mRNA_M-pyrifera_M_contig12087.4297.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12087.4297.1
Unique NamemRNA_M-pyrifera_M_contig12087.4297.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12087.4297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12087contigM-pyrifera_M_contig12087:6476..7284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size497
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12087.4297.1prot_M-pyrifera_M_contig12087.4297.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12087 6547..7284 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815728.121071-UTR-M-pyrifera_M_contig12087:6475..65461622815728.121071-UTR-M-pyrifera_M_contig12087:6475..6546Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12087 6476..6546 -
1692277541.412161-UTR-M-pyrifera_M_contig12087:6475..65461692277541.412161-UTR-M-pyrifera_M_contig12087:6475..6546Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12087 6476..6546 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815728.1358404-CDS-M-pyrifera_M_contig12087:6546..67921622815728.1358404-CDS-M-pyrifera_M_contig12087:6546..6792Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12087 6547..6792 -
1692277541.4224205-CDS-M-pyrifera_M_contig12087:6546..67921692277541.4224205-CDS-M-pyrifera_M_contig12087:6546..6792Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12087 6547..6792 -
1622815728.147749-CDS-M-pyrifera_M_contig12087:7104..72841622815728.147749-CDS-M-pyrifera_M_contig12087:7104..7284Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12087 7105..7284 -
1692277541.4313006-CDS-M-pyrifera_M_contig12087:7104..72841692277541.4313006-CDS-M-pyrifera_M_contig12087:7104..7284Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12087 7105..7284 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12087.4297.1

>prot_M-pyrifera_M_contig12087.4297.1 ID=prot_M-pyrifera_M_contig12087.4297.1|Name=mRNA_M-pyrifera_M_contig12087.4297.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
MLVLFRLQPPGHGGRVASNNVEVFARSVGRRNSDRHCSAEYVAPCAPDEF
RCLEPPGSLEGDVDRKEEALQEPHLVGFHVQDKHLRDGILGQRGLVSVLI
SIRQAVIQTHGCQDSAAVCDAVCLRARTPPAYRSSSERVFC*
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mRNA from alignment at M-pyrifera_M_contig12087:6476..7284-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12087.4297.1 ID=mRNA_M-pyrifera_M_contig12087.4297.1|Name=mRNA_M-pyrifera_M_contig12087.4297.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=809bp|location=Sequence derived from alignment at M-pyrifera_M_contig12087:6476..7284- (Macrocystis pyrifera P11B4 male)
ATGCTTGTTTTGTTCAGGCTGCAGCCGCCAGGACATGGTGGCCGCGTGGC
GTCGAATAATGTGGAGGTGTTTGCTCGCAGCGTGGGGAGGAGGAACTCTG
ACCGACATTGCTCGGCAGAATATGTCGCTCCCTGCGCACCTGACGAGTTT
CGCTGCCTCGAGCCGCCCGGCAGCCTTGAGGTATACCCGATTAATGGTGC
AAAGGTACTCGACAATTTCGAAGAGCAGCAGATAATACGGGTTTACTGAT
GGACACGATTTTGGGGAGGGTCTTGTAAAAGCAGCCATCCACTTTCTTCG
GAGGTTTTGCGAATCACAACCTCAACGATAATTATGGTTACAGTTGATTG
AGAAATTCCAATTACCCTGCTGCACTTGAAACGGCGTGGGACTTTGTGCC
GTACTATTGATAGTATCTGTCATTGCCGAGCACGCGTTGTGAAGGCGTTG
ATGTTAATGTTGACGTTGACATACTGGTGTGGCGGTGTACAGGGCGACGT
TGACCGAAAAGAAGAAGCTCTGCAGGAGCCACACCTAGTTGGCTTCCACG
TGCAAGACAAGCATTTACGGGACGGCATTTTGGGGCAACGAGGTTTGGTG
AGCGTTCTGATTTCGATTCGTCAAGCCGTGATACAAACCCACGGGTGTCA
GGACTCTGCCGCCGTTTGTGATGCCGTTTGTTTGAGAGCTCGTACTCCTC
CCGCGTATCGTTCGAGTAGTGAACGAGTTTTTTGTTGACGTATGCCTGCT
GACGTTACATTGTACTTGTACTTCAGTATGTAACCATGCCCGTTCGCTCA
TCGTGAGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12087:6476..7284-

>mRNA_M-pyrifera_M_contig12087.4297.1 ID=mRNA_M-pyrifera_M_contig12087.4297.1|Name=mRNA_M-pyrifera_M_contig12087.4297.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig12087:6476..7284- (Macrocystis pyrifera P11B4 male)
ATGCTTGTTTTGTTCAGGCTGCAGCCGCCAGGACATGGTGGCCGCGTGGC
GTCGAATAATGTGGAGGTGTTTGCTCGCAGCGTGGGGAGGAGGAACTCTG
ACCGACATTGCTCGGCAGAATATGTCGCTCCCTGCGCACCTGACGAGTTT
CGCTGCCTCGAGCCGCCCGGCAGCCTTGAGATGCTTGTTTTGTTCAGGCT
GCAGCCGCCAGGACATGGTGGCCGCGTGGCGTCGAATAATGTGGAGGTGT
TTGCTCGCAGCGTGGGGAGGAGGAACTCTGACCGACATTGCTCGGCAGAA
TATGTCGCTCCCTGCGCACCTGACGAGTTTCGCTGCCTCGAGCCGCCCGG
CAGCCTTGAGGGCGACGTTGACCGAAAAGAAGAAGCTCTGCAGGAGCCAC
ACCTAGTTGGCTTCCACGTGCAAGACAAGCATTTACGGGACGGCATTTTG
GGGCAACGAGGTTTGGTGAGCGTTCTGATTTCGATTCGTCAAGCCGTGAT
ACAAACCCACGGGTGTCAGGACTCTGCCGCCGTTTGTGATGCCGTTTGTT
TGAGAGCTCGTACTCCTCCCGCGTATCGTTCGAGTAGTGAACGAGTTTTT
TGTTGAGGCGACGTTGACCGAAAAGAAGAAGCTCTGCAGGAGCCACACCT
AGTTGGCTTCCACGTGCAAGACAAGCATTTACGGGACGGCATTTTGGGGC
AACGAGGTTTGGTGAGCGTTCTGATTTCGATTCGTCAAGCCGTGATACAA
ACCCACGGGTGTCAGGACTCTGCCGCCGTTTGTGATGCCGTTTGTTTGAG
AGCTCGTACTCCTCCCGCGTATCGTTCGAGTAGTGAACGAGTTTTTTGTT
GA
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