mRNA_M-pyrifera_M_contig120796.4278.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120796.4278.1
Unique NamemRNA_M-pyrifera_M_contig120796.4278.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120796.4278.1 vs. uniprot
Match: A0A518A3A3_9PLAN (Uncharacterized protein n=8 Tax=Gimesia TaxID=1649453 RepID=A0A518A3A3_9PLAN)

HSP 1 Score: 275 bits (702), Expect = 3.870e-89
Identity = 132/143 (92.31%), Postives = 139/143 (97.20%), Query Frame = 1
Query:    1 TFGGWDMHRDIYDDNILPNKTGILDKALGNLLQDLSDRGLLDETLVVLTTEFGRTPVINQNAGRDHHPGVFSAALMGGGIKGGQFYGKSDKGGQSVETDGVLPADFNATIATALGLPIDKEIFSPNGRPFKVAHDGDPVLKLL 429
            TFGGWDMHRDIYD NILP++TG LDKALG+LL DLSDRGLLDETLVVLTTEFGRTPVINQNAGRDHHPGVFSAALMGGGIKGGQF+GKSDKGGQSV+ DGVLPADFNATIATALGLP+DKEIFSPNGRPFKVAHDG+PVLKLL
Sbjct:  294 TFGGWDMHRDIYDTNILPSRTGTLDKALGSLLSDLSDRGLLDETLVVLTTEFGRTPVINQNAGRDHHPGVFSAALMGGGIKGGQFFGKSDKGGQSVDADGVLPADFNATIATALGLPLDKEIFSPNGRPFKVAHDGEPVLKLL 436          
BLAST of mRNA_M-pyrifera_M_contig120796.4278.1 vs. uniprot
Match: A6C5Q5_9PLAN (Uncharacterized protein n=11 Tax=Planctomycetaceae TaxID=126 RepID=A6C5Q5_9PLAN)

HSP 1 Score: 258 bits (658), Expect = 1.680e-82
Identity = 124/142 (87.32%), Postives = 132/142 (92.96%), Query Frame = 1
Query:    4 FGGWDMHRDIYDDNILPNKTGILDKALGNLLQDLSDRGLLDETLVVLTTEFGRTPVINQNAGRDHHPGVFSAALMGGGIKGGQFYGKSDKGGQSVETDGVLPADFNATIATALGLPIDKEIFSPNGRPFKVAHDGDPVLKLL 429
            FGGWDMHRDIYDD ILP +TGILDKALGNLL++LS+RGLLDETLVVLTTEFGRTPVINQN GRDHHPGVFSAALMGGGIKGGQFYGKSDKGG SV+ DGVLPADFNATIA+AL LP+DKEIFS  GRPFKVAHDG+ V KLL
Sbjct:  295 FGGWDMHRDIYDDGILPTRTGILDKALGNLLKELSERGLLDETLVVLTTEFGRTPVINQNGGRDHHPGVFSAALMGGGIKGGQFYGKSDKGGHSVDADGVLPADFNATIASALNLPLDKEIFSSEGRPFKVAHDGEAVTKLL 436          
BLAST of mRNA_M-pyrifera_M_contig120796.4278.1 vs. uniprot
Match: A0A518I9F2_9PLAN (Uncharacterized protein n=4 Tax=Gimesia TaxID=1649453 RepID=A0A518I9F2_9PLAN)

HSP 1 Score: 255 bits (651), Expect = 1.560e-81
Identity = 123/143 (86.01%), Postives = 133/143 (93.01%), Query Frame = 1
Query:    1 TFGGWDMHRDIYDDNILPNKTGILDKALGNLLQDLSDRGLLDETLVVLTTEFGRTPVINQNAGRDHHPGVFSAALMGGGIKGGQFYGKSDKGGQSVETDGVLPADFNATIATALGLPIDKEIFSPNGRPFKVAHDGDPVLKLL 429
            TFGGWDMHRDIY+D  LP + GILDKALGNLL+DL+  GLLDETLVVLTTEFGRTPVINQNAGRDHHPGVFSAALMGGGIKGGQFYGKSD+GGQSV+ +GVLPADFNATIATAL LP+DKEIFSP+GRPFKVAHDG+ V KLL
Sbjct:  287 TFGGWDMHRDIYEDRTLPTRAGILDKALGNLLKDLAALGLLDETLVVLTTEFGRTPVINQNAGRDHHPGVFSAALMGGGIKGGQFYGKSDEGGQSVDENGVLPADFNATIATALNLPLDKEIFSPDGRPFKVAHDGEAVTKLL 429          
BLAST of mRNA_M-pyrifera_M_contig120796.4278.1 vs. uniprot
Match: A0A3L7NN05_9BACT (DUF1501 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7NN05_9BACT)

HSP 1 Score: 224 bits (570), Expect = 2.530e-69
Identity = 108/143 (75.52%), Postives = 121/143 (84.62%), Query Frame = 1
Query:    1 TFGGWDMHRDIYDDNILPNKTGILDKALGNLLQDLSDRGLLDETLVVLTTEFGRTPVINQNAGRDHHPGVFSAALMGGGIKGGQFYGKSDKGGQSVETDGVLPADFNATIATALGLPIDKEIFSPNGRPFKVAHDGDPVLKLL 429
            TFGGWDMH +IY+ + LPN+TGILDKA+ NLL+DLS+R LLD+TLVVLTTEFGR+P IN NAGRDHHP VFS+ L GGGI+GGQFYGKSD  G  VE DGV PADFNATIATALGLP+DK   SP GRPFKVAHDG P+L LL
Sbjct:  289 TFGGWDMHTNIYNPDALPNRTGILDKAVANLLKDLSERKLLDDTLVVLTTEFGRSPEINFNAGRDHHPAVFSSMLAGGGIRGGQFYGKSDAAGHGVEADGVSPADFNATIATALGLPLDKIATSPTGRPFKVAHDGKPILALL 431          
BLAST of mRNA_M-pyrifera_M_contig120796.4278.1 vs. uniprot
Match: UPI0019A57440 (DUF1501 domain-containing protein n=1 Tax=Fuerstiella sp. TaxID=1936112 RepID=UPI0019A57440)

HSP 1 Score: 211 bits (537), Expect = 2.870e-66
Identity = 100/143 (69.93%), Postives = 117/143 (81.82%), Query Frame = 1
Query:    1 TFGGWDMHRDIYDDNILPNKTGILDKALGNLLQDLSDRGLLDETLVVLTTEFGRTPVINQNAGRDHHPGVFSAALMGGGIKGGQFYGKSDKGGQSVETDGVLPADFNATIATALGLPIDKEIFSPNGRPFKVAHDGDPVLKLL 429
            T GGWDMH  IY+   LP + GI+DKA+GNL++DL+DR LLDETL+VLTTEFGR+PVIN NAGRDHHP VFS+ + GGGIKGGQFYGKSD  G +V+ DGV PADFNATIATAL LP+ + + SP GRPFKVAHDG  + KLL
Sbjct:  132 TCGGWDMHSSIYNGGTLPARAGIMDKAMGNLIKDLADRKLLDETLIVLTTEFGRSPVINYNAGRDHHPAVFSSVMAGGGIKGGQFYGKSDAAGHAVDEDGVAPADFNATIATALNLPLAEIVHSPTGRPFKVAHDGKVLSKLL 274          
BLAST of mRNA_M-pyrifera_M_contig120796.4278.1 vs. uniprot
Match: A0A3E0Q5C1_9BACT (DUF1501 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0Q5C1_9BACT)

HSP 1 Score: 214 bits (545), Expect = 8.300e-66
Identity = 101/143 (70.63%), Postives = 117/143 (81.82%), Query Frame = 1
Query:    1 TFGGWDMHRDIYDDNILPNKTGILDKALGNLLQDLSDRGLLDETLVVLTTEFGRTPVINQNAGRDHHPGVFSAALMGGGIKGGQFYGKSDKGGQSVETDGVLPADFNATIATALGLPIDKEIFSPNGRPFKVAHDGDPVLKLL 429
            TFGGWDMH  IY    LP +TG+LD+ALGNLL+DLS+ GLL +TL+ LTTEFGR+PVIN NAGRDHHP VFSA L GGG++GGQ YGKSD+ G  VE DGV P+DFNATIATALGLP+++E+FSP GRPF VAHDG  V  LL
Sbjct:  268 TFGGWDMHNSIYSPGALPARTGVLDRALGNLLKDLSESGLLSDTLIALTTEFGRSPVINYNAGRDHHPAVFSALLAGGGVQGGQLYGKSDEEGHGVEEDGVSPSDFNATIATALGLPLEEEVFSPTGRPFTVAHDGTCVEALL 410          
BLAST of mRNA_M-pyrifera_M_contig120796.4278.1 vs. uniprot
Match: A0A3L7Q8Q1_9BACT (DUF1501 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7Q8Q1_9BACT)

HSP 1 Score: 214 bits (546), Expect = 9.320e-66
Identity = 101/143 (70.63%), Postives = 116/143 (81.12%), Query Frame = 1
Query:    1 TFGGWDMHRDIYDDNILPNKTGILDKALGNLLQDLSDRGLLDETLVVLTTEFGRTPVINQNAGRDHHPGVFSAALMGGGIKGGQFYGKSDKGGQSVETDGVLPADFNATIATALGLPIDKEIFSPNGRPFKVAHDGDPVLKLL 429
            T GGWDMH  IY+   LP++ GI+D+ALGNL++DLS  GLLDETL+VLTTEFGR+P +N NAGRDHHP VFS  L GGGI+GGQ YG SD  G +V+ DGV PADFNATIATALGLP+ KEIFSP GRPFKVAHDG  + KLL
Sbjct:  286 TCGGWDMHTSIYNAGTLPSRAGIMDRALGNLIKDLSKSGLLDETLIVLTTEFGRSPQLNYNAGRDHHPAVFSTVLAGGGIRGGQLYGSSDSAGHAVDQDGVSPADFNATIATALGLPLTKEIFSPTGRPFKVAHDGKAIAKLL 428          
BLAST of mRNA_M-pyrifera_M_contig120796.4278.1 vs. uniprot
Match: A0A1I3KA13_9PLAN (Uncharacterized protein n=1 Tax=Planctomicrobium piriforme TaxID=1576369 RepID=A0A1I3KA13_9PLAN)

HSP 1 Score: 214 bits (546), Expect = 1.010e-65
Identity = 100/143 (69.93%), Postives = 116/143 (81.12%), Query Frame = 1
Query:    1 TFGGWDMHRDIYDDNILPNKTGILDKALGNLLQDLSDRGLLDETLVVLTTEFGRTPVINQNAGRDHHPGVFSAALMGGGIKGGQFYGKSDKGGQSVETDGVLPADFNATIATALGLPIDKEIFSPNGRPFKVAHDGDPVLKLL 429
            T GGWDMH +IY+   LPN+ G+LD+A+GNL++DLSDRGLLDETLVVLTTEFGR+P IN N GRDHHP  FS+ L G G+KGGQFYGKSDKGG  VE DGV PAD NAT+A  LGLP++  I SP GRPFKVAHDG P+ KL+
Sbjct:  288 TCGGWDMHANIYNGTGLPNRAGVLDRAMGNLIKDLSDRGLLDETLVVLTTEFGRSPQINYNGGRDHHPAAFSSVLAGAGVKGGQFYGKSDKGGVGVEADGVEPADLNATVAQVLGLPLETVITSPTGRPFKVAHDGKPIKKLI 430          
BLAST of mRNA_M-pyrifera_M_contig120796.4278.1 vs. uniprot
Match: A0A2E7D5K3_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7D5K3_9PLAN)

HSP 1 Score: 211 bits (536), Expect = 3.240e-64
Identity = 100/143 (69.93%), Postives = 118/143 (82.52%), Query Frame = 1
Query:    1 TFGGWDMHRDIYDDNILPNKTGILDKALGNLLQDLSDRGLLDETLVVLTTEFGRTPVINQNAGRDHHPGVFSAALMGGGIKGGQFYGKSDKGGQSVETDGVLPADFNATIATALGLPIDKEIFSPNGRPFKVAHDGDPVLKLL 429
            +FG WDMHR IYDDN LP +T +LD AL  L+ DL ++GLLDETL+V+ TEFGR+P IN NAGRDHHPGVFS AL GGGIKGG+FYGKSD+ G   + D V PAD NATIATA+GL +++EIFSP+GRPFKVAHDG PVL+LL
Sbjct:  290 SFGSWDMHRGIYDDNTLPARTKVLDNALSALIGDLKEKGLLDETLIVVATEFGRSPKINANAGRDHHPGVFSCALAGGGIKGGRFYGKSDEEGMYPDEDEVSPADLNATIATAMGLDLNEEIFSPDGRPFKVAHDGSPVLELL 432          
BLAST of mRNA_M-pyrifera_M_contig120796.4278.1 vs. uniprot
Match: A0A3B1E0S9_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1E0S9_9ZZZZ)

HSP 1 Score: 206 bits (524), Expect = 2.130e-62
Identity = 98/143 (68.53%), Postives = 112/143 (78.32%), Query Frame = 1
Query:    1 TFGGWDMHRDIYDDNILPNKTGILDKALGNLLQDLSDRGLLDETLVVLTTEFGRTPVINQNAGRDHHPGVFSAALMGGGIKGGQFYGKSDKGGQSVETDGVLPADFNATIATALGLPIDKEIFSPNGRPFKVAHDGDPVLKLL 429
            +FG WDMHR IY  N LP KT  LD+ L  LL DLS +GLLDETLVVLTTEFGR+PV+N N GRDHHP  FS+ L GGG+KGG+FYGKSDKGG  VE DG+ P DFNATIA ALGLP+ K + SP GRPFKVAHDG+P+ +L 
Sbjct:  292 SFGSWDMHRSIYSKNSLPKKTTELDQGLSALLGDLSSKGLLDETLVVLTTEFGRSPVVNTNGGRDHHPTAFSSVLAGGGVKGGRFYGKSDKGGVHVEDDGISPEDFNATIAYALGLPLTKVVTSPTGRPFKVAHDGEPIKELF 434          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120796.4278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518A3A3_9PLAN3.870e-8992.31Uncharacterized protein n=8 Tax=Gimesia TaxID=1649... [more]
A6C5Q5_9PLAN1.680e-8287.32Uncharacterized protein n=11 Tax=Planctomycetaceae... [more]
A0A518I9F2_9PLAN1.560e-8186.01Uncharacterized protein n=4 Tax=Gimesia TaxID=1649... [more]
A0A3L7NN05_9BACT2.530e-6975.52DUF1501 domain-containing protein n=1 Tax=Planctom... [more]
UPI0019A574402.870e-6669.93DUF1501 domain-containing protein n=1 Tax=Fuerstie... [more]
A0A3E0Q5C1_9BACT8.300e-6670.63DUF1501 domain-containing protein n=1 Tax=Planctom... [more]
A0A3L7Q8Q1_9BACT9.320e-6670.63DUF1501 domain-containing protein n=1 Tax=Planctom... [more]
A0A1I3KA13_9PLAN1.010e-6569.93Uncharacterized protein n=1 Tax=Planctomicrobium p... [more]
A0A2E7D5K3_9PLAN3.240e-6469.93Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A3B1E0S9_9ZZZZ2.130e-6268.53Uncharacterized protein n=1 Tax=hydrothermal vent ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120796contigM-pyrifera_M_contig120796:105..536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score247.7
Seed ortholog evalue3.2e-63
Seed eggNOG ortholog344747.PM8797T_15868
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF1501)
EggNOG OGs2J27C@203682,COG4102@1,COG4102@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size432
Cds size414
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815727.2972126-CDS-M-pyrifera_M_contig120796:104..5181622815727.2972126-CDS-M-pyrifera_M_contig120796:104..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120796 105..518 -
1692277541.004225-CDS-M-pyrifera_M_contig120796:104..5181692277541.004225-CDS-M-pyrifera_M_contig120796:104..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120796 105..518 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815727.310645-UTR-M-pyrifera_M_contig120796:518..5361622815727.310645-UTR-M-pyrifera_M_contig120796:518..536Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig120796 519..536 -
1692277541.0291038-UTR-M-pyrifera_M_contig120796:518..5361692277541.0291038-UTR-M-pyrifera_M_contig120796:518..536Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig120796 519..536 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120796.4278.1prot_M-pyrifera_M_contig120796.4278.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120796 105..518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120796.4278.1

>prot_M-pyrifera_M_contig120796.4278.1 ID=prot_M-pyrifera_M_contig120796.4278.1|Name=mRNA_M-pyrifera_M_contig120796.4278.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
MHRDIYDDNILPNKTGILDKALGNLLQDLSDRGLLDETLVVLTTEFGRTP
VINQNAGRDHHPGVFSAALMGGGIKGGQFYGKSDKGGQSVETDGVLPADF
NATIATALGLPIDKEIFSPNGRPFKVAHDGDPVLKLL*
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mRNA from alignment at M-pyrifera_M_contig120796:105..536-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120796.4278.1 ID=mRNA_M-pyrifera_M_contig120796.4278.1|Name=mRNA_M-pyrifera_M_contig120796.4278.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig120796:105..536- (Macrocystis pyrifera P11B4 male)
ACCTTCGGTGGCTGGGACATGCACCGCGACATTTATGATGATAACATCCT GCCCAACAAGACAGGTATCCTTGATAAAGCACTCGGGAACCTGCTTCAGG ATCTCTCCGACCGCGGCCTGCTCGACGAGACCCTCGTCGTGCTCACCACC GAATTCGGTCGAACCCCGGTAATCAACCAGAATGCCGGCCGTGACCATCA CCCCGGTGTCTTCTCAGCAGCCCTGATGGGTGGCGGCATCAAGGGTGGTC AGTTCTACGGTAAGTCGGATAAAGGTGGACAAAGTGTCGAAACGGACGGC GTACTTCCGGCTGACTTCAATGCCACCATCGCCACTGCCCTGGGACTTCC CATCGACAAGGAAATTTTCTCCCCCAACGGTCGCCCCTTCAAGGTGGCCC ACGATGGCGATCCGGTACTGAAACTGCTCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120796:105..536-

>mRNA_M-pyrifera_M_contig120796.4278.1 ID=mRNA_M-pyrifera_M_contig120796.4278.1|Name=mRNA_M-pyrifera_M_contig120796.4278.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig120796:105..536- (Macrocystis pyrifera P11B4 male)
ATGCACCGCGACATTTATGATGATAACATCCTGCCCAACAAGACAGGTAT
CCTTGATAAAGCACTCGGGAACCTGCTTCAGGATCTCTCCGACCGCGGCC
TGCTCGACGAGACCCTCGTCGTGCTCACCACCGAATTCGGTCGAACCCCG
GTAATCAACCAGAATGCCGGCCGTGACCATCACCCCGGTGTCTTCTCAGC
AGCCCTGATGGGTGGCGGCATCAAGGGTGGTCAGTTCTACGGTAAGTCGG
ATAAAGGTGGACAAAGTGTCGAAACGGACGGCGTACTTCCGGCTGACTTC
AATGCCACCATCGCCACTGCCCTGGGACTTCCCATCGACAAGGAAATTTT
CTCCCCCAACGGTCGCCCCTTCAAGGTGGCCCACGATGGCGATCCGGTAC
TGAAACTGCTCTAAATGCACCGCGACATTTATGATGATAACATCCTGCCC
AACAAGACAGGTATCCTTGATAAAGCACTCGGGAACCTGCTTCAGGATCT
CTCCGACCGCGGCCTGCTCGACGAGACCCTCGTCGTGCTCACCACCGAAT
TCGGTCGAACCCCGGTAATCAACCAGAATGCCGGCCGTGACCATCACCCC
GGTGTCTTCTCAGCAGCCCTGATGGGTGGCGGCATCAAGGGTGGTCAGTT
CTACGGTAAGTCGGATAAAGGTGGACAAAGTGTCGAAACGGACGGCGTAC
TTCCGGCTGACTTCAATGCCACCATCGCCACTGCCCTGGGACTTCCCATC
GACAAGGAAATTTTCTCCCCCAACGGTCGCCCCTTCAAGGTGGCCCACGA
TGGCGATCCGGTACTGAAACTGCTCTAA
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