mRNA_M-pyrifera_M_contig120653.4254.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120653.4254.1
Unique NamemRNA_M-pyrifera_M_contig120653.4254.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig120653.4254.1 vs. uniprot
Match: A0A081SII0_9BACT (Por_Secre_tail domain-containing protein n=1 Tax=Candidatus Thermochlorobacteriaceae bacterium GBChlB TaxID=1519464 RepID=A0A081SII0_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 2.880e-7
Identity = 48/130 (36.92%), Postives = 73/130 (56.15%), Query Frame = 1 
Query:    1 PASDDPVVVCGGNTVTITT--TTGLNASAIEIAGTLTSQVANL--STIGNIDGTGSLAFNTITSTPIFGAMSGT-FIGASGGTVDYGGGGAYTLP-TQSTYNNLTISNANTTTLGANV--TVNGDATFNG 366
            P  D+PV++    T+T+T    T + ++ I+  GTLT Q      ++ G + G G L   T  +   F   + T F+G +GGTV+YGG  +YTLP T STY NL IS + +T   A+V  +++G+ T  G
Sbjct: 1247 PGIDNPVIIGSNGTITVTNGAATAVPSTTIQATGTLTFQGTGFPATSFGTVSGEGLLRITTNDNPAPFPVGTFTSFLGTTGGTVEYGGSFSYTLPATVSTYRNLIISGSGSTKTFADVGLSISGNLTVQG 1376
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120653.4254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A081SII0_9BACT2.880e-736.92Por_Secre_tail domain-containing protein n=1 Tax=C... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120653contigM-pyrifera_M_contig120653:9..482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size474
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815726.0755672-CDS-M-pyrifera_M_contig120653:8..4821622815726.0755672-CDS-M-pyrifera_M_contig120653:8..482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120653 9..482 -
1692277540.3113182-CDS-M-pyrifera_M_contig120653:8..4821692277540.3113182-CDS-M-pyrifera_M_contig120653:8..482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120653 9..482 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120653.4254.1prot_M-pyrifera_M_contig120653.4254.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120653 9..482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120653.4254.1

>prot_M-pyrifera_M_contig120653.4254.1 ID=prot_M-pyrifera_M_contig120653.4254.1|Name=mRNA_M-pyrifera_M_contig120653.4254.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=158bp
PASDDPVVVCGGNTVTITTTTGLNASAIEIAGTLTSQVANLSTIGNIDGT
GSLAFNTITSTPIFGAMSGTFIGASGGTVDYGGGGAYTLPTQSTYNNLTI
SNANTTTLGANVTVNGDATFNGSRVDMSTFTLSNADNGGTFTLGSGTTLR
VEGPSNFP
back to top

mRNA from alignment at M-pyrifera_M_contig120653:9..482-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120653.4254.1 ID=mRNA_M-pyrifera_M_contig120653.4254.1|Name=mRNA_M-pyrifera_M_contig120653.4254.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig120653:9..482- (Macrocystis pyrifera P11B4 male)
CCAGCATCTGATGACCCTGTAGTAGTATGTGGAGGAAACACGGTTACCAT
CACAACAACCACTGGCTTGAATGCCTCGGCAATTGAAATTGCAGGTACGC
TTACGTCGCAAGTAGCTAACTTATCAACCATTGGCAATATTGATGGAACA
GGATCACTTGCCTTCAATACTATTACTTCTACACCTATATTCGGAGCCAT
GTCAGGCACTTTTATTGGTGCATCGGGCGGAACGGTAGATTATGGAGGAG
GTGGAGCCTATACCCTACCCACCCAGTCTACGTACAACAACTTGACCATT
TCGAATGCCAATACAACGACACTTGGTGCAAATGTAACTGTCAATGGTGA
TGCAACCTTCAATGGCTCAAGAGTAGATATGAGCACGTTTACTCTAAGCA
ATGCGGATAATGGAGGCACCTTTACGTTAGGATCAGGAACTACATTAAGA
GTGGAAGGGCCAAGCAACTTCCCT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig120653:9..482-

>mRNA_M-pyrifera_M_contig120653.4254.1 ID=mRNA_M-pyrifera_M_contig120653.4254.1|Name=mRNA_M-pyrifera_M_contig120653.4254.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=948bp|location=Sequence derived from alignment at M-pyrifera_M_contig120653:9..482- (Macrocystis pyrifera P11B4 male)
CCAGCATCTGATGACCCTGTAGTAGTATGTGGAGGAAACACGGTTACCAT
CACAACAACCACTGGCTTGAATGCCTCGGCAATTGAAATTGCAGGTACGC
TTACGTCGCAAGTAGCTAACTTATCAACCATTGGCAATATTGATGGAACA
GGATCACTTGCCTTCAATACTATTACTTCTACACCTATATTCGGAGCCAT
GTCAGGCACTTTTATTGGTGCATCGGGCGGAACGGTAGATTATGGAGGAG
GTGGAGCCTATACCCTACCCACCCAGTCTACGTACAACAACTTGACCATT
TCGAATGCCAATACAACGACACTTGGTGCAAATGTAACTGTCAATGGTGA
TGCAACCTTCAATGGCTCAAGAGTAGATATGAGCACGTTTACTCTAAGCA
ATGCGGATAATGGAGGCACCTTTACGTTAGGATCAGGAACTACATTAAGA
GTGGAAGGGCCAAGCAACTTCCCTCCAGCATCTGATGACCCTGTAGTAGT
ATGTGGAGGAAACACGGTTACCATCACAACAACCACTGGCTTGAATGCCT
CGGCAATTGAAATTGCAGGTACGCTTACGTCGCAAGTAGCTAACTTATCA
ACCATTGGCAATATTGATGGAACAGGATCACTTGCCTTCAATACTATTAC
TTCTACACCTATATTCGGAGCCATGTCAGGCACTTTTATTGGTGCATCGG
GCGGAACGGTAGATTATGGAGGAGGTGGAGCCTATACCCTACCCACCCAG
TCTACGTACAACAACTTGACCATTTCGAATGCCAATACAACGACACTTGG
TGCAAATGTAACTGTCAATGGTGATGCAACCTTCAATGGCTCAAGAGTAG
ATATGAGCACGTTTACTCTAAGCAATGCGGATAATGGAGGCACCTTTACG
TTAGGATCAGGAACTACATTAAGAGTGGAAGGGCCAAGCAACTTCCCT
back to top