mRNA_M-pyrifera_M_contig120745.4272.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig120745.4272.1 vs. uniprot
Match: A0A1Y1HSB7_KLENI (Transcription elongation factor SPT5 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HSB7_KLENI) HSP 1 Score: 91.7 bits (226), Expect = 2.060e-18 Identity = 55/155 (35.48%), Postives = 88/155 (56.77%), Query Frame = 1
Query: 1 VKLVAVRVMVGVLKVPKNNIILSAGNWVRIKKGMHKGDLAQILSVGEDQGSALVKFVPRLDLSNVGRRA-GSGVKRKRLTRVQQKMFDREELEQMGAEVADSNYCGIDCVAFKSH-RFVGGFQIKNMALKSLDIMGVVPSPNELQKFQEKNEEED 459
+ LV +R M VL++ K + L WVR++ G++KGDLAQ++ V + A +K +PR+DL + RR G G +K+ TR Q+ F +E + V D F ++ +F G+ K ++LKS+++ VVPS +ELQ+FQ + ED
Sbjct: 303 ITLVPIREMRDVLRITKKQLELQRDTWVRVRNGLYKGDLAQVVDVDHVRNQATLKLIPRVDLQELARRLEGEGRDQKKKTRPPQRFFSLDEARDLRIPVESKRDNYGDAFEFINNLKFRDGYFFKTVSLKSIEVKEVVPSFDELQRFQNAPQGED 457
BLAST of mRNA_M-pyrifera_M_contig120745.4272.1 vs. uniprot
Match: A0A7D9IBC1_PARCT (Transcription elongation factor SPT5 n=3 Tax=Alcyonacea TaxID=40677 RepID=A0A7D9IBC1_PARCT) HSP 1 Score: 89.4 bits (220), Expect = 1.300e-17 Identity = 57/164 (34.76%), Postives = 89/164 (54.27%), Query Frame = 1
Query: 4 KLVAVRVMVGVLKVPKNNIILSAGNWVRIKKGMHKGDLAQILSVGEDQGSALVKFVPRLDLS----NVGRRAGSGVKRKRLTRVQQKMFDREELEQMGAEVADSNYCGIDCVAFKSHRFVGGFQIKNMALKSLDIMGVVPSPNELQKFQEKNEEEDLASAASAT 483
K+V V+ M VL V K+ + L A WVR+K+G+ K DLAQI V + +K +PR+D + N KRKR + QK+F+ E L +G E+ D F+ +R+ GF KNMA+ +L G+ P+ +EL+KF+ +E+ D+ A ++
Sbjct: 229 KMVPVKEMTDVLNVVKDLVQLKAKQWVRLKRGIFKDDLAQIDYVHPSKNQVTLKMIPRIDYAKPRGNKAIEPEDQEKRKRFRKPPQKLFEPEALRGIGGEIHQDG----DFYIFEGNRYRQGFLYKNMAISALVTEGIKPTLSELEKFESTSEDVDIELPAKSS 388
BLAST of mRNA_M-pyrifera_M_contig120745.4272.1 vs. uniprot
Match: A0A2R6XA60_MARPO (Transcription elongation factor SPT5 n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XA60_MARPO) HSP 1 Score: 89.4 bits (220), Expect = 1.310e-17 Identity = 57/160 (35.62%), Postives = 87/160 (54.37%), Query Frame = 1
Query: 1 VKLVAVRVMVGVLKVPKNNIILSAGNWVRIKKGMHKGDLAQILSVGEDQGSALVKFVPRLDLS------NVGRRAGSGVKRKRLTRVQQKMFDREELEQMGAEVA---DSNYCGIDCVAFKSHRFVGGFQIKNMALKSLDIMGVVPSPNELQKFQEKNEE 453
VKLV ++ M VL V K ++ + WVR+K G++KGDLA+++ V + A +K +PR+DL N G GS K R + + +EL+ + + D N+ G F +F G+ K ++LKS+D GVVPS +ELQKFQ+ +E
Sbjct: 249 VKLVPIKEMTDVLSVEKKSVDIDQDTWVRVKNGVYKGDLAKVVDVDHVRQRATIKLIPRVDLQALALKMNEGSIKGSKDDAKNRPRPAPRFINVQELQDLKISIERKRDPNHAGEYFEFFGGMQFKDGYLYKGVSLKSIDSNGVVPSFDELQKFQKPTDE 408
BLAST of mRNA_M-pyrifera_M_contig120745.4272.1 vs. uniprot
Match: A0A3S3Q223_9ACAR (DRB sensitivity-inducing factor large subunit (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3Q223_9ACAR) HSP 1 Score: 89.0 bits (219), Expect = 1.650e-17 Identity = 54/156 (34.62%), Postives = 86/156 (55.13%), Query Frame = 1
Query: 7 LVAVRVMVGVLKVPKNNIILSAGNWVRIKKGMHKGDLAQILSVGEDQGSALVKFVPRLDLSNVGRRAGS--------GVKRKRLTRVQQKMFDREELEQMGAEVADSNYCGIDCVAFKSHRFVGGFQIKNMALKSLDIMGVVPSPNELQKFQEKNE 450
+VA+ M +LKV K ++ G WVR+K+G++K DLAQ+ V QG +K +PR+D + R+ G+ KRKR R K+FD + + +G EV D + F+ +R+ GF KN + ++ + GV P+ +EL+KF+E E
Sbjct: 197 MVAINEMTDILKVTKEQALIKPGQWVRLKRGIYKDDLAQVDYVDIAQGQVHLKLIPRIDYT---RKRGALRTTENEASAKRKRTKRPVAKLFDIDAVRAIGGEVTSDG----DFMVFEGNRYRRGFLFKNFLISAIVVDGVKPTLSELEKFEEHPE 345
BLAST of mRNA_M-pyrifera_M_contig120745.4272.1 vs. uniprot
Match: UPI001F04CDA1 (transcription elongation factor SPT5-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04CDA1) HSP 1 Score: 87.8 bits (216), Expect = 4.410e-17 Identity = 59/157 (37.58%), Postives = 86/157 (54.78%), Query Frame = 1
Query: 4 KLVAVRVMVGVLKVPKNNIILSAGNWVRIKKGMHKGDLAQILSVGEDQGSALVKFVPRLDLSNV-GRRAGSGV---KRKRLTRVQQKMFDREELEQMGAEVADSNYCGIDCVAFKSHRFVGGFQIKNMALKSLDIMGVVPSPNELQKFQEKNEEEDL 462
K+V V+ M VL V K+ + L A WVR+K+G+ K DLAQI V + +K +PR+D + G +A K+KR R QK+FD E L G E+ D F+ +RF GF KNMA+ +L G+ P+ +EL+KF+ ++ DL
Sbjct: 124 KMVPVQEMTDVLNVVKDLVQLKAKQWVRMKRGIFKDDLAQIDYVHPSKNQVTLKMIPRIDYTKPRGSKALESQEQEKKKRFRRPPQKLFDAEALRSNGGEIHHDG----DFSLFEGNRFRQGFLYKNMAISALITEGIKPTLSELEKFESTTDDIDL 276
BLAST of mRNA_M-pyrifera_M_contig120745.4272.1 vs. uniprot
Match: A0A2B4SYR4_STYPI (Transcription elongation factor SPT5 n=2 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4SYR4_STYPI) HSP 1 Score: 86.3 bits (212), Expect = 1.530e-16 Identity = 49/156 (31.41%), Postives = 87/156 (55.77%), Query Frame = 1
Query: 7 LVAVRVMVGVLKVPKNNIILSAGNWVRIKKGMHKGDLAQILSVGEDQGSALVKFVPRLDLSNVGRRAGS----GVKRKRLTRVQQKMFDREELEQMGAEVADSNYCGIDCVAFKSHRFVGGFQIKNMALKSLDIMGVVPSPNELQKFQEKNEEEDL 462
+V +R M V++V K + + WVR+K+G++K DLAQ+ V + +K +PR+D + + A S G KRK+ + QK+FD + + +G E+ D + F+ R+ GGF K +A+ ++ + G+ P+ EL+KF+ E+ +L
Sbjct: 230 MVPIREMTDVMRVVKEVVSVKPRQWVRLKRGIYKDDLAQVDFVNTARNQVTLKMIPRIDYTRMRGLAKSAEDAGEKRKKKRKPPQKLFDADSIRGIGGEIGQDG----DFMIFEGSRYRGGFMYKTLAMSAIVVEGIKPTLLELEKFETSPEDVEL 381
BLAST of mRNA_M-pyrifera_M_contig120745.4272.1 vs. uniprot
Match: T1FU80_HELRO (Transcription elongation factor SPT5 n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1FU80_HELRO) HSP 1 Score: 86.3 bits (212), Expect = 1.540e-16 Identity = 58/160 (36.25%), Postives = 84/160 (52.50%), Query Frame = 1
Query: 25 MVGVLKVPKNNIILSAGNWVRIKKGMHKGDLAQILSVGEDQGSALVKFVPRLDLS-NVG----RRAGSGVKRKRLTRVQQKMFDREELEQMGAEVADSNYCGIDCVAFKSHRFVGGFQIKNMALKSLDIMGVVPSPNELQKFQEKNEEEDLASAASATNF 489
M VL+V K L + WVR+KKG+ K DLA + V Q +K +PR+D S N G + G+ KRK R QK FD E + +G EVA+ D + F+ +R+ GF KN + ++ I GV P+ +EL+KF + E ++ S A F
Sbjct: 256 MPSVLRVTKETNNLKSKQWVRLKKGVFKDDLAMVDYVDPSQNMVFLKLIPRIDYSRNRGVMKSTQNGTAEKRKIYRRPPQKPFDPEAIRAIGGEVANDG----DFMIFEGNRYNKGFLYKNFNINAIIIDGVTPTLSELEKFDHQPEAVEVKSLTEAQTF 411
BLAST of mRNA_M-pyrifera_M_contig120745.4272.1 vs. uniprot
Match: UPI001CF380ED (transcription elongation factor SPT5-like n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF380ED) HSP 1 Score: 85.9 bits (211), Expect = 2.090e-16 Identity = 51/156 (32.69%), Postives = 85/156 (54.49%), Query Frame = 1
Query: 7 LVAVRVMVGVLKVPKNNIILSAGNWVRIKKGMHKGDLAQILSVGEDQGSALVKFVPRLDLSNVGRRAGS----GVKRKRLTRVQQKMFDREELEQMGAEVADSNYCGIDCVAFKSHRFVGGFQIKNMALKSLDIMGVVPSPNELQKFQEKNEEEDL 462
+V ++ M V+KV K + + WVR+K+G++K DLAQ+ V + +K +PR+D S A S G KRK+ R K+FD + + +G E+ D + F+ R+ GGF K +A+ ++ + G+ P+ ELQKF+ E+ +L
Sbjct: 227 MVPIKEMTDVMKVVKEVVSIKPKQWVRLKRGIYKDDLAQVDYVNTARNQVTLKMIPRIDYSRSRGLAKSAEDAGEKRKKKRRPAPKLFDADAIRGIGGEIGQDG----DFMIFEGSRYRGGFMYKTLAMSAIVVEGIKPTLLELQKFETAPEDVEL 378
BLAST of mRNA_M-pyrifera_M_contig120745.4272.1 vs. uniprot
Match: UPI000A2A7FF5 (transcription elongation factor SPT5 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A7FF5) HSP 1 Score: 85.5 bits (210), Expect = 2.810e-16 Identity = 52/156 (33.33%), Postives = 87/156 (55.77%), Query Frame = 1
Query: 4 KLVAVRVMVGVLKVPKNNIILSAGNWVRIKKGMHKGDLAQILSVGEDQGSALVKFVPRLDLSNVG---RRAGSGVKRKRLTRVQQKMFDREELEQMGAEVADSNYCGIDCVAFKSHRFVGGFQIKNMALKSLDIMGVVPSPNELQKFQEKNEEEDL 462
++V ++ M VLKV K + L A WVR+K+G++K DLAQ+ V + +K +PR+D S R A KRKR + QK+F +E+ +G E+ D + F+++R+ GG K +A+ ++ G+ P+ EL+KF+ E+ +L
Sbjct: 123 QMVPIKEMTDVLKVVKEVVALKAKQWVRLKRGIYKDDLAQVDYVNTARNQVTLKMIPRIDYSRTRGTPRTAEDQEKRKRKRKPPQKLFIADEVRSIGGELNQDG----DFIIFENNRYRGGXLYKTLAMSAVVSEGIKPTLQELEKFEAVPEDVEL 274
BLAST of mRNA_M-pyrifera_M_contig120745.4272.1 vs. uniprot
Match: A7S1M2_NEMVE (DRB sensitivity-inducing factor large subunit (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7S1M2_NEMVE) HSP 1 Score: 84.3 bits (207), Expect = 6.190e-16 Identity = 48/156 (30.77%), Postives = 86/156 (55.13%), Query Frame = 1
Query: 4 KLVAVRVMVGVLKVPKNNIILSAGNWVRIKKGMHKGDLAQILSVGEDQGSALVKFVPRLDLSN---VGRRAGSGVKRKRLTRVQQKMFDREELEQMGAEVADSNYCGIDCVAFKSHRFVGGFQIKNMALKSLDIMGVVPSPNELQKFQEKNEEEDL 462
K+V + M VLKV K + + WVR+K+G++K DLAQ+ V + +K +PR+D + + + A KRKR + QK+FD + + +G +++ D + F+ R+ GGF K +A+ ++ G+ P+ EL++F+ E+ +L
Sbjct: 222 KMVPITEMTDVLKVVKEVVTVKPKQWVRLKRGIYKDDLAQVDYVNTARNQVTLKMIPRIDYARTRGIPKSAEDPEKRKRKRKPPQKLFDADSVRSVGGDISQDG----DFMLFEGGRYRGGFLYKTLAMSAIVTEGIKPTLQELERFEAAPEDVEL 373 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120745.4272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig120745.4272.1 >prot_M-pyrifera_M_contig120745.4272.1 ID=prot_M-pyrifera_M_contig120745.4272.1|Name=mRNA_M-pyrifera_M_contig120745.4272.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=159bp MVGVLKVPKNNIILSAGNWVRIKKGMHKGDLAQILSVGEDQGSALVKFVPback to top mRNA from alignment at M-pyrifera_M_contig120745:19..519+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig120745.4272.1 ID=mRNA_M-pyrifera_M_contig120745.4272.1|Name=mRNA_M-pyrifera_M_contig120745.4272.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig120745:19..519+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig120745:19..519+ >mRNA_M-pyrifera_M_contig120745.4272.1 ID=mRNA_M-pyrifera_M_contig120745.4272.1|Name=mRNA_M-pyrifera_M_contig120745.4272.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=954bp|location=Sequence derived from alignment at M-pyrifera_M_contig120745:19..519+ (Macrocystis pyrifera P11B4 male)back to top |