mRNA_M-pyrifera_M_contig120818.4283.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig120818.4283.1 vs. uniprot
Match: A0A5A8CVJ8_CAFRO (Double-strand break repair protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CVJ8_CAFRO) HSP 1 Score: 176 bits (445), Expect = 3.430e-49 Identity = 82/150 (54.67%), Postives = 106/150 (70.67%), Query Frame = 1
Query: 10 RSMEILRKYVMGSRPVTFELLSEPSHHFGAGTSFCLPNFEDPHYNVGLPIFSIHGNHDHPTRDGNGSSLSAMDILSVANLVNFFGSHESADRIDVRPLLLRKGRTRVALYGLGSMRDERLHALLRKGNVRFHRPADSSSWFHILLIHQNR 459
R + LR + MGSRP+ FELLS+ + HFG+ F N+ DPH+NV +P+F IHGNHD PT D +SL A+ +L AN+VN+FG S D I + PLL RKG+T++ALYGLG+MRDERLHA VRF RP ++ SW ++LLIHQNR
Sbjct: 89 RVLSALRTHCMGSRPIRFELLSDQARHFGSEGKFRRVNYMDPHFNVDMPVFCIHGNHDDPTIDRGDASLGALHVLEAANMVNYFGRQRSVDDIVLEPLLFRKGKTQMALYGLGNMRDERLHAAFMADKVRFMRPTNAGSWVNVLLIHQNR 238
BLAST of mRNA_M-pyrifera_M_contig120818.4283.1 vs. uniprot
Match: A0A5A8DGN7_CAFRO (Double-strand break repair protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DGN7_CAFRO) HSP 1 Score: 176 bits (445), Expect = 3.170e-48 Identity = 82/150 (54.67%), Postives = 106/150 (70.67%), Query Frame = 1
Query: 10 RSMEILRKYVMGSRPVTFELLSEPSHHFGAGTSFCLPNFEDPHYNVGLPIFSIHGNHDHPTRDGNGSSLSAMDILSVANLVNFFGSHESADRIDVRPLLLRKGRTRVALYGLGSMRDERLHALLRKGNVRFHRPADSSSWFHILLIHQNR 459
R + LR + MGSRP+ FELLS+ + HFG+ F N+ DPH+NV +P+F IHGNHD PT D +SL A+ +L AN+VN+FG S D I + PLL RKG+T++ALYGLG+MRDERLHA VRF RP ++ SW ++LLIHQNR
Sbjct: 89 RVLSALRTHCMGSRPIRFELLSDQARHFGSEGKFRRVNYMDPHFNVDMPVFCIHGNHDDPTIDRGDASLGALHVLEAANMVNYFGRQRSVDDIVLEPLLFRKGKTQMALYGLGNMRDERLHAAFMADKVRFMRPTNAGSWVNVLLIHQNR 238
BLAST of mRNA_M-pyrifera_M_contig120818.4283.1 vs. uniprot
Match: UPI001B88D588 (LOW QUALITY PROTEIN: double-strand break repair protein MRE11-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88D588) HSP 1 Score: 163 bits (413), Expect = 8.880e-47 Identity = 83/158 (52.53%), Postives = 111/158 (70.25%), Query Frame = 1
Query: 1 VFCRSMEILRKYVMGSRPVTFELLSEPSHHFGAGTS---FCLPNFEDPHYNVGLPIFSIHGNHDHPTRDGNGSSLSAMDILSVANLVNFFGSHESADRIDVRPLLLRKGRTRVALYGLGSMRDERLHALLRKGNVRFHRPAD-SSSWFHILLIHQNRA 462
V R+ME+LR++ MGSRP E S+PS +F + F N+EDP++NV +P+FSIHGNHD PT D LS MD+LS+AN+VN+FG ++I + PLLL+KG TR+ALYGLGS+RDERL+ R GNV+F RP SWF++ ++HQNRA
Sbjct: 65 VIYRTMELLRQFCMGSRPCPIEFRSDPSINFISRMHPFXFSTVNYEDPNFNVSIPVFSIHGNHDDPTGD---HGLSTMDLLSMANVVNYFGKVSDVEKITLSPLLLQKGNTRLALYGLGSIRDERLNRTFRHGNVKFLRPKKXEKSWFNLFVVHQNRA 219
BLAST of mRNA_M-pyrifera_M_contig120818.4283.1 vs. uniprot
Match: A0A1X7V165_AMPQE (Double-strand break repair protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7V165_AMPQE) HSP 1 Score: 167 bits (424), Expect = 1.410e-45 Identity = 84/156 (53.85%), Postives = 115/156 (73.72%), Query Frame = 1
Query: 1 VFCRSMEILRKYVMGSRPVTFELLSEPSHHFGAGTSFCLPNFEDPHYNVGLPIFSIHGNHDHPTRDGNGSSLSAMDILSVANLVNFFGSHESADRIDVRPLLLRKGRTRVALYGLGSMRDERLHALLRKGNVRFHRPA-DSSSWFHILLIHQNRAR 465
V R+ME+LR++ +GSRP E S+PS +F + SF N+EDP+YN+G+P+FSIHGNHD PT D N LS++DILSV+NLVN+FG + + I + PLLL+KG T +ALYGLGS+RDERL+ + R G V+F +P D WF++ +IHQNR+R
Sbjct: 80 VIFRTMELLRQFCIGSRPCPIEFRSDPSINFHS--SFPNVNYEDPNYNIGMPVFSIHGNHDDPTGDHN---LSSLDILSVSNLVNYFGKAKDVENITISPLLLQKGSTMLALYGLGSIRDERLNRMFRLGKVKFLQPKEDQKKWFNLFVIHQNRSR 230
BLAST of mRNA_M-pyrifera_M_contig120818.4283.1 vs. uniprot
Match: T0R633_SAPDV (Double-strand break repair protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0R633_SAPDV) HSP 1 Score: 167 bits (424), Expect = 1.550e-45 Identity = 83/156 (53.21%), Postives = 112/156 (71.79%), Query Frame = 1
Query: 10 RSMEILRKYVMGSRPVTFELLSEPSHHFGAGTSFCLPNFEDPHYNVGLPIFSIHGNHDHPTRDGNGSSLSAMDILSVANLVNFFGSHESADRIDVRPLLLRKGRTRVALYGLGSMRDERLHALLRKGNVRFHRPADS-SSWFHILLIHQNRARSGR 474
R+M +LR Y +G + F++LS+ S +F +F + N+EDP+ NV LPIFSIHGNHD PT + G SL+A+D+LS ANLVN+FG + D I+V P+LL KG T++A+YGLG+MRDERLH + KG VRF RP +S +WF I ++HQNR GR
Sbjct: 70 RTMSLLRHYCLGDGNINFQILSDQSLNF---PNFGVANYEDPNVNVRLPIFSIHGNHDDPTGEA-GRSLAALDLLSAANLVNYFGKSDRVDEIEVFPILLEKGATKIAIYGLGNMRDERLHRMFAKGQVRFRRPEESPDAWFSIFVVHQNRDNRGR 221
BLAST of mRNA_M-pyrifera_M_contig120818.4283.1 vs. uniprot
Match: A0A7S3ZYR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZYR3_9STRA) HSP 1 Score: 166 bits (420), Expect = 1.700e-45 Identity = 81/150 (54.00%), Postives = 111/150 (74.00%), Query Frame = 1
Query: 10 RSMEILRKYVMGSRPVTFELLSEPSHHFGAGTSFCLPNFEDPHYNVGLPIFSIHGNHDHPTRDGNGSSLSAMDILSVANLVNFFGSHESADRIDVRPLLLRKGRTRVALYGLGSMRDERLHALLRKGNVRFHRPADSSSWFHILLIHQNR 459
++M +LR+Y + V FE+LS+ +F N+EDPH +VGLPIFSIHGNHD PTR+G +L+A+D+LSVAN++N+FG E ADR++V P+LLRKG TRVALYGLG+MRDERL+ + ++ VRF RP D + +F I ++HQNR
Sbjct: 139 KTMSLLRRYALSDAAVGFEVLSDQEANFRQSV-----NYEDPHVSVGLPIFSIHGNHDDPTREGGVEALAALDLLSVANMLNYFGRQEHADRVEVSPVLLRKGNTRVALYGLGNMRDERLNRMWQQKRVRFLRPRDGT-YFSIFVLHQNR 282
BLAST of mRNA_M-pyrifera_M_contig120818.4283.1 vs. uniprot
Match: A0A024TZL5_9STRA (Double-strand break repair protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TZL5_9STRA) HSP 1 Score: 167 bits (424), Expect = 2.090e-45 Identity = 85/156 (54.49%), Postives = 112/156 (71.79%), Query Frame = 1
Query: 10 RSMEILRKYVMGSRPVTFELLSEPSHHFGAGTSFCLPNFEDPHYNVGLPIFSIHGNHDHPTRDGNGSSLSAMDILSVANLVNFFGSHESADRIDVRPLLLRKGRTRVALYGLGSMRDERLHALLRKGNVRFHRPADS-SSWFHILLIHQNRARSGR 474
R+M ILR Y +G + F++LS+ S +F +F N+EDP+ NV LPIFSIHGNHD PT + G SL+A+D+LS ANLVN+FG + D I+V P+LL KG T+VA+YGLG+MRDERLH + +G+VRF RP +S SWF I ++HQNR GR
Sbjct: 81 RTMSILRTYCLGDGTINFQILSDQSLNF---PNFGQVNYEDPNINVRLPIFSIHGNHDDPTGEA-GRSLAALDLLSAANLVNYFGKSDRVDEIEVFPILLEKGSTKVAIYGLGNMRDERLHRMFAQGHVRFRRPEESPDSWFSIFVVHQNRDNRGR 232
BLAST of mRNA_M-pyrifera_M_contig120818.4283.1 vs. uniprot
Match: A0A0P1AC17_PLAHL (Dna repair protein partial n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AC17_PLAHL) HSP 1 Score: 168 bits (425), Expect = 2.230e-45 Identity = 85/161 (52.80%), Postives = 116/161 (72.05%), Query Frame = 1
Query: 13 SMEILRKYVMGSRPVTFELLSEPSHHFGAGTSFCLPNFEDPHYNVGLPIFSIHGNHDHPTRDGNGS---SLSAMDILSVANLVNFFGSHESADRIDVRPLLLRKGRTRVALYGLGSMRDERLHALLRKGNVRFHRPAD-SSSWFHILLIHQNRARSGRSSR 483
+M +LR Y MG V F+++S+ S +F +F + NFEDP+YNV LPIFSIHGNHD P+R+G G+ SL+A+D+LS ANL+N+FG E D ++V P+LL KG TRVA+YGLG+MRDERL+ + +G V F RPA+ + WF I ++HQNR GR S+
Sbjct: 78 TMRLLRAYCMGDGAVNFQVVSDQSVNF---PNFGVVNFEDPNYNVELPIFSIHGNHDDPSREGGGTATQSLAALDLLSAANLINYFGKSEKVDAVEVFPVLLTKGNTRVAVYGLGNMRDERLNRMFAQGKVVFRRPAEHAEEWFSIFVVHQNRDDKGRGSK 235
BLAST of mRNA_M-pyrifera_M_contig120818.4283.1 vs. uniprot
Match: UPI000BA81F2F (double-strand break repair protein MRE11-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA81F2F) HSP 1 Score: 160 bits (406), Expect = 2.680e-45 Identity = 77/153 (50.33%), Postives = 107/153 (69.93%), Query Frame = 1
Query: 16 MEILRKYVMGSRPVTFELLSEPSHHFGAGTSFCLPNFEDPHYNVGLPIFSIHGNHDHPTRDGNGSSLSAMDILSVANLVNFFGSHESADRIDVRPLLLRKGRTRVALYGLGSMRDERLHALLRKGNVRFHRPA-DSSSWFHILLIHQNRARSG 471
M++LRKY MG +PV E LS+ S +F SF N+EDP+ N+ P+FSIHGNHD P GN L ++D+LSV+ L+N+FG D + + PLL++KG T++ALYGLGS+RDERLH + R+G V RP DS +WF++ ++HQNR+R G
Sbjct: 75 MQLLRKYCMGDKPVNIEFLSDQSENFKYN-SFPFVNYEDPNLNISTPVFSIHGNHDDPAGQGN---LCSLDLLSVSGLINYFGKCTDLDNVKISPLLMQKGETKLALYGLGSIRDERLHRMFREGKVSMLRPREDSETWFNLFVVHQNRSRHG 223
BLAST of mRNA_M-pyrifera_M_contig120818.4283.1 vs. uniprot
Match: W4FU37_9STRA (Double-strand break repair protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FU37_9STRA) HSP 1 Score: 167 bits (423), Expect = 3.000e-45 Identity = 84/156 (53.85%), Postives = 112/156 (71.79%), Query Frame = 1
Query: 10 RSMEILRKYVMGSRPVTFELLSEPSHHFGAGTSFCLPNFEDPHYNVGLPIFSIHGNHDHPTRDGNGSSLSAMDILSVANLVNFFGSHESADRIDVRPLLLRKGRTRVALYGLGSMRDERLHALLRKGNVRFHRPADS-SSWFHILLIHQNRARSGR 474
R+M ILR Y +G + F++LS+ S +F +F N+EDP+ NV LPIFSIHGNHD PT + G SL+A+D+LS ANLVN+FG + D I+V P+LL KG T++A+YGLG+MRDERLH + +G+VRF RP +S SWF I ++HQNR GR
Sbjct: 81 RTMSILRTYCLGDGTINFQILSDQSLNF---PNFGQVNYEDPNINVRLPIFSIHGNHDDPTGEA-GRSLAALDLLSAANLVNYFGKSDRVDEIEVFPILLEKGSTKIAIYGLGNMRDERLHRMFAQGHVRFRRPEESPDSWFSIFVVHQNRDNRGR 232 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120818.4283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig120818.4283.1 >prot_M-pyrifera_M_contig120818.4283.1 ID=prot_M-pyrifera_M_contig120818.4283.1|Name=mRNA_M-pyrifera_M_contig120818.4283.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=156bp MEILRKYVMGSRPVTFELLSEPSHHFGAGTSFCLPNFEDPHYNVGLPIFSback to top mRNA from alignment at M-pyrifera_M_contig120818:7..489- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig120818.4283.1 ID=mRNA_M-pyrifera_M_contig120818.4283.1|Name=mRNA_M-pyrifera_M_contig120818.4283.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=483bp|location=Sequence derived from alignment at M-pyrifera_M_contig120818:7..489- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig120818:7..489- >mRNA_M-pyrifera_M_contig120818.4283.1 ID=mRNA_M-pyrifera_M_contig120818.4283.1|Name=mRNA_M-pyrifera_M_contig120818.4283.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=936bp|location=Sequence derived from alignment at M-pyrifera_M_contig120818:7..489- (Macrocystis pyrifera P11B4 male)back to top |