mRNA_M-pyrifera_M_contig12072.4264.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12072.4264.1
Unique NamemRNA_M-pyrifera_M_contig12072.4264.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12072.4264.1 vs. uniprot
Match: A0A6H5JM75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM75_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.280e-12
Identity = 45/106 (42.45%), Postives = 59/106 (55.66%), Query Frame = 1 
Query:    1 PDIMALLAELLSN-QYAFFAGISKGWRNAWGDLPKITQAITADTSASQLQWSFDGGLRKDYMLCCEIAEHCGIEVLRLLQWARA-NGADWESWTCTAAAEGGHLEV 312
            PDI+  L E +   QY FFAG+S+ WR+AW   P  T+A TADT   QL  SF  GL     +C +IA    +  L LL  AR  +   W+  TC+ A+E GH +V
Sbjct:    8 PDIVFRLMEFVGGEQYIFFAGVSRTWRDAWEGRPTTTRAFTADTGVPQLSQSFKCGLAPRSTVCRDIA---ALGRLDLLVSAREQHECPWDEETCSCASENGHADV 110
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BLAST of mRNA_M-pyrifera_M_contig12072.4264.1 vs. uniprot
Match: D7G8W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W5_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 3.270e-11
Identity = 40/92 (43.48%), Postives = 54/92 (58.70%), Query Frame = 1 
Query:   40 QYAFFAGISKGWRNAWGDLPKITQAITADTSASQLQWSFDGGLRKDYMLCCEIAEHCGIEVLRLLQWARAN-GADWESWTCTAAAEGGHLEV 312
            QY FFAG+S+ WR+AW   P  T+A+TADT   QL  SF+ GL +   +C +IA    +  L LL  AR      W+  TC+ A+E GH +V
Sbjct:    8 QYLFFAGVSRTWRDAWEGRPTTTRAVTADTGVPQLSQSFECGLARRSTVCQDIA---ALGRLDLLVSAREEYECPWDEDTCSYASENGHADV 96
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BLAST of mRNA_M-pyrifera_M_contig12072.4264.1 vs. uniprot
Match: D7G8V2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V2_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.350e-9
Identity = 35/93 (37.63%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:    4 DIMALLAELLS-NQYAFFAGISKGWRNAWGDLPKITQAITADTSASQLQWSFDGGLRKDYMLCCEIAEHCGIEVLRLLQWARANGADWESWTC 279
            D+ + L E +   Q+ FFAG+ + W+ AWG  P  T+A+T DT+ +QL  +F  GL     +C  +A+   +  L LLQ AR +G  W   TC
Sbjct:   10 DVASCLVEFVDYEQFLFFAGVCRAWKEAWGQRPPTTRAVTEDTTVAQLSQNFQCGLSLIADVCTSVAK---LGRLDLLQCARRHGCAWNEVTC 99
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12072.4264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JM75_9PHAE1.280e-1242.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8W5_ECTSI3.270e-1143.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8V2_ECTSI1.350e-937.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12072contigM-pyrifera_M_contig12072:7463..8755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size898
Cds size888
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12072.4264.1prot_M-pyrifera_M_contig12072.4264.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12072 7472..8755 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815726.6966994-UTR-M-pyrifera_M_contig12072:7462..74711622815726.6966994-UTR-M-pyrifera_M_contig12072:7462..7471Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12072 7463..7471 +
1692277540.6991055-UTR-M-pyrifera_M_contig12072:7462..74711692277540.6991055-UTR-M-pyrifera_M_contig12072:7462..7471Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12072 7463..7471 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815726.7086117-CDS-M-pyrifera_M_contig12072:7471..76911622815726.7086117-CDS-M-pyrifera_M_contig12072:7471..7691Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12072 7472..7691 +
1692277540.7180047-CDS-M-pyrifera_M_contig12072:7471..76911692277540.7180047-CDS-M-pyrifera_M_contig12072:7471..7691Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12072 7472..7691 +
1622815726.721389-CDS-M-pyrifera_M_contig12072:8087..87551622815726.721389-CDS-M-pyrifera_M_contig12072:8087..8755Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12072 8088..8755 +
1692277540.7327275-CDS-M-pyrifera_M_contig12072:8087..87551692277540.7327275-CDS-M-pyrifera_M_contig12072:8087..8755Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12072 8088..8755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12072.4264.1

>prot_M-pyrifera_M_contig12072.4264.1 ID=prot_M-pyrifera_M_contig12072.4264.1|Name=mRNA_M-pyrifera_M_contig12072.4264.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=296bp
MALLAELLSNQYAFFAGISKGWRNAWGDLPKITQAITADTSASQLQWSFD
GGLRKDYMLCCEIAEHCGIEVLRLLQWARANGADWESWTCTAAAEGGHLE
VLQWARANGCDWDEATTYQAAREGHLELLQWARAQGCPWGFEVCKGAAQN
GYLDTLKWMIAHGCPGSWGATSAAARGGQLHILKWLRSNDNLWNDSEVCM
KAASEGHLGVLQWARANGCDWSVDTCSAAAEGGHLQVLKWARCNGCDWDE
YTCNNAVAAGRLDILQWARSQDCPWNRRTFRLIEEDPRIKQWARLN
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mRNA from alignment at M-pyrifera_M_contig12072:7463..8755+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12072.4264.1 ID=mRNA_M-pyrifera_M_contig12072.4264.1|Name=mRNA_M-pyrifera_M_contig12072.4264.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1293bp|location=Sequence derived from alignment at M-pyrifera_M_contig12072:7463..8755+ (Macrocystis pyrifera P11B4 male)
CCGGACATCATGGCCTTACTGGCGGAACTACTATCTAACCAGTACGCGTT
TTTCGCGGGGATCTCGAAGGGGTGGAGGAACGCTTGGGGGGATCTCCCGA
AAATCACGCAAGCCATAACAGCTGACACCTCTGCATCCCAGCTGCAGTGG
AGCTTCGATGGCGGCCTGCGAAAGGATTATATGCTATGCTGTGAAATTGC
CGAACATTGCGGTATTGAGGTCCTGCGGTGTGCCCACTCGAATGGGTGCA
GACTACCCCAGGAAGCCTGCTATGTGGCCGCAGCCCAGGGGAAGCTGGAA
ATGATCCAGTGGGCAGTTCGCAATAGTTACGACTGGTGCGACGTGCTGTG
CCATGCGGCTGCGGCGGGGGGTAGCCTGCACATTCTTAAGTGGGCCCGCG
CTAACAACTTCTACTGGAGCTCAAAAACTTGCAGATTGGCCGCCGGCTCA
GGGCATCTAGAGGTTCTGCAGTGGGCACGTTCCGAAAACTGTCCTTGGGA
TGGAGAAACGTGCACCAGTGCCGCCAGCGGTGGACATCTCGGCGTTCTCC
AGTGAGCGCGAGCTAATGGCTGCGACTGGGGCGACGGGGCGTGCCGGAAT
GCCGCCGCTGGAAGCCACTTAGAAGTGCTTCAGTGGGCTCGGGCAAACGG
CGCCGATTGGGAGTCTTGGACGTGCACCGCTGCCGCCGAGGGGGGGCACC
TGGAAGTCCTCCAGTGGGCTAGGGCAAACGGTTGCGATTGGGACGAGGCT
ACAACCTATCAGGCTGCAAGAGAAGGCCACCTTGAACTGCTTCAGTGGGC
TCGGGCCCAAGGATGTCCCTGGGGCTTTGAGGTGTGTAAGGGCGCTGCGC
AAAATGGATACCTCGACACGCTCAAGTGGATGATAGCGCACGGCTGTCCC
GGGTCCTGGGGCGCCACATCTGCAGCAGCTCGAGGGGGGCAACTCCACAT
TCTCAAATGGTTACGGAGTAACGACAATCTATGGAACGACTCTGAAGTAT
GTATGAAGGCCGCAAGTGAAGGGCACCTGGGCGTGCTTCAATGGGCGAGA
GCTAATGGATGCGATTGGAGTGTTGATACATGTAGCGCAGCTGCTGAGGG
GGGTCATTTGCAGGTGCTCAAGTGGGCGCGGTGTAACGGCTGCGACTGGG
ACGAATACACGTGCAACAATGCTGTCGCGGCAGGGCGCCTGGACATCTTG
CAGTGGGCACGGTCGCAAGACTGCCCATGGAATCGCCGTACGTTCAGACT
GATCGAAGAGGACCCGCGTATTAAGCAGTGGGCGCGGCTTAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12072:7463..8755+

>mRNA_M-pyrifera_M_contig12072.4264.1 ID=mRNA_M-pyrifera_M_contig12072.4264.1|Name=mRNA_M-pyrifera_M_contig12072.4264.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1776bp|location=Sequence derived from alignment at M-pyrifera_M_contig12072:7463..8755+ (Macrocystis pyrifera P11B4 male)
ATGGCCTTACTGGCGGAACTACTATCTAACCAGTACGCGTTTTTCGCGGG
GATCTCGAAGGGGTGGAGGAACGCTTGGGGGGATCTCCCGAAAATCACGC
AAGCCATAACAGCTGACACCTCTGCATCCCAGCTGCAGTGGAGCTTCGAT
GGCGGCCTGCGAAAGGATTATATGCTATGCTGTGAAATTGCCGAACATTG
CGGTATTGAGGTCCTGCGGTATGGCCTTACTGGCGGAACTACTATCTAAC
CAGTACGCGTTTTTCGCGGGGATCTCGAAGGGGTGGAGGAACGCTTGGGG
GGATCTCCCGAAAATCACGCAAGCCATAACAGCTGACACCTCTGCATCCC
AGCTGCAGTGGAGCTTCGATGGCGGCCTGCGAAAGGATTATATGCTATGC
TGTGAAATTGCCGAACATTGCGGTATTGAGGTCCTGCGGTTGCTTCAGTG
GGCTCGGGCAAACGGCGCCGATTGGGAGTCTTGGACGTGCACCGCTGCCG
CCGAGGGGGGGCACCTGGAAGTCCTCCAGTGGGCTAGGGCAAACGGTTGC
GATTGGGACGAGGCTACAACCTATCAGGCTGCAAGAGAAGGCCACCTTGA
ACTGCTTCAGTGGGCTCGGGCCCAAGGATGTCCCTGGGGCTTTGAGGTGT
GTAAGGGCGCTGCGCAAAATGGATACCTCGACACGCTCAAGTGGATGATA
GCGCACGGCTGTCCCGGGTCCTGGGGCGCCACATCTGCAGCAGCTCGAGG
GGGGCAACTCCACATTCTCAAATGGTTACGGAGTAACGACAATCTATGGA
ACGACTCTGAAGTATGTATGAAGGCCGCAAGTGAAGGGCACCTGGGCGTG
CTTCAATGGGCGAGAGCTAATGGATGCGATTGGAGTGTTGATACATGTAG
CGCAGCTGCTGAGGGGGGTCATTTGCAGGTGCTCAAGTGGGCGCGGTGTA
ACGGCTGCGACTGGGACGAATACACGTGCAACAATGCTGTCGCGGCAGGG
CGCCTGGACATCTTGCAGTGGGCACGGTCGCAAGACTGCCCATGGAATCG
CCGTACGTTCAGACTGATCGAAGAGGACCCGCGTATTAAGCAGTGGGCGC
GGCTTAACTGCTTCAGTGGGCTCGGGCAAACGGCGCCGATTGGGAGTCTT
GGACGTGCACCGCTGCCGCCGAGGGGGGGCACCTGGAAGTCCTCCAGTGG
GCTAGGGCAAACGGTTGCGATTGGGACGAGGCTACAACCTATCAGGCTGC
AAGAGAAGGCCACCTTGAACTGCTTCAGTGGGCTCGGGCCCAAGGATGTC
CCTGGGGCTTTGAGGTGTGTAAGGGCGCTGCGCAAAATGGATACCTCGAC
ACGCTCAAGTGGATGATAGCGCACGGCTGTCCCGGGTCCTGGGGCGCCAC
ATCTGCAGCAGCTCGAGGGGGGCAACTCCACATTCTCAAATGGTTACGGA
GTAACGACAATCTATGGAACGACTCTGAAGTATGTATGAAGGCCGCAAGT
GAAGGGCACCTGGGCGTGCTTCAATGGGCGAGAGCTAATGGATGCGATTG
GAGTGTTGATACATGTAGCGCAGCTGCTGAGGGGGGTCATTTGCAGGTGC
TCAAGTGGGCGCGGTGTAACGGCTGCGACTGGGACGAATACACGTGCAAC
AATGCTGTCGCGGCAGGGCGCCTGGACATCTTGCAGTGGGCACGGTCGCA
AGACTGCCCATGGAATCGCCGTACGTTCAGACTGATCGAAGAGGACCCGC
GTATTAAGCAGTGGGCGCGGCTTAAC
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