prot_M-pyrifera_M_contig120820.4284.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig120820.4284.1
Unique Nameprot_M-pyrifera_M_contig120820.4284.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length60
Homology
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BLAST of mRNA_M-pyrifera_M_contig120820.4284.1 vs. uniprot
Match: A0A7Y2NFL5_9ACTN (Helix-turn-helix domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y2NFL5_9ACTN)

HSP 1 Score: 63.5 bits (153), Expect = 6.160e-12
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 0 
Query:    9 IESLAQQIGVSRRTVHRWIIHGIPADQADRAAIAIGTHPACLWPDHWY 56
            +  LA+Q+GV+ RTV RW + G+   QADRAA+A+G HPA +W DHWY
Sbjct:   25 VAQLARQVGVATRTVWRWQLRGLTDTQADRAAVALGLHPANIW-DHWY 71
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BLAST of mRNA_M-pyrifera_M_contig120820.4284.1 vs. uniprot
Match: A0A346Y4T3_9ACTN (Uncharacterized protein n=1 Tax=Euzebya pacifica TaxID=1608957 RepID=A0A346Y4T3_9ACTN)

HSP 1 Score: 56.6 bits (135), Expect = 9.220e-9
Identity = 22/42 (52.38%), Postives = 32/42 (76.19%), Query Frame = 0 
Query:   11 SLAQQIGVSRRTVHRWIIHGIPADQADRAAIAIGTHPACLWP 52
            +LA+++GV RR VHRW+  G+   +AD AA+A+G HPA +WP
Sbjct:   60 NLARRVGVDRRNVHRWVHDGLSYIRADEAAVALGLHPALVWP 101
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120820.4284.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7Y2NFL5_9ACTN6.160e-1256.25Helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A346Y4T3_9ACTN9.220e-952.38Uncharacterized protein n=1 Tax=Euzebya pacifica T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.260.40coord: 1..58
e-value: 5.7E-6
score: 28.3
IPR013196Helix-turn-helix, type 11PFAMPF08279HTH_11coord: 8..25
e-value: 1.3E-4
score: 21.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120820contigM-pyrifera_M_contig120820:198..377 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120820.4284.1mRNA_M-pyrifera_M_contig120820.4284.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig120820 198..377 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig120820.4284.1 ID=prot_M-pyrifera_M_contig120820.4284.1|Name=mRNA_M-pyrifera_M_contig120820.4284.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=60bp
AIEAQASTIESLAQQIGVSRRTVHRWIIHGIPADQADRAAIAIGTHPACL
WPDHWYTLA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013196HTH_11