mRNA_M-pyrifera_M_contig1208.4279.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1208.4279.1
Unique NamemRNA_M-pyrifera_M_contig1208.4279.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig1208.4279.1 vs. uniprot
Match: A0A6H5KKG1_9PHAE (VPS13_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKG1_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 1.970e-62
Identity = 113/124 (91.13%), Postives = 120/124 (96.77%), Query Frame = 1
Query:    1 VFLALDKSPLLFRPVSLRGVLARPDQIAEQIASNYAMDALLRSLAVVGSLEALGSPTTLLSAWGKGVYDLFAMPIRALPQGPTSTVRATFRGLSSLLRHASAGTLSSVSGVTNALSRNLRSRGG 372
            VFLALDKSPLLFRPVSLRGVLARPD+IAEQIASNYA+DALLRSLAVVGSLEALGSPTTLLS WGKGVYDLFAMPI+A+PQGP+ST RATFRG+SSLLRHASAGTLSSVSGV+NALSRNL  RGG
Sbjct: 4356 VFLALDKSPLLFRPVSLRGVLARPDEIAEQIASNYAVDALLRSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPIKAMPQGPSSTFRATFRGVSSLLRHASAGTLSSVSGVSNALSRNLGGRGG 4479          
BLAST of mRNA_M-pyrifera_M_contig1208.4279.1 vs. uniprot
Match: A0A7S1G5R3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G5R3_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.040e-19
Identity = 56/124 (45.16%), Postives = 79/124 (63.71%), Query Frame = 1
Query:    4 FLALDKSPLLFRPVSLRGVLARPDQIAEQIASNYAMDALLRSLAVVGSLEALGSPTTLLSAWGKGVYDLFAMPIRALPQ-----GPTSTVRATF-RGLSSLLRHASAGTLSSVSGVTNALSRNL 357
            FL++D++PL    VSL  V A P+++A ++ +NY  DA+LRS A+VGSLE LG+PT  +   G G+ DLFA+P+ A+       G  + +   F RG  SL  H + G LSSV+G + ALSRNL
Sbjct:   37 FLSVDEAPLALASVSLDCVRATPERLARELLANYIADAILRSPALVGSLELLGNPTRFMRGLGSGLRDLFALPMLAIRDREKGVGSGAGILTGFARGWGSLAAHVAEGALSSVAGFSAALSRNL 160          
BLAST of mRNA_M-pyrifera_M_contig1208.4279.1 vs. uniprot
Match: A0A0H5QH82_9EUKA (VPS13_C domain-containing protein n=2 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QH82_9EUKA)

HSP 1 Score: 92.8 bits (229), Expect = 1.880e-19
Identity = 46/118 (38.98%), Postives = 79/118 (66.95%), Query Frame = 1
Query:    4 FLALDKSPLLFRPVSLRGVLARPDQIAEQIASNYAMDALLRSLAVVGSLEALGSPTTLLSAWGKGVYDLFAMPIRALPQGPTSTVRATFRGLSSLLRHASAGTLSSVSGVTNALSRNL 357
            +L     P+    V L+ VL+  D++ +++++NY  D ++ S  + GS++ LG+PT L+S++ KG+  L  +P RAL +GP +   AT +G+ SLL++ S GTL+SVSG T++L+RN+
Sbjct: 1728 YLGCQSLPVRLSAVELKSVLSSSDRLIKELSANYLADVIMISPLLFGSMDLLGNPTQLISSFSKGIQGLVRLPSRALTRGPRALAWATLQGIGSLLQNISEGTLTSVSGFTHSLARNV 1845          
BLAST of mRNA_M-pyrifera_M_contig1208.4279.1 vs. uniprot
Match: R7TEM8_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TEM8_CAPTE)

HSP 1 Score: 88.2 bits (217), Expect = 7.920e-18
Identity = 51/119 (42.86%), Postives = 71/119 (59.66%), Query Frame = 1
Query:    1 VFLALDKSPLLFRPVSLRGVLARPDQIAEQIASNYAMDALLRSLAVVGSLEALGSPTTLLSAWGKGVYDLFAMPIRALPQGPTSTVRATFRGLSSLLRHASAGTLSSVSGVTNALSRNL 357
            VFLA D +PL F     + +     Q+A  +   YA  AL R+  VVGSLE LG+PT L     +GV DLF MP + L +GP + +    RG+ SLLRH S GTL+S++   +++SRN+
Sbjct: 3440 VFLASDNTPLKFGRYE-KSLFTSYQQLARSLTMYYASGALFRAGLVVGSLEILGNPTGLARHLSQGVADLFRMPYQGLTRGPGAFIGGVTRGMGSLLRHVSTGTLNSITSFASSVSRNM 3557          
BLAST of mRNA_M-pyrifera_M_contig1208.4279.1 vs. uniprot
Match: H2XP00_CIOIN (Uncharacterized protein n=3 Tax=Ciona intestinalis TaxID=7719 RepID=H2XP00_CIOIN)

HSP 1 Score: 86.3 bits (212), Expect = 3.730e-17
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 1
Query:    1 VFLALDKSPLLFRPVSLRGVLARPDQIAEQIASNYAMDALLRSLAVVGSLEALGSPTTLLSAWGKGVYDLFAMPIRALPQGPTSTVRATFRGLSSLLRHASAGTLSSVSGVTNALSRNL 357
            +++++D+  L F   S R V     ++ +++  +Y  + +  +  V+GSL+ LG+P T L ++ KGV D   MP   L  GPT+ V    RGLSSLLRH S+GTL SV+ + +++SRNL
Sbjct: 3093 LYVSIDRGVLSFSKFSCRDVDTTVAELTQELMRHYFAETVFGAGWVIGSLDLLGNPATALRSYAKGVSDFLLMPYEGLMMGPTAFVGGFTRGLSSLLRHLSSGTLRSVTNIASSISRNL 3211          
BLAST of mRNA_M-pyrifera_M_contig1208.4279.1 vs. uniprot
Match: UPI000719AC75 (vacuolar protein sorting-associated protein 13B-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719AC75)

HSP 1 Score: 85.5 bits (210), Expect = 6.970e-17
Identity = 50/119 (42.02%), Postives = 69/119 (57.98%), Query Frame = 1
Query:    1 VFLALDKSPLLFRPVSLRGVLARPDQIAEQIASNYAMDALLRSLAVVGSLEALGSPTTLLSAWGKGVYDLFAMPIRALPQGPTSTVRATFRGLSSLLRHASAGTLSSVSGVTNALSRNL 357
            +FLA D +PL F     R +   P  +A  +  +YA  A LR+  VVGSL+ LGSPT++L     G+ DLF MP      GP S +    RG +SLLRH SAG ++SV+    ++SRN+
Sbjct: 3698 LFLASDSTPLSFGAFERRDLCTTPWCLANALLRHYAAGAALRAGWVVGSLDLLGSPTSMLREVTSGMADLFRMPYEGATHGPGSFIAGMSRGAASLLRHTSAGAITSVTNFALSVSRNM 3816          
BLAST of mRNA_M-pyrifera_M_contig1208.4279.1 vs. uniprot
Match: A0A6P4ZTE8_BRABE (vacuolar protein sorting-associated protein 13B-like n=4 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4ZTE8_BRABE)

HSP 1 Score: 85.1 bits (209), Expect = 9.500e-17
Identity = 46/119 (38.66%), Postives = 71/119 (59.66%), Query Frame = 1
Query:    1 VFLALDKSPLLFRPVSLRGVLARPDQIAEQIASNYAMDALLRSLAVVGSLEALGSPTTLLSAWGKGVYDLFAMPIRALPQGPTSTVRATFRGLSSLLRHASAGTLSSVSGVTNALSRNL 357
            VF++ D + L F+  S   V      + + +A +Y   AL R+  V+GSL+ LGSP +LL +   G+ D F +P   L +GP + V    +G SSL+RH SAGTL+S+  + N++SRN+
Sbjct: 3550 VFISSDHTRLTFKHFSRTPVFTVSRNLVQDLALHYGSGALFRAGWVLGSLDILGSPASLLGSISSGISDFFRLPYEGLTRGPGAFVSGVTKGASSLVRHVSAGTLTSIVNLANSISRNM 3668          
BLAST of mRNA_M-pyrifera_M_contig1208.4279.1 vs. uniprot
Match: C3ZQS8_BRAFL (Uncharacterized protein n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZQS8_BRAFL)

HSP 1 Score: 85.1 bits (209), Expect = 9.510e-17
Identity = 46/119 (38.66%), Postives = 71/119 (59.66%), Query Frame = 1
Query:    1 VFLALDKSPLLFRPVSLRGVLARPDQIAEQIASNYAMDALLRSLAVVGSLEALGSPTTLLSAWGKGVYDLFAMPIRALPQGPTSTVRATFRGLSSLLRHASAGTLSSVSGVTNALSRNL 357
            VF++ D + L F+  S   V      + + +A +Y   AL R+  V+GSL+ LGSP +LL +   G+ D F +P   L +GP + V    +G SSL+RH SAGTL+S+  + N++SRN+
Sbjct: 3881 VFISSDHTRLTFKNFSRTPVFTVSRNLVQDLALHYGSGALFRAGWVLGSLDILGSPASLLGSISSGISDFFRLPYEGLTRGPGAFVSGVTKGASSLVRHVSAGTLTSIVNLANSISRNM 3999          
BLAST of mRNA_M-pyrifera_M_contig1208.4279.1 vs. uniprot
Match: A0A8B7YAP6_ACAPL (vacuolar protein sorting-associated protein 13B-like isoform X1 n=4 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YAP6_ACAPL)

HSP 1 Score: 84.3 bits (207), Expect = 1.760e-16
Identity = 48/119 (40.34%), Postives = 70/119 (58.82%), Query Frame = 1
Query:    1 VFLALDKSPLLFRPVSLRGVLARPDQIAEQIASNYAMDALLRSLAVVGSLEALGSPTTLLSAWGKGVYDLFAMPIRALPQGPTSTVRATFRGLSSLLRHASAGTLSSVSGVTNALSRNL 357
            +F+A D +PL FR      + A   Q+A+ +  +Y   AL ++  V+GSLE LG+P  LL   G G+ D   +P   L +GP + V     G SSLLRH SAGTL+S++   +++SRNL
Sbjct: 2669 LFIAADSTPLSFRQFDSGPMFATTRQLAQALTMHYTSGALFKAGWVLGSLELLGNPAGLLRNVGSGLADSVMLPYEGLTRGPAAFVAGVTSGTSSLLRHLSAGTLTSITKFASSVSRNL 2787          
BLAST of mRNA_M-pyrifera_M_contig1208.4279.1 vs. uniprot
Match: UPI00145500BC (LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13B-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI00145500BC)

HSP 1 Score: 80.5 bits (197), Expect = 3.950e-15
Identity = 46/119 (38.66%), Postives = 69/119 (57.98%), Query Frame = 1
Query:    1 VFLALDKSPLLFRPVSLRGVLARPDQIAEQIASNYAMDALLRSLAVVGSLEALGSPTTLLSAWGKGVYDLFAMPIRALPQGPTSTVRATFRGLSSLLRHASAGTLSSVSGVTNALSRNL 357
            +F+A+D +PL F       V A   Q+ + +  +Y   AL ++  V+GSLE LG+P  LL     G+ D F +P   L +GP + V     G SSLL+H SAGTL+S++   +++SRNL
Sbjct: 3681 LFIAVDSTPLSFNQFDSGPVFATTRQLVQALTVHYTSGALFKAGWVLGSLEILGNPAGLLRNVRSGLTDSFMLPYEGLTRGPAAFVAGVTSGTSSLLKHLSAGTLTSITMFASSVSRNL 3799          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1208.4279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKG1_9PHAE1.970e-6291.13VPS13_C domain-containing protein n=2 Tax=Ectocarp... [more]
A0A7S1G5R3_9STRA1.040e-1945.16Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A0H5QH82_9EUKA1.880e-1938.98VPS13_C domain-containing protein n=2 Tax=Spongosp... [more]
R7TEM8_CAPTE7.920e-1842.86Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
H2XP00_CIOIN3.730e-1738.66Uncharacterized protein n=3 Tax=Ciona intestinalis... [more]
UPI000719AC756.970e-1742.02vacuolar protein sorting-associated protein 13B-li... [more]
A0A6P4ZTE8_BRABE9.500e-1738.66vacuolar protein sorting-associated protein 13B-li... [more]
C3ZQS8_BRAFL9.510e-1738.66Uncharacterized protein n=2 Tax=Branchiostoma flor... [more]
A0A8B7YAP6_ACAPL1.760e-1640.34vacuolar protein sorting-associated protein 13B-li... [more]
UPI00145500BC3.950e-1538.66LOW QUALITY PROTEIN: vacuolar protein sorting-asso... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1208contigM-pyrifera_M_contig1208:3451..4530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.9
Seed ortholog evalue5.5e-54
Seed eggNOG ortholog2880.D8LBD2
Preferred nameVPS13B
KEGG koko:K19526
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0007034,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0019898,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0044425,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072665,GO:0072666
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons2
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815727.355605-CDS-M-pyrifera_M_contig1208:3450..36901622815727.355605-CDS-M-pyrifera_M_contig1208:3450..3690Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1208 3451..3690 +
1692277541.0421567-CDS-M-pyrifera_M_contig1208:3450..36901692277541.0421567-CDS-M-pyrifera_M_contig1208:3450..3690Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1208 3451..3690 +
1622815727.3711367-CDS-M-pyrifera_M_contig1208:4398..45301622815727.3711367-CDS-M-pyrifera_M_contig1208:4398..4530Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1208 4399..4530 +
1692277541.0595284-CDS-M-pyrifera_M_contig1208:4398..45301692277541.0595284-CDS-M-pyrifera_M_contig1208:4398..4530Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1208 4399..4530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1208.4279.1prot_M-pyrifera_M_contig1208.4279.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1208 3451..4530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1208.4279.1

>prot_M-pyrifera_M_contig1208.4279.1 ID=prot_M-pyrifera_M_contig1208.4279.1|Name=mRNA_M-pyrifera_M_contig1208.4279.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
VFLALDKSPLLFRPVSLRGVLARPDQIAEQIASNYAMDALLRSLAVVGSL
EALGSPTTLLSAWGKGVYDLFAMPIRALPQGPTSTVRATFRGLSSLLRHA
SAGTLSSVSGVTNALSRNLRSRGG
back to top

mRNA from alignment at M-pyrifera_M_contig1208:3451..4530+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1208.4279.1 ID=mRNA_M-pyrifera_M_contig1208.4279.1|Name=mRNA_M-pyrifera_M_contig1208.4279.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at M-pyrifera_M_contig1208:3451..4530+ (Macrocystis pyrifera P11B4 male)
GTGTTTCTTGCTCTGGACAAGTCGCCGTTGCTGTTCAGGCCGGTATCTCT ACGGGGCGTGCTAGCGCGTCCTGACCAAATAGCGGAGCAGATCGCCTCGA ACTACGCGATGGATGCGCTGTTACGGTCGCTCGCGGTGGTCGGGTCTTTG GAAGCACTCGGAAGCCCGACGACCCTGCTCTCGGCATGGGGCAAGGGCGT GTACGATCTGTTCGCGATGCCCATAAGGGCTTTGCCTCAGGTATGACGTG GTGCAGGCCACGCGCTGGAAGCCCTTCGACTGCCCTGAGAAGTTCAGATT GTCACTAAGTTGGCGGCGTTGTATGATCGAACAGTTCGTATGGAGTATCG TTGGCGACTGGGTGTCTTGCTTGGTATGTCTGGTGACCTATTAATGTTAA TAGTAGTGGTCGCTGAGGTGAGCACTTGCTTTCTGCACTTGTGTTCACGG TTTCTTCGTTGTCGGCTGGGCTCTTGCCGTCCCTTGTGTGACCCTTGTGC ATTAGTGCAACTCGCTGTACCCGTAGCGGCCGAAAGCAAGTGAGAGCGCG CCACCGCGGAAGGGCGGGTACATGTCTTAATGCCTAGCAGCTCACCCTTT TCCCGTGTCTCAGCTCCATGCTTGTAGTATCACACATGGAACAGTGTTTT CACGACGCTATATTGAGCCCTGCGACGATAGATAAAGACAGCGCAACATA TTGCTCTGTATCGTTGTGGGAATTTGACACATCGCTTGTGATGCACAGCA CGATCTGCAACGTGTCCCGTCGCGCTGCCCCCCCCCCCCCACACAGCCTC TCTTCAACAGTTGAAGAGCGCCAGATACCTGATACTTGAAAAAATTACTC CCCAACCTGACCCTGACCTTTTCCTACGGCTTAAAACCCCTTCGATTAGT CATGTTCCAACTGTTGGCCATGTCCCGTTTTCTTTTCATACCTCGCAGGG TCCTACCTCCACCGTAAGGGCTACCTTCAGAGGGTTATCCTCCCTGCTCA GACACGCCTCGGCTGGAACTCTATCATCTGTGTCTGGCGTGACGAATGCC TTGTCTCGCAACCTACGGAGCCGAGGAGGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig1208:3451..4530+

>mRNA_M-pyrifera_M_contig1208.4279.1 ID=mRNA_M-pyrifera_M_contig1208.4279.1|Name=mRNA_M-pyrifera_M_contig1208.4279.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig1208:3451..4530+ (Macrocystis pyrifera P11B4 male)
GTGTTTCTTGCTCTGGACAAGTCGCCGTTGCTGTTCAGGCCGGTATCTCT
ACGGGGCGTGCTAGCGCGTCCTGACCAAATAGCGGAGCAGATCGCCTCGA
ACTACGCGATGGATGCGCTGTTACGGTCGCTCGCGGTGGTCGGGTCTTTG
GAAGCACTCGGAAGCCCGACGACCCTGCTCTCGGCATGGGGCAAGGGCGT
GTACGATCTGTTCGCGATGCCCATAAGGGCTTTGCCTCAGGTGTTTCTTG
CTCTGGACAAGTCGCCGTTGCTGTTCAGGCCGGTATCTCTACGGGGCGTG
CTAGCGCGTCCTGACCAAATAGCGGAGCAGATCGCCTCGAACTACGCGAT
GGATGCGCTGTTACGGTCGCTCGCGGTGGTCGGGTCTTTGGAAGCACTCG
GAAGCCCGACGACCCTGCTCTCGGCATGGGGCAAGGGCGTGTACGATCTG
TTCGCGATGCCCATAAGGGCTTTGCCTCAGGGTCCTACCTCCACCGTAAG
GGCTACCTTCAGAGGGTTATCCTCCCTGCTCAGACACGCCTCGGCTGGAA
CTCTATCATCTGTGTCTGGCGTGACGAATGCCTTGTCTCGCAACCTACGG
AGCCGAGGAGGGGGTCCTACCTCCACCGTAAGGGCTACCTTCAGAGGGTT
ATCCTCCCTGCTCAGACACGCCTCGGCTGGAACTCTATCATCTGTGTCTG
GCGTGACGAATGCCTTGTCTCGCAACCTACGGAGCCGAGGAGGG
back to top