mRNA_M-pyrifera_M_contig120757.4273.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120757.4273.1
Unique NamemRNA_M-pyrifera_M_contig120757.4273.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120757.4273.1 vs. uniprot
Match: A0A7S4M4B3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M4B3_9EUKA)

HSP 1 Score: 99.0 bits (245), Expect = 1.330e-21
Identity = 73/111 (65.77%), Postives = 84/111 (75.68%), Query Frame = 1 
Query:   49 LHLLSGQVLKTIWRLGQPTYPAVLHWASG-SRYIGDLSEDYQREGFGICIYSNCDRFYGSWTVDKRHGRXXXXXXXXXXXXXXXXXXXXXXKGTLRFAGDESTFYGKFSGD 378
            LHL +G VLKT W+ G PTYPAVL      +RY+GDLSE + REGFG+CIY++ DR+YG W  ++R   XXXXXXXXXXXXXXXXXXXXXX GTL F  DES   GKFSGD
Sbjct:  453 LHLKNGNVLKTTWKFGLPTYPAVLCLEDKRTRYVGDLSERFFREGFGVCIYASEDRYYGQWVNEERQXXXXXXXXXXXXXXXXXXXXXXXXXGTLCFGNDESNITGKFSGD 563
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BLAST of mRNA_M-pyrifera_M_contig120757.4273.1 vs. uniprot
Match: A0A7S3KNT6_EUPCR (Hypothetical protein n=1 Tax=Euplotes crassus TaxID=5936 RepID=A0A7S3KNT6_EUPCR)

HSP 1 Score: 52.8 bits (125), Expect = 1.850e-5
Identity = 24/52 (46.15%), Postives = 31/52 (59.62%), Query Frame = 1 
Query:   97 QPTYPAVLHWASGSRYIGDLSEDYQREGFGICIYSNCDRFYGSWTVDKRHGR 252
            +P       W S SRYIGD  E+  +EGFGI IY N D++ G W  + RHG+
Sbjct:   60 EPVSSLQTKWVSSSRYIGDWKEN-TKEGFGIQIYKNKDKYEGLWANNMRHGQ 110
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120757.4273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4M4B3_9EUKA1.330e-2165.77Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A7S3KNT6_EUPCR1.850e-546.15Hypothetical protein n=1 Tax=Euplotes crassus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120757contigM-pyrifera_M_contig120757:67..502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815727.0980585-CDS-M-pyrifera_M_contig120757:66..1581622815727.0980585-CDS-M-pyrifera_M_contig120757:66..158Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120757 67..158 -
1692277540.904958-CDS-M-pyrifera_M_contig120757:66..1581692277540.904958-CDS-M-pyrifera_M_contig120757:66..158Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120757 67..158 -
1622815727.113464-CDS-M-pyrifera_M_contig120757:213..5021622815727.113464-CDS-M-pyrifera_M_contig120757:213..502Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120757 214..502 -
1692277540.9145977-CDS-M-pyrifera_M_contig120757:213..5021692277540.9145977-CDS-M-pyrifera_M_contig120757:213..502Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120757 214..502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120757.4273.1prot_M-pyrifera_M_contig120757.4273.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120757 67..502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120757.4273.1

>prot_M-pyrifera_M_contig120757.4273.1 ID=prot_M-pyrifera_M_contig120757.4273.1|Name=mRNA_M-pyrifera_M_contig120757.4273.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
KFVGSWNENVQHGEGELHLLSGQVLKTIWRLGQPTYPAVLHWASGSRYIG
DLSEDYQREGFGICIYSNCDRFYGSWTVDKRHGRGMFVTSKGTEYNGEWQ
DDLMEGKGTLRFAGDESTFYGKFSGDW
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mRNA from alignment at M-pyrifera_M_contig120757:67..502-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120757.4273.1 ID=mRNA_M-pyrifera_M_contig120757.4273.1|Name=mRNA_M-pyrifera_M_contig120757.4273.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=436bp|location=Sequence derived from alignment at M-pyrifera_M_contig120757:67..502- (Macrocystis pyrifera P11B4 male)
AAGTTCGTGGGCTCTTGGAACGAGAACGTGCAGCATGGCGAGGGAGAACT
CCACCTTCTCTCAGGCCAGGTTCTGAAGACGATCTGGCGCCTCGGGCAGC
CGACCTATCCTGCAGTGCTCCACTGGGCGTCAGGCTCTCGCTACATTGGA
GATCTTTCCGAGGACTACCAAAGGGAAGGCTTTGGCATTTGTATATATTC
GAACTGTGACCGCTTCTACGGCAGCTGGACCGTGGACAAACGGCACGGCC
GAGGAATGTTCGTCACAAGCAAAGGGACGGAGTACAATGGTAAGCGCACA
CCCTCGCCCAACATCGTTCAGGCTTTCTCTGACCTTAGGTGCAGGAGAGT
GGCAGGACGACTTGATGGAGGGCAAGGGCACGCTCCGCTTTGCCGGAGAC
GAGTCGACTTTCTATGGGAAGTTCAGCGGCGACTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120757:67..502-

>mRNA_M-pyrifera_M_contig120757.4273.1 ID=mRNA_M-pyrifera_M_contig120757.4273.1|Name=mRNA_M-pyrifera_M_contig120757.4273.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig120757:67..502- (Macrocystis pyrifera P11B4 male)
AAGTTCGTGGGCTCTTGGAACGAGAACGTGCAGCATGGCGAGGGAGAACT
CCACCTTCTCTCAGGCCAGGTTCTGAAGACGATCTGGCGCCTCGGGCAGC
CGACCTATCCTGCAGTGCTCCACTGGGCGTCAGGCTCTCGCTACATTGGA
GATCTTTCCGAGGACTACCAAAGGGAAGGCTTTGGCATTTGTATATATTC
GAACTGTGACCGCTTCTACGGCAGCTGGACCGTGGACAAACGGCACGGCC
GAGGAATGTTCGTCACAAGCAAAGGGACGGAGTACAATGAAGTTCGTGGG
CTCTTGGAACGAGAACGTGCAGCATGGCGAGGGAGAACTCCACCTTCTCT
CAGGCCAGGTTCTGAAGACGATCTGGCGCCTCGGGCAGCCGACCTATCCT
GCAGTGCTCCACTGGGCGTCAGGCTCTCGCTACATTGGAGATCTTTCCGA
GGACTACCAAAGGGAAGGCTTTGGCATTTGTATATATTCGAACTGTGACC
GCTTCTACGGCAGCTGGACCGTGGACAAACGGCACGGCCGAGGAATGTTC
GTCACAAGCAAAGGGACGGAGTACAATGGAGAGTGGCAGGACGACTTGAT
GGAGGGCAAGGGCACGCTCCGCTTTGCCGGAGACGAGTCGACTTTCTATG
GGAAGTTCAGCGGCGACTGGGAGAGTGGCAGGACGACTTGATGGAGGGCA
AGGGCACGCTCCGCTTTGCCGGAGACGAGTCGACTTTCTATGGGAAGTTC
AGCGGCGACTGG
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