = 43/67 (64.18%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:  304 VLHWPSPEQGHGYAHKRVNKPLGQGPAPFLTPGPHRHKLVPGGRQGPDVNMEPLDLGPNADVDARDP 504
            ++HWPSPE GHGYA KR +    QGPAPFLTPGPHR +  P GR   DV MEPL+LGPNA++ AR P
Sbjct:  298 MMHWPSPELGHGYAEKRTHIGPRQGPAPFLTPGPHRGR--PLGRH--DVMMEPLELGPNAEIHARGP 360
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12087.4298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKW0_ECTSI4.820e-1664.18ATG13 domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12087contigM-pyrifera_M_contig12087:8152..8875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue1.2e-14
Seed eggNOG ortholog2880.D7FKW0
Preferred nameATG13
KEGG koko:K08331
KEGG Pathwayko04136,ko04138,ko04140,ko04211,map04136,map04138,map04140,map04211
Hectar predicted targeting categoryother localisation
GOsGO:0000045,GO:0000407,GO:0000422,GO:0001932,GO:0001934,GO:0002790,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005776,GO:0005829,GO:0006810,GO:0006914,GO:0006996,GO:0007005,GO:0007033,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009306,GO:0009893,GO:0009987,GO:0010562,GO:0010604,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016236,GO:0016237,GO:0019207,GO:0019220,GO:0019222,GO:0019887,GO:0019898,GO:0022411,GO:0022607,GO:0030234,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032147,GO:0032258,GO:0032268,GO:0032270,GO:0032940,GO:0032991,GO:0033036,GO:0033365,GO:0033674,GO:0034497,GO:0034613,GO:0034727,GO:0042325,GO:0042327,GO:0042886,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043549,GO:0044085,GO:0044093,GO:0044237,GO:0044248,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0044804,GO:0044805,GO:0045184,GO:0045859,GO:0045860,GO:0045937,GO:0046903,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051641,GO:0060255,GO:0061695,GO:0061726,GO:0061919,GO:0065007,GO:0065009,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0072665,GO:0080090,GO:0098772,GO:1902494,GO:1902554,GO:1902911,GO:1903008,GO:1905037,GO:1990234,GO:1990316
EggNOG free text desc.process utilizing autophagic mechanism
EggNOG OGsKOG4573@1,KOG4573@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04131
Exons2
Model size528
Cds size528
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815728.1859546-CDS-M-pyrifera_M_contig12087:8151..82391622815728.1859546-CDS-M-pyrifera_M_contig12087:8151..8239Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12087 8152..8239 -
1692277541.4408576-CDS-M-pyrifera_M_contig12087:8151..82391692277541.4408576-CDS-M-pyrifera_M_contig12087:8151..8239Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12087 8152..8239 -
1622815728.1989062-CDS-M-pyrifera_M_contig12087:8435..88751622815728.1989062-CDS-M-pyrifera_M_contig12087:8435..8875Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12087 8436..8875 -
1692277541.4555428-CDS-M-pyrifera_M_contig12087:8435..88751692277541.4555428-CDS-M-pyrifera_M_contig12087:8435..8875Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12087 8436..8875 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12087.4298.1prot_M-pyrifera_M_contig12087.4298.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12087 8152..8875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12087.4298.1

>prot_M-pyrifera_M_contig12087.4298.1 ID=prot_M-pyrifera_M_contig12087.4298.1|Name=mRNA_M-pyrifera_M_contig12087.4298.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=176bp
AVAAASGGETSHEQWPRLATMQEDGAMAAGTGTDGSDGYSSSRVAGLEGR
RFCTDVTGGLEIALPSDSGAAIDAHSRINSQHHRDYDAGTVDKANPGQGP
DVLHWPSPEQGHGYAHKRVNKPLGQGPAPFLTPGPHRHKLVPGGRQGPDV
NMEPLDLGPNADVDARDPCVRAVAG*
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mRNA from alignment at M-pyrifera_M_contig12087:8152..8875-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12087.4298.1 ID=mRNA_M-pyrifera_M_contig12087.4298.1|Name=mRNA_M-pyrifera_M_contig12087.4298.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=724bp|location=Sequence derived from alignment at M-pyrifera_M_contig12087:8152..8875- (Macrocystis pyrifera P11B4 male)
GCGGTGGCGGCGGCATCTGGAGGAGAAACGAGCCACGAGCAGTGGCCACG
ACTAGCCACTATGCAAGAGGACGGAGCCATGGCGGCAGGCACTGGTACCG
ATGGGTCCGATGGGTATAGCTCTAGCCGAGTTGCCGGATTGGAAGGGCGA
CGATTTTGCACCGACGTGACGGGGGGTCTCGAGATTGCGCTTCCCTCTGA
TTCGGGGGCAGCAATCGATGCGCATTCCCGAATAAATTCGCAGCACCACC
GCGACTATGATGCTGGGACGGTCGACAAAGCAAACCCCGGACAAGGGCCA
GATGTGCTGCACTGGCCGTCTCCAGAGCAAGGCCATGGGTACGCCCATAA
GCGTGTCAACAAACCTCTTGGGCAGGGTCCGGCTCCATTTCTGACGCCGG
GACCTCATCGGCATAAACTGGTGCCAGGTGGACGGCAAGGGTGAGGCCTT
ACCCGGGCATTTTTATTGTTGTATTATGATGCTGTTAATGTTGTGCCGAG
TGGTGAGCTGAAAATTGAATTGGTCCGGCGATTAGTGACTGTGCATAGTC
GGGCAAACGTCCGTGTCGTTATTTTGTGTGACGTCACGTTAGTCTTACAC
AGTTTTTTGTGTATTGATGCGTGTTTGCTCGACCAGGCCCGACGTGAACA
TGGAGCCGCTAGACTTGGGGCCTAATGCTGACGTGGACGCGCGAGATCCT
TGTGTGCGAGCTGTTGCTGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12087:8152..8875-

>mRNA_M-pyrifera_M_contig12087.4298.1 ID=mRNA_M-pyrifera_M_contig12087.4298.1|Name=mRNA_M-pyrifera_M_contig12087.4298.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1056bp|location=Sequence derived from alignment at M-pyrifera_M_contig12087:8152..8875- (Macrocystis pyrifera P11B4 male)
GCGGTGGCGGCGGCATCTGGAGGAGAAACGAGCCACGAGCAGTGGCCACG
ACTAGCCACTATGCAAGAGGACGGAGCCATGGCGGCAGGCACTGGTACCG
ATGGGTCCGATGGGTATAGCTCTAGCCGAGTTGCCGGATTGGAAGGGCGA
CGATTTTGCACCGACGTGACGGGGGGTCTCGAGATTGCGCTTCCCTCTGA
TTCGGGGGCAGCAATCGATGCGCATTCCCGAATAAATTCGCAGCACCACC
GCGACTATGATGCTGGGACGGTCGACAAAGCAAACCCCGGACAAGGGCCA
GATGTGCTGCACTGGCCGTCTCCAGAGCAAGGCCATGGGTACGCCCATAA
GCGTGTCAACAAACCTCTTGGGCAGGGTCCGGCTCCATTTCTGACGCCGG
GACCTCATCGGCATAAACTGGTGCCAGGTGGACGGCAAGGGCGGTGGCGG
CGGCATCTGGAGGAGAAACGAGCCACGAGCAGTGGCCACGACTAGCCACT
ATGCAAGAGGACGGAGCCATGGCGGCAGGCACTGGTACCGATGGGTCCGA
TGGGTATAGCTCTAGCCGAGTTGCCGGATTGGAAGGGCGACGATTTTGCA
CCGACGTGACGGGGGGTCTCGAGATTGCGCTTCCCTCTGATTCGGGGGCA
GCAATCGATGCGCATTCCCGAATAAATTCGCAGCACCACCGCGACTATGA
TGCTGGGACGGTCGACAAAGCAAACCCCGGACAAGGGCCAGATGTGCTGC
ACTGGCCGTCTCCAGAGCAAGGCCATGGGTACGCCCATAAGCGTGTCAAC
AAACCTCTTGGGCAGGGTCCGGCTCCATTTCTGACGCCGGGACCTCATCG
GCATAAACTGGTGCCAGGTGGACGGCAAGGGCCCGACGTGAACATGGAGC
CGCTAGACTTGGGGCCTAATGCTGACGTGGACGCGCGAGATCCTTGTGTG
CGAGCTGTTGCTGGGTGAGCCCGACGTGAACATGGAGCCGCTAGACTTGG
GGCCTAATGCTGACGTGGACGCGCGAGATCCTTGTGTGCGAGCTGTTGCT
GGGTGA
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