mRNA_M-pyrifera_M_contig120780.4275.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120780.4275.1
Unique NamemRNA_M-pyrifera_M_contig120780.4275.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120780.4275.1 vs. uniprot
Match: A0A7S4IA48_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IA48_9EUKA)

HSP 1 Score: 139 bits (350), Expect = 1.830e-35
Identity = 72/140 (51.43%), Postives = 92/140 (65.71%), Query Frame = 1
Query:    1 DAFKVPDIHQLTTNYRSHRQLHNMAHSVVHLLECLFPEAIDKLAPDSGTRDGPKPSFVCGGEIGPIFHLLFGE---HSG------ERQQFGAKQVIIVRDDSCKNTLPEELKPCLCLTVFEAKGLEFDDVILFNFFKDSS 393
            + + VP++HQLT N+RSH  L  + +S++ LLE LFP  ID +APD GT  GP PS +       +F  LFG+   H G      E +QFGA QV+I R+ + K  LP+ LK  LCLTV+EAKGLEFDDVILFNFF DS+
Sbjct:  774 EKYTVPEVHQLTVNFRSHSALIKLGNSIIKLLENLFPNTIDVIAPDQGTTPGPLPSIMKYSADEDLFAFLFGQAAQHGGDDGKLPEIEQFGAHQVVITRNQATKALLPDLLKHALCLTVYEAKGLEFDDVILFNFFSDSA 913          
BLAST of mRNA_M-pyrifera_M_contig120780.4275.1 vs. uniprot
Match: A0A078BAF5_STYLE (Lupus brain antigen n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078BAF5_STYLE)

HSP 1 Score: 134 bits (338), Expect = 8.010e-34
Identity = 72/139 (51.80%), Postives = 89/139 (64.03%), Query Frame = 1
Query:    7 FKVPDIHQLTTNYRSHRQLHNMAHSVVHLLECLFPEAIDKLAPDSGTRDGPKPSFVCGGEIGP-IFHLLFG--------EHSGERQQFGAKQVIIVRDDSCKNTLPEELKPCLCLTVFEAKGLEFDDVILFNFFKDSSC 396
            F  P + QL  N+RSH ++ ++A+SVV L+E +FP+ IDKL  +S   DGPKP F+   +    +  LLF         E  G   QFG  QVIIVRD   K+ LPE LK  LCLTV+EAKGLEFDDVILFNFF+DS C
Sbjct:  670 FSAPSVLQLVKNFRSHSRILDLANSVVSLIELIFPKTIDKLMKESSDMDGPKPIFIDPAQSDEQLESLLFSKSFASQSSESVGNGPQFGCNQVIIVRDQESKHNLPEFLKSMLCLTVYEAKGLEFDDVILFNFFEDSKC 808          
BLAST of mRNA_M-pyrifera_M_contig120780.4275.1 vs. uniprot
Match: A0A1R2C2S6_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2C2S6_9CILI)

HSP 1 Score: 128 bits (322), Expect = 1.100e-31
Identity = 66/128 (51.56%), Postives = 85/128 (66.41%), Query Frame = 1
Query:   16 PDIHQLTTNYRSHRQLHNMAHSVVHLLECLFPEAIDKLAPDSGTRDGPKPSFVCGGEIGPIFHLLFG---EHSGERQQFGAKQVIIVRDDSCKNTLPEELKPCLCLTVFEAKGLEFDDVILFNFFKDS 390
            P I+QLT N+R+H Q+  MA+S+V LLE LFP+ IDK+A ++   DGP+P  +   +   +F++LFG     S  + QFG  QVIIVR    K  L   L   LCLTVFEAKGLEFDDV+L+NFF DS
Sbjct:  767 PKIYQLTMNFRTHNQILAMANSIVALLETLFPQTIDKMAKETSMIDGPRPKIISSSDHLHLFNVLFGFEKTQSVSQAQFGCNQVIIVRSQETKEKLHPLLSHALCLTVFEAKGLEFDDVVLYNFFTDS 894          
BLAST of mRNA_M-pyrifera_M_contig120780.4275.1 vs. uniprot
Match: A0A0V0R272_PSEPJ (p-loop containing nucleoside triphosphate hydrolase n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0R272_PSEPJ)

HSP 1 Score: 127 bits (320), Expect = 2.130e-31
Identity = 70/148 (47.30%), Postives = 91/148 (61.49%), Query Frame = 1
Query:    1 DAFKVPDIHQLTTNYRSHRQLHNMAHSVVHLLECLFPEAIDKLAPDSGTRDGPKPSFV--CGGEIGPIFHLLFGE-------HSGERQ---------QFGAKQVIIVRDDSCKNTLPEELKPCLCLTVFEAKGLEFDDVILFNFFKDS 390
            DAFK P + QLT N+RSH ++  +A+S+V  +E LFP+ IDKL  +    DGPKP  +  C  E+  +F +L GE       HS  +          +FG  QVIIVR+   K  LP+ L+  LCLTV+EAKGLEFDDVIL+NFF DS
Sbjct:  914 DAFKAPYVKQLTVNFRSHNRILELANSIVTTIEHLFPQTIDKLKKERSNIDGPKPIMIQECDPEL--LFFILIGEDQFKSAFHSQNKMGQMKNQQALEFGCNQVIIVRNQEAKKKLPQVLQHALCLTVYEAKGLEFDDVILYNFFSDS 1059          
BLAST of mRNA_M-pyrifera_M_contig120780.4275.1 vs. uniprot
Match: A0A7J8DDV8_MOLMO (UvrD-like helicase ATP-binding domain-containing protein n=1 Tax=Molossus molossus TaxID=27622 RepID=A0A7J8DDV8_MOLMO)

HSP 1 Score: 126 bits (316), Expect = 7.200e-31
Identity = 67/137 (48.91%), Postives = 91/137 (66.42%), Query Frame = 1
Query:   10 KVPDIHQLTTNYRSHRQLHNMAHSVVHLLECLFPEAIDKLAPDSGTRDGPKPSFVCGGEIGPIFHLLFG-EHSGERQQFGAKQVIIVRDDSCKNTLPEELKPCLCLTVFEAKGLEFDDVILFNFFKDSS-CTAWAEV 414
            K   IHQL  NYRSH  + N+A  VV LL+  FPE+ D+L  DSG  DGPKP+ +    +  +  LL G +   +  +FGA QVI+V ++  K  +PEEL+  L LTV+EAKGLEFDDV+L+NFF DS  C++W+E+
Sbjct: 1501 KPKKIHQLYQNYRSHSGILNLASGVVDLLQFYFPESFDRLPRDSGLFDGPKPTVLESCSLSDLAILLQGNKRKTQPIEFGAHQVILVANEMAKEKIPEELELALVLTVYEAKGLEFDDVLLYNFFTDSEGCSSWSEL 1637          
BLAST of mRNA_M-pyrifera_M_contig120780.4275.1 vs. uniprot
Match: A0A7J8HXS9_ROUAE (Tetratricopeptide repeat and ankyrin repeat containing 1 n=5 Tax=Rousettus aegyptiacus TaxID=9407 RepID=A0A7J8HXS9_ROUAE)

HSP 1 Score: 125 bits (315), Expect = 1.000e-30
Identity = 67/142 (47.18%), Postives = 89/142 (62.68%), Query Frame = 1
Query:   10 KVPDIHQLTTNYRSHRQLHNMAHSVVHLLECLFPEAIDKLAPDSGTRDGPKPSFVCGGEIGPIFHLLFG-EHSGERQQFGAKQVIIVRDDSCKNTLPEELKPCLCLTVFEAKGLEFDDVILFNFFKDSSC-TAWAEVGSVEP 429
            K   +HQL  NYRSH  + N+A  VV LL+C FPE+ D+L  DSG  DGPKP+ +    +  +  LL G +   +  +FGA QVI+V ++  K  +PEEL+  L LTV+EAKGLEFDDV+L+NFF DS     W  + S  P
Sbjct: 1525 KPKKVHQLYQNYRSHSGILNLASGVVDLLQCYFPESFDRLPRDSGLFDGPKPTVLESCSVSDLAILLRGNKRKTQPIEFGAHQVILVANEMAKEKIPEELELALVLTVYEAKGLEFDDVLLYNFFTDSEAYKEWKIISSFTP 1666          
BLAST of mRNA_M-pyrifera_M_contig120780.4275.1 vs. uniprot
Match: A0A1R2C385_9CILI (UvrD-like helicase C-terminal domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2C385_9CILI)

HSP 1 Score: 125 bits (313), Expect = 1.800e-30
Identity = 69/128 (53.91%), Postives = 85/128 (66.41%), Query Frame = 1
Query:   16 PDIHQLTTNYRSHRQLHNMAHSVVHLLECLFPEAIDKLAPDSGTRDGPKPSFVCGGEIGPIFHLLFG-EHSGERQ--QFGAKQVIIVRDDSCKNTLPEELKPCLCLTVFEAKGLEFDDVILFNFFKDS 390
            P I QLT N+R+H Q+  MA+S+V LLE LFP+ IDK+A ++   DGP P  +   E   +F++LFG E +  R   QFG  QVIIVR+   K  L   L   LCLTVFEAKGLEFDDVIL+NFF DS
Sbjct:  769 PIIFQLTMNFRTHNQVLAMANSIVALLETLFPQTIDKMAKETSMIDGPTPKIINSSENLHLFYVLFGFEKNLSRSDIQFGCNQVIIVRNQEAKEKLHPLLSHALCLTVFEAKGLEFDDVILYNFFTDS 896          
BLAST of mRNA_M-pyrifera_M_contig120780.4275.1 vs. uniprot
Match: A0BNC3_PARTE (UvrD-like helicase C-terminal domain-containing protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0BNC3_PARTE)

HSP 1 Score: 125 bits (313), Expect = 1.850e-30
Identity = 62/140 (44.29%), Postives = 89/140 (63.57%), Query Frame = 1
Query:   22 IHQLTTNYRSHRQLHNMAHSVVHLLECLFPEAIDKLAPDSGTRDGPKPSFVCGGEIGPIFHLLFGEHSGERQ--QFGAKQVIIVRDDSCKNTLPEELKPCLCLTVFEAKGLEFDDVILFNFFKDSSCTA--WAEVGSVEP 429
            I  L+ N+RSH Q+  +A+SV+ ++E  FP+ IDKL  ++    GPKP  +   ++G + + L    S ++   +FG  QVIIV+D   K  LP EL+  LCLT++EAKGLEFDDVILFNFF DS+ +   W  +  +EP
Sbjct:  760 IFDLSINFRSHNQILQLANSVIRMIEIFFPQKIDKLNKETSNLQGPKPIIIKSDDVGQLLNNLCDFFSNDKNTVEFGCNQVIIVKDQESKTRLPIELQNVLCLTIYEAKGLEFDDVILFNFFHDSTASIEDWQSLNDLEP 899          
BLAST of mRNA_M-pyrifera_M_contig120780.4275.1 vs. uniprot
Match: UPI00064C093C (TPR and ankyrin repeat-containing protein 1 n=2 Tax=Ochotona TaxID=9977 RepID=UPI00064C093C)

HSP 1 Score: 124 bits (312), Expect = 2.550e-30
Identity = 68/142 (47.89%), Postives = 89/142 (62.68%), Query Frame = 1
Query:   10 KVPDIHQLTTNYRSHRQLHNMAHSVVHLLECLFPEAIDKLAPDSGTRDGPKPSFVCGGEIGPIFHLLFG-EHSGERQQFGAKQVIIVRDDSCKNTLPEELKPCLCLTVFEAKGLEFDDVILFNFFKDS-SCTAWAEVGSVEP 429
            K   IHQL  NYRSH  + N+A  VV LL+  FPE+ D+L  DSG  DGPKP+ +    +  +  LL G +   +  +FGA QVI+V ++  K  +PEEL   L LTV+EAKGLEFDDV+L+NFF DS +C  W  + S  P
Sbjct: 1676 KPKKIHQLYQNYRSHSGILNLASGVVDLLQFYFPESFDRLPRDSGLFDGPKPTVLESCSVSDLAILLRGNKRKTQPIEFGAHQVILVANEMAKEKIPEELGLALVLTVYEAKGLEFDDVLLYNFFTDSEACKEWKIISSFTP 1817          
BLAST of mRNA_M-pyrifera_M_contig120780.4275.1 vs. uniprot
Match: A0A2R8Y890_HUMAN (TPR and ankyrin repeat-containing protein 1 (Fragment) n=1 Tax=Homo sapiens TaxID=9606 RepID=A0A2R8Y890_HUMAN)

HSP 1 Score: 123 bits (309), Expect = 4.340e-30
Identity = 65/137 (47.45%), Postives = 90/137 (65.69%), Query Frame = 1
Query:   10 KVPDIHQLTTNYRSHRQLHNMAHSVVHLLECLFPEAIDKLAPDSGTRDGPKPSFVCGGEIGPIFHLLFG-EHSGERQQFGAKQVIIVRDDSCKNTLPEELKPCLCLTVFEAKGLEFDDVILFNFFKDSS-CTAWAEV 414
            K   IHQL  NYRSH  + N+A  VV LL+  FPE+ D+L  DSG  DGPKP+ +    +  +  LL G +   +  +FGA QVI+V +++ K  +PEEL   L LT++EAKGLEFDDV+L+NFF DS  C +W+++
Sbjct:  476 KPKKIHQLYQNYRSHSGILNLASGVVDLLQFYFPESFDRLPRDSGLFDGPKPTVLESCSVSDLAILLRGNKRKTQPIEFGAHQVILVANETAKEKIPEELGLALVLTIYEAKGLEFDDVLLYNFFTDSEGCPSWSKL 612          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120780.4275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4IA48_9EUKA1.830e-3551.43Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A078BAF5_STYLE8.010e-3451.80Lupus brain antigen n=1 Tax=Stylonychia lemnae Tax... [more]
A0A1R2C2S6_9CILI1.100e-3151.56Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
A0A0V0R272_PSEPJ2.130e-3147.30p-loop containing nucleoside triphosphate hydrolas... [more]
A0A7J8DDV8_MOLMO7.200e-3148.91UvrD-like helicase ATP-binding domain-containing p... [more]
A0A7J8HXS9_ROUAE1.000e-3047.18Tetratricopeptide repeat and ankyrin repeat contai... [more]
A0A1R2C385_9CILI1.800e-3053.91UvrD-like helicase C-terminal domain-containing pr... [more]
A0BNC3_PARTE1.850e-3044.29UvrD-like helicase C-terminal domain-containing pr... [more]
UPI00064C093C2.550e-3047.89TPR and ankyrin repeat-containing protein 1 n=2 Ta... [more]
A0A2R8Y890_HUMAN4.340e-3047.45TPR and ankyrin repeat-containing protein 1 (Fragm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120780contigM-pyrifera_M_contig120780:40..468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.9
Seed ortholog evalue1.5e-26
Seed eggNOG ortholog5888.CAK60040
Preferred nameTRANK1
Hectar predicted targeting categoryother localisation
EggNOG OGs28IND@1,2QQZC@2759,3ZBDH@5878
Best tax levelCiliophora
Best eggNOG OGNA|NA|NA
Exons1
Model size429
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815727.1929672-CDS-M-pyrifera_M_contig120780:39..4681622815727.1929672-CDS-M-pyrifera_M_contig120780:39..468Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120780 40..468 +
1692277540.9381375-CDS-M-pyrifera_M_contig120780:39..4681692277540.9381375-CDS-M-pyrifera_M_contig120780:39..468Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120780 40..468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120780.4275.1prot_M-pyrifera_M_contig120780.4275.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120780 40..468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120780.4275.1

>prot_M-pyrifera_M_contig120780.4275.1 ID=prot_M-pyrifera_M_contig120780.4275.1|Name=mRNA_M-pyrifera_M_contig120780.4275.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
DAFKVPDIHQLTTNYRSHRQLHNMAHSVVHLLECLFPEAIDKLAPDSGTR
DGPKPSFVCGGEIGPIFHLLFGEHSGERQQFGAKQVIIVRDDSCKNTLPE
ELKPCLCLTVFEAKGLEFDDVILFNFFKDSSCTAWAEVGSVEP
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mRNA from alignment at M-pyrifera_M_contig120780:40..468+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120780.4275.1 ID=mRNA_M-pyrifera_M_contig120780.4275.1|Name=mRNA_M-pyrifera_M_contig120780.4275.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig120780:40..468+ (Macrocystis pyrifera P11B4 male)
GATGCCTTCAAGGTGCCAGACATCCACCAGCTCACTACGAACTATCGCTC CCACCGCCAGCTCCACAACATGGCCCACAGTGTTGTTCACTTGTTGGAGT GTCTGTTCCCGGAAGCCATTGACAAGCTGGCACCCGACAGCGGCACCAGG GACGGGCCAAAGCCTTCCTTTGTCTGCGGTGGAGAGATTGGTCCTATCTT CCACCTGCTCTTTGGAGAGCACAGTGGAGAGAGGCAGCAGTTTGGAGCCA AGCAAGTCATCATTGTTCGTGACGACAGTTGCAAGAACACGCTTCCTGAA GAGCTGAAACCATGCCTCTGCCTGACGGTATTCGAAGCCAAGGGTCTCGA ATTCGACGATGTGATTCTCTTCAACTTCTTCAAGGACTCCTCCTGCACCG CTTGGGCTGAAGTTGGTTCTGTGGAACCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120780:40..468+

>mRNA_M-pyrifera_M_contig120780.4275.1 ID=mRNA_M-pyrifera_M_contig120780.4275.1|Name=mRNA_M-pyrifera_M_contig120780.4275.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig120780:40..468+ (Macrocystis pyrifera P11B4 male)
GATGCCTTCAAGGTGCCAGACATCCACCAGCTCACTACGAACTATCGCTC
CCACCGCCAGCTCCACAACATGGCCCACAGTGTTGTTCACTTGTTGGAGT
GTCTGTTCCCGGAAGCCATTGACAAGCTGGCACCCGACAGCGGCACCAGG
GACGGGCCAAAGCCTTCCTTTGTCTGCGGTGGAGAGATTGGTCCTATCTT
CCACCTGCTCTTTGGAGAGCACAGTGGAGAGAGGCAGCAGTTTGGAGCCA
AGCAAGTCATCATTGTTCGTGACGACAGTTGCAAGAACACGCTTCCTGAA
GAGCTGAAACCATGCCTCTGCCTGACGGTATTCGAAGCCAAGGGTCTCGA
ATTCGACGATGTGATTCTCTTCAACTTCTTCAAGGACTCCTCCTGCACCG
CTTGGGCTGAAGTTGGTTCTGTGGAACCCGATGCCTTCAAGGTGCCAGAC
ATCCACCAGCTCACTACGAACTATCGCTCCCACCGCCAGCTCCACAACAT
GGCCCACAGTGTTGTTCACTTGTTGGAGTGTCTGTTCCCGGAAGCCATTG
ACAAGCTGGCACCCGACAGCGGCACCAGGGACGGGCCAAAGCCTTCCTTT
GTCTGCGGTGGAGAGATTGGTCCTATCTTCCACCTGCTCTTTGGAGAGCA
CAGTGGAGAGAGGCAGCAGTTTGGAGCCAAGCAAGTCATCATTGTTCGTG
ACGACAGTTGCAAGAACACGCTTCCTGAAGAGCTGAAACCATGCCTCTGC
CTGACGGTATTCGAAGCCAAGGGTCTCGAATTCGACGATGTGATTCTCTT
CAACTTCTTCAAGGACTCCTCCTGCACCGCTTGGGCTGAAGTTGGTTCTG
TGGAACCC
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