mRNA_M-pyrifera_M_contig1207.4262.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig1207.4262.1 vs. uniprot
Match: D8LEF4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF4_ECTSI) HSP 1 Score: 558 bits (1439), Expect = 1.980e-160 Identity = 769/2107 (36.50%), Postives = 968/2107 (45.94%), Query Frame = 1
Query: 1 MEADGLWVHPS-GADREPNRASPSTDSFKEDIQAIGRAVERLREGFADTSGSSPKSAPGHDSLHWNRAQSGSSLGSGGGSPHGREPNRRGVDRS---SDALRPLPAGQPPCPATPNSFPSTAQTS------HSHGRLSLRELRPTEHGRKLYSSDHILWRGD-----------AASGFSQDLGGNGDDSLDVRR------STG-----------ARDSGRPTG-GSASGRVGVMTATVTSEWKKGDDGEEEKGGKERRRMSAGVSSEHRARALLVDGQAGTLSLP--------------LPP--RSPXXXXXXWPSDDVSEGGKKTSRRHSRKRRPADRRRGGKGERQEDGGGMGEAEGG-EXGAKRXXXXXXXXXXXXXXXXXXVDGGGSLLELRDALKSREKDLLRLKRDVGAVATSAGSFKHLAASLGSG-VNAGSSAGFGCYDDNDXXXXGTNEDNRPRAPESRVTKPRTGPALGGGNAVDDAGEAPL-RVKDATRRSYRKGEIGG------PSKSSWLPAATAVHREAPSARATDLLQDGVYAIAQSLSPPPPQQLLST---SKG-ADVAVGGSRLVASAHGALKRMRAVLEQREVAARRAKDDAGKMADNLSEMSTRLHSSERKRRAQTAELTEARAEISRLAR--------------------RAKETAAAK--------------ESEERAALNLALRERDEDLTRLREKLEAATGEXXXXXXXXXXXXXXXXXSERDVRDALERAAVAEEDAAEQTARAAKAESAGRGLGAARNVAAQRAREEARSAVASLTSAEEEGRRQVREAVRAREQLGVERERSARLKLELEAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASEARRKTQEEEISLVRKQVARLDAKIEVDVRREQAKLDAATKASLAEAQRELLTL-STRVETLETDLRVTRQRERIAAEATDDLKAELVVCRKRSERAGAAAAAALEQALXXXXXXXXXXXXXXXXXETARRGSETLKRSLVVSQAQAAELRAEYSRLLSQLEPASATPSSRSGRAGGLGDGATAVSTTAGVLVAETPETAAGTTSAASAALRMRAELEERLALALAEATEARTVAQRLKLKVKAC-EREHKAVPTTLGGNSRDETERR--GAGHVGK--------------AQGLQERGGVSGGASGAGKRELHLACAAMDRVASALCAAMS--RTEHHGGDGDRGRKTDDTLWVTSMQPRGRAAGGSHNWTAPAAGRRRRR-----RALSADSNKPGDG-RDANDNLFSNEWEQGSEGD--QRFISRAEVRELSDCLRSAAGKILAARADEREAAEEEVARLQEELRDSEHREAETAARLEESRELSREQTGFVEGVWQERRRLETELGARGEEVKRLRASEDVARAAVKDLEGRAEDLSVALRQGQAQAKHDAQAAAAANTRDAMEALRRQLDDXXXXXXXXXXXXXXXXXX--IAALEELVAASRRISTHARKEFQGALDALKLSQELLLRIHRKRQSRDGYSDDSAAPPRSCKEPSAPPIKLHSRVNLAQ-----GSRERPPGAVAVAAAPEEGQPPSASA----SADAHAYELTAQASRLRDMSGNVKRLLQLAAGEVLGALEDTRDSFGAATPAAGNTRGTLAPSQGWEAGAGDPAALRRENVDLTEQLREANSVARALEADKARTDDQLGKAVAQLAEAQGHLRDKAAQALVLEEQVARSDADRREAREAQSTA-NNRLAEAESTGAVTRXXXXXXXXXXXXXXXXXXTALAVQTDLRKRCEELALASSAFATEVAKQKEERASSQERSRLEKTASANEXXXXXXXXXXXXXXXXXXRIRIQKELDSARAEAQDIDSDVAQVLDALASSEKERRRLESELDRMSRAAGAARRAAKVAEGSAAHVQQDGSLELETKRREELEREGKRLASRVTELEAALIAASTEARKAAKIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKIAALTEATERAYREGVADEQARLADARERDQCKAAGIQKGMEEIT 5895
ME D WV S A RASP DSFK+DIQAIGRAVERLR+GFA T SSP APGHDS W+ S S L SG G GR + GV + RPL P A + + TS +S GRLSLRELR + R YS + R D AA+ ++ G G D S+G A D G P+ G A ++T +T + + DDG G E +A LL SLP L P RS D E + R HS G+ G G A G E G XXXXXX G L ELRDAL+SRE+DLLRLKRDV VATSA F+HL+ASLGSG V SS F + G N D +S + GGG+ AG A + ++ + R + G +GG P+ S+ A + A R +D A ++ L Q ST SKG A +A GS LVASAH L+RMRAVLEQR + RA DD+ +MA++L+++S RL SERKR AQ AEL + ++K+ AA+ E+ +R RLR++LE ATGEXXXXXXXXXXXXXXXX S+++ R A ERAA AEE+A TA A+RA+ EA ++ E XXXXXXXXXXXXXXXXXXXXX X ASEARRK QEEEISLVRKQV+RLDAKIE D+ R +A DA +A+ A A+RE +L ++ A LKAEL R+ A+ A A XXXX A+ +T LS+LE A+ + ++ SA +R R +LE RLALA+AEA E+R AQRLK K++A +RE P LG T+RR G G GK +GLQE L +C M+R+ASAL AA + RT G D G + DD W + RA S DSN+ G G D + F + E G EG +R +SRAEVRE+++ LR A ++L R +ER+AA + VA L+ +LRDSE REAE ARLEESRELSREQTGFVEGVW+ER RL +RLRASED AR A L+G+ DLS ALRQ QA+AK +A+AA AA RDAMEALR+QLDD I ALEELVAASRR+S AR+EF+GAL+ALKLSQELLLRIHR+RQ+ A P + +AP K H + + A G+ + P A A G+ P+++A S DAH +EL AQAS+LR MSGNVKRLLQLAAGEV GALEDTRDS G A G A + G + G R E L +Q+ + +A EA+K R +L AV +L + QG L DK ++A+VLE VAR + +R EAREA S A N+ LAEAE++ + T+ ALA Q +LR RC EL+LAS AFA+EVAKQKEERA SQER+RL + R R+++EL + RAEA+DID+DVAQVLDALASSEKERRRLE+EL R ++AA R+ E A V+ G E ET+RRE++ERE K L +R +LEAAL A E +KAA+ X +K + + +ATE+ Y +G A+E R A +RER+Q A ++K + E T
Sbjct: 1 MEEDRPWVPSSDNAGSGAGRASPLNDSFKDDIQAIGRAVERLRDGFAGTDSSSPAPAPGHDSAQWDGGLSSSMLASGPGDESGRPSSGDGVGGQPTLGNNSRPLVRELLPARAGVSGIFAEGDTSVLERTRYSDGRLSLRELRSADKSRTHYSDERARPRPDDAGDQSTTAVAAAAEGGGEMAGTGTQVSDQEGLFNKGGSSGSTHSGSTSRRRANDVGGPSSPGGAQREQSLVTPVLTPDVGEKDDG-----------RGPGARGETQAVGLLRLRGDREPSLPTAVSRTASAEPLLLLSPLIRSSTSASVLGSGDGAWESFR---REHSAS-----------GDNSSSSGDAGTAVAGTEDGMPAAXXXXXXAE------------SGPLFELRDALRSREEDLLRLKRDVSVVATSARGFRHLSASLGSGNVERSSSFSFQRSRGHGKDASGANTD------DSDLPSGNGSAFRGGGSDGSRAGGAGVDKINEEAFRPHHGGAVGGVLLRRQPADSALPGTALSFRTAATPGRPSD----NELASSRRLXXXXXXQQGSTATVSKGNAIIAASGSPLVASAHEGLQRMRAVLEQRALEVGRAHDDSKEMANSLNDVSARLRRSERKRNAQAAELAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSKDATAARXXXXXXXXXXGSLAETAQRXXXXXXX------XXRLRDRLETATGEXXXXXXXXXXXXXXXXASDKETRRARERAAAAEEEAGAATAXXXXXXXXXXXXX---XXXAERAQREAEASA---------------ELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXAEAEAGRLHSVRRERDSSVAEVANLTAALVLAREGQEAERGRFDRESKRAAALGEELVASEARRKVQEEEISLVRKQVSRLDAKIEGDMSRVKANSDATARATAAGAEREANSLRASXXXXXXXXXXXXXXXXXXXXNADASLKAELAAAREAEAELAASEARA--------------KXXXXRAARAAQLDKDTXXXXXXXXXXXXXXXXXXXXXXLSELEHAATSAATAXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXXXSAFVRARKDLEGRLALAVAEAAESRAEAQRLKRKLQAVSDREDGGTPAGLGVGFSARTKRRNGGGGTRGKDDDYLFGLDGDRPHREGLQE--------------ALRESCGVMERIASALSAAAADRRTSRRPGS-DGGSELDDPRWAFGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAFSVDSNRSGVGDADLRQDGFGDCAESGGEGHDLRRVVSRAEVREVAERLRFEAARLLGVRKEERKAAGDTVASLRRDLRDSESREAEVTARLEESRELSREQTGFVEGVWKERHRLXXXXXXXXXXXERLRASEDAARTAATVLDGKVADLSAALRQEQARAKREAEAAVAAEARDAMEALRQQLDDLRKEGEFQRLRAKYEKAKGRIVALEELVAASRRVSAQARREFKGALEALKLSQELLLRIHRQRQNNAVADPTDTATP-TTHPAAAPAPKHHHQPDAATRESHPGAPDETPSAAPADLAATAGERPTSAATSSLSTDAHVHELAAQASKLRGMSGNVKRLLQLAAGEVQGALEDTRDSLGVA--------GAAAATVGTQTAEGLDGPTRGEVECLEQQVVRMKAEGQAREAEKLRLSGELSAAVGELTKIQGLLEDKMSEAVVLEAHVARLETERNEAREAASAAANDGLAEAEASLSDTQARLE--------------AALATQRELRSRCAELSLASGAFASEVAKQKEERARSQERARLATAELRDLSAKFSRASKTAAADAAAERDRLERELVATRAEARDIDTDVAQVLDALASSEKERRRLEAELHRQTKAARVQRQQG---EREALEVE-SGRKERETERREKVERECKVLEARTGDLEAALAA---ELKKAAETGAVHEREVAGLREEATRLRESLQAEMERERGKWQAEQKAMXEEIMLARED----------DKASWIAKATEQGYEKGKAEEHHRTARSREREQRDLAALRKELSEST 1962 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1207.4262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig1207.4262.1 >prot_M-pyrifera_M_contig1207.4262.1 ID=prot_M-pyrifera_M_contig1207.4262.1|Name=mRNA_M-pyrifera_M_contig1207.4262.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=2285bp MEADGLWVHPSGADREPNRASPSTDSFKEDIQAIGRAVERLREGFADTSGback to top mRNA from alignment at M-pyrifera_M_contig1207:10417..25603+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig1207.4262.1 ID=mRNA_M-pyrifera_M_contig1207.4262.1|Name=mRNA_M-pyrifera_M_contig1207.4262.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=15187bp|location=Sequence derived from alignment at M-pyrifera_M_contig1207:10417..25603+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig1207:10417..25603+ >mRNA_M-pyrifera_M_contig1207.4262.1 ID=mRNA_M-pyrifera_M_contig1207.4262.1|Name=mRNA_M-pyrifera_M_contig1207.4262.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=13710bp|location=Sequence derived from alignment at M-pyrifera_M_contig1207:10417..25603+ (Macrocystis pyrifera P11B4 male)back to top |