mRNA_M-pyrifera_M_contig12074.4269.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12074.4269.1
Unique NamemRNA_M-pyrifera_M_contig12074.4269.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig12074.4269.1 vs. uniprot
Match: A0A6H5KN23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN23_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 2.350e-40
Identity = 152/318 (47.80%), Postives = 166/318 (52.20%), Query Frame = 1 
Query:   16 FKKDCSAALLVPRVTVAGLPSSSALLGTTTSRKEHDGPPPSLATAGGEGQ-------------------PSLTLRLANPQDTLLRVRVAGDPSIGIAAS-LDGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTREDPG-----ASPAGATAAPSTAAGID----VTVTPKLGRSKSEWVRLEGKEDEFLRQPGDRHRLPDGLLRL--DGGXXXXXXXXXXXXXXXXCATPVLLHQQGDVAWVQVPLGVASADRVRAAVVAAGSPPAAXXXXTVRLFLVMGEGEEESGGEGKGASGGGDVWMPIAVRFPLSKC 876
            FKKDCSAAL VPR+TVA LPSS ALLG TT                                       PSL LRLANPQ TLLR+RVA +     A S LDG+            XXXXXXXXXXXXXXXXXXXXXX           A+   A AAP+  AG      VTV P  G  + +WV LEG+EDE +RQPGDR+RLP GLL    DGG                 ATP LLHQQGDVAWV+VPL  A ADRV AA  A      A     VR  LVMGEG+           GG D+ MPIAVRFPLS C
Sbjct:  423 FKKDCSAALSVPRITVASLPSSLALLGPTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSLVLRLANPQITLLRLRVATEHGPSTAESDLDGNIAAAAAATVGVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPATGVTAAAAPALGAGGGNAGFVTVRP-AGWGEDDWVHLEGREDEIIRQPGDRYRLPRGLLSRADDGGGGYTGSLPGAERSGRAGATPFLLHQQGDVAWVRVPLDKACADRVAAA--AKAXXXXALPVLDVRFSLVMGEGD---------GGGGDDISMPIAVRFPLSSC 728
[Close]
BLAST of mRNA_M-pyrifera_M_contig12074.4269.1 vs. uniprot
Match: D7FRF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRF1_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 1.790e-35
Identity = 160/342 (46.78%), Postives = 172/342 (50.29%), Query Frame = 1 
Query:   13 WFKKDCSAALLVPRVTVAGLPSSSALLGTTTSRKEHDGPPPSLATAGGEGQ-----------------------PSLTLRLANPQDTLLRVRVA---------GDPSIGIAASLDGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRE--------------------DPGASPAGATAAPSTAAGIDVTVTPKLGRSKSEWVRLEGKEDEFLRQPGDRHRLPDGLLRL--DGGXXXXXXXXXXXXXXXXCATPVLLHQQGDVAWVQVPLGVASADRVRAAVVAAGSPPAAXXXXTVRLFLVMGEGEEESGGEGKGASGGGDVWMPIAVRFPLSKC 876
            WFKKDCSAAL VPR+TVA LPSS ALLG T                                            PSL LRLANPQ TLLR+RVA          DP+   A      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                       +PG                 VTV P  G  + +WV LEG+EDE +RQPGDR+RLP GLL    DGG                 ATP LLHQQGDVAWV+VP   A ADRV AAV AA + P       VR  LVMGEGE   GG G       D+ MPIAVRFPLS C
Sbjct:  337 WFKKDCSAALSVPRITVASLPSSLALLGPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSLVLRLANPQITLLRLRVATENGPSSAESDPAGNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNPGF----------------VTVRP-AGWGEGDWVHLEGREDEIIRQPGDRYRLPRGLLSRADDGGGGDTGSPPGAERSGRAGATPFLLHQQGDVAWVRVPFDKACADRVAAAVKAAAALPV----LDVRFSLVMGEGE---GGSGD------DISMPIAVRFPLSSC 648
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12074.4269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KN23_9PHAE2.350e-4047.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRF1_ECTSI1.790e-3546.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12074contigM-pyrifera_M_contig12074:3150..4034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size885
Cds size885
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815726.8957138-CDS-M-pyrifera_M_contig12074:3149..40341622815726.8957138-CDS-M-pyrifera_M_contig12074:3149..4034Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12074 3150..4034 -
1692277540.8111193-CDS-M-pyrifera_M_contig12074:3149..40341692277540.8111193-CDS-M-pyrifera_M_contig12074:3149..4034Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12074 3150..4034 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12074.4269.1prot_M-pyrifera_M_contig12074.4269.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12074 3150..4034 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12074.4269.1

>prot_M-pyrifera_M_contig12074.4269.1 ID=prot_M-pyrifera_M_contig12074.4269.1|Name=mRNA_M-pyrifera_M_contig12074.4269.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=295bp
KGGKWFKKDCSAALLVPRVTVAGLPSSSALLGTTTSRKEHDGPPPSLATA
GGEGQPSLTLRLANPQDTLLRVRVAGDPSIGIAASLDGSSSGAAEDDGSA
ATEAENSASRAGGKDRTSPRAGGTREDPGASPAGATAAPSTAAGIDVTVT
PKLGRSKSEWVRLEGKEDEFLRQPGDRHRLPDGLLRLDGGGNNVGGAGND
DSGGGGCATPVLLHQQGDVAWVQVPLGVASADRVRAAVVAAGSPPAAAVV
VTVRLFLVMGEGEEESGGEGKGASGGGDVWMPIAVRFPLSKCLP*
back to top

mRNA from alignment at M-pyrifera_M_contig12074:3150..4034-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12074.4269.1 ID=mRNA_M-pyrifera_M_contig12074.4269.1|Name=mRNA_M-pyrifera_M_contig12074.4269.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=885bp|location=Sequence derived from alignment at M-pyrifera_M_contig12074:3150..4034- (Macrocystis pyrifera P11B4 male)
AAGGGGGGCAAATGGTTCAAGAAGGACTGCTCCGCCGCGCTCCTCGTTCC
GCGAGTTACGGTAGCCGGCCTCCCCTCATCCTCCGCCCTGCTCGGCACCA
CAACATCGCGAAAAGAACACGATGGGCCTCCTCCATCGTTGGCAACAGCT
GGCGGGGAGGGGCAGCCGTCGCTCACCCTCCGGCTAGCAAACCCCCAGGA
CACCTTGCTGCGGGTCCGTGTCGCAGGAGACCCTTCCATCGGAATCGCGG
CGTCGTTAGATGGGAGCTCCTCTGGTGCGGCCGAGGATGACGGGTCCGCC
GCCACCGAGGCTGAGAATAGCGCTAGTAGAGCTGGGGGTAAGGATAGAAC
CTCACCCCGGGCCGGGGGGACGAGGGAAGACCCCGGCGCTTCCCCTGCCG
GCGCTACAGCCGCTCCGTCTACTGCTGCGGGCATAGATGTAACGGTGACA
CCGAAGCTTGGCCGGAGCAAGAGTGAGTGGGTGCGGCTAGAGGGCAAGGA
GGACGAGTTTTTGAGACAGCCCGGTGACCGACATCGCCTACCGGATGGGC
TCTTGCGTCTGGACGGCGGCGGCAACAATGTGGGTGGCGCAGGAAACGAC
GACAGCGGCGGCGGTGGTTGCGCCACGCCGGTTTTGTTACATCAGCAGGG
GGACGTGGCGTGGGTGCAGGTTCCGCTGGGAGTCGCGTCGGCCGATCGAG
TCCGGGCGGCGGTAGTGGCGGCGGGTTCTCCGCCCGCGGCGGCGGTGGTG
GTGACAGTGCGACTTTTCCTCGTGATGGGGGAGGGGGAAGAGGAGAGTGG
CGGCGAGGGAAAGGGGGCCTCGGGTGGCGGGGATGTATGGATGCCGATTG
CGGTGCGCTTCCCCTTGTCGAAATGCCTTCCATAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig12074:3150..4034-

>mRNA_M-pyrifera_M_contig12074.4269.1 ID=mRNA_M-pyrifera_M_contig12074.4269.1|Name=mRNA_M-pyrifera_M_contig12074.4269.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1770bp|location=Sequence derived from alignment at M-pyrifera_M_contig12074:3150..4034- (Macrocystis pyrifera P11B4 male)
AAGGGGGGCAAATGGTTCAAGAAGGACTGCTCCGCCGCGCTCCTCGTTCC
GCGAGTTACGGTAGCCGGCCTCCCCTCATCCTCCGCCCTGCTCGGCACCA
CAACATCGCGAAAAGAACACGATGGGCCTCCTCCATCGTTGGCAACAGCT
GGCGGGGAGGGGCAGCCGTCGCTCACCCTCCGGCTAGCAAACCCCCAGGA
CACCTTGCTGCGGGTCCGTGTCGCAGGAGACCCTTCCATCGGAATCGCGG
CGTCGTTAGATGGGAGCTCCTCTGGTGCGGCCGAGGATGACGGGTCCGCC
GCCACCGAGGCTGAGAATAGCGCTAGTAGAGCTGGGGGTAAGGATAGAAC
CTCACCCCGGGCCGGGGGGACGAGGGAAGACCCCGGCGCTTCCCCTGCCG
GCGCTACAGCCGCTCCGTCTACTGCTGCGGGCATAGATGTAACGGTGACA
CCGAAGCTTGGCCGGAGCAAGAGTGAGTGGGTGCGGCTAGAGGGCAAGGA
GGACGAGTTTTTGAGACAGCCCGGTGACCGACATCGCCTACCGGATGGGC
TCTTGCGTCTGGACGGCGGCGGCAACAATGTGGGTGGCGCAGGAAACGAC
GACAGCGGCGGCGGTGGTTGCGCCACGCCGGTTTTGTTACATCAGCAGGG
GGACGTGGCGTGGGTGCAGGTTCCGCTGGGAGTCGCGTCGGCCGATCGAG
TCCGGGCGGCGGTAGTGGCGGCGGGTTCTCCGCCCGCGGCGGCGGTGGTG
GTGACAGTGCGACTTTTCCTCGTGATGGGGGAGGGGGAAGAGGAGAGTGG
CGGCGAGGGAAAGGGGGCCTCGGGTGGCGGGGATGTATGGATGCCGATTG
CGGTGCGCTTCCCCTTGTCGAAATGCCTTCCATAGAAGGGGGGCAAATGG
TTCAAGAAGGACTGCTCCGCCGCGCTCCTCGTTCCGCGAGTTACGGTAGC
CGGCCTCCCCTCATCCTCCGCCCTGCTCGGCACCACAACATCGCGAAAAG
AACACGATGGGCCTCCTCCATCGTTGGCAACAGCTGGCGGGGAGGGGCAG
CCGTCGCTCACCCTCCGGCTAGCAAACCCCCAGGACACCTTGCTGCGGGT
CCGTGTCGCAGGAGACCCTTCCATCGGAATCGCGGCGTCGTTAGATGGGA
GCTCCTCTGGTGCGGCCGAGGATGACGGGTCCGCCGCCACCGAGGCTGAG
AATAGCGCTAGTAGAGCTGGGGGTAAGGATAGAACCTCACCCCGGGCCGG
GGGGACGAGGGAAGACCCCGGCGCTTCCCCTGCCGGCGCTACAGCCGCTC
CGTCTACTGCTGCGGGCATAGATGTAACGGTGACACCGAAGCTTGGCCGG
AGCAAGAGTGAGTGGGTGCGGCTAGAGGGCAAGGAGGACGAGTTTTTGAG
ACAGCCCGGTGACCGACATCGCCTACCGGATGGGCTCTTGCGTCTGGACG
GCGGCGGCAACAATGTGGGTGGCGCAGGAAACGACGACAGCGGCGGCGGT
GGTTGCGCCACGCCGGTTTTGTTACATCAGCAGGGGGACGTGGCGTGGGT
GCAGGTTCCGCTGGGAGTCGCGTCGGCCGATCGAGTCCGGGCGGCGGTAG
TGGCGGCGGGTTCTCCGCCCGCGGCGGCGGTGGTGGTGACAGTGCGACTT
TTCCTCGTGATGGGGGAGGGGGAAGAGGAGAGTGGCGGCGAGGGAAAGGG
GGCCTCGGGTGGCGGGGATGTATGGATGCCGATTGCGGTGCGCTTCCCCT
TGTCGAAATGCCTTCCATAG
back to top