mRNA_M-pyrifera_M_contig120651.4253.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120651.4253.1
Unique NamemRNA_M-pyrifera_M_contig120651.4253.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120651.4253.1 vs. uniprot
Match: A0A482S3B6_9ARCH (Acyl_transf_3 domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S3B6_9ARCH)

HSP 1 Score: 76.6 bits (187), Expect = 5.920e-15
Identity = 60/158 (37.97%), Postives = 78/158 (49.37%), Query Frame = 1
Query:    1 VDMDALTGLRGVVALHIVVFHSVLFS-VGWDWQGSAEMPWFFLLSGFCLAVVYGALPVRG-------------GCGWRE----KEISCWKFLWNRGVRVMPTTWLTHALAAPLSWFGYGDVSPL--FRTTAVIFSIVPLSTATIILPVFN--GPAWTV 408
            VD+    GLRG++A+ ++VFH V+FS    D QGS+ MP F +LSGF L V YG   V                 G R     K +   KF  NR VR++P  +L    A PL   GYG  SP   +   ++I S +PL T  I L   +  GP WTV
Sbjct:    2 VDLQGQHGLRGLLAVWVMVFHCVIFSKCPVDLQGSSLMPMFIMLSGFSLTVAYGKKDVAEYQQVESYYHEEGQSDGVRHNVARKPLDFIKFYHNRLVRLIPVYYLCSLSAIPLWLAGYGSASPHSDYFLMSIISSFLPLCTFFIFLAGSSLVGPGWTV 159          
BLAST of mRNA_M-pyrifera_M_contig120651.4253.1 vs. uniprot
Match: A0A0G4G4R9_9ALVE (Acyl_transf_3 domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G4R9_9ALVE)

HSP 1 Score: 79.3 bits (194), Expect = 7.910e-15
Identity = 51/139 (36.69%), Postives = 73/139 (52.52%), Query Frame = 1
Query:    4 DMDALTGLRGVVALHIVVFHSVLF----SVGWDWQGSAEMPWFFLLSGFCLAVVYGALPVRGGCGWREKEISCWKFLWNRGVRVMPTTWLTHALAAPLSWFGYGDVSPLFRTTAVIFSIVPLSTATIILPVFNGPAWTV 408
            ++D L+GLRG+ A++I++ H +LF    SV        +MP+FFLLSGFCLA        RGG G        W F W R  RV PT  LT+ LA PL + GY D  P      +  ++   +T  + + + N  +WT+
Sbjct:   35 NLDTLSGLRGLCAVYIMIGHGLLFCTASSVLPRLFVPVQMPFFFLLSGFCLATANDR-SARGGEG---AHFDYWNFHWKRFARVYPTYILTNLLAVPLVFSGYTDAKPPSWPRMIPLALTCTATWGLFVHIPNVASWTI 169          
BLAST of mRNA_M-pyrifera_M_contig120651.4253.1 vs. uniprot
Match: A0A7S1XLF3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLF3_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.030e-14
Identity = 52/135 (38.52%), Postives = 67/135 (49.63%), Query Frame = 1
Query:    1 VDMDALTGLRGVVALHIVVFHSVLFS-VGWDWQGSAEMPWFFLLSGFCLAVVYGALPVR-----------GGCGWREK------------------EISCWKFLWNRGVRVMPTTWLTHALAAPLSWFGYGDVSP 315
            VDM   TGLRGV A+ I+VFH ++FS    D+QGS+ MP F +LSGF LAVVYGA P++           G C    K                  E    +F+ NR  RV P  +L   +A PL++ GY    P
Sbjct:   47 VDMTTHTGLRGVAAIWIMVFHCIIFSDAQLDFQGSSIMPLFIMLSGFSLAVVYGARPMKLTDRGTGVCCCGPCSTDPKIENPNIVNGREFRNDVLPEFHWSRFMQNRLARVGPVYYLGLLIALPLAYVGYNTSVP 181          
BLAST of mRNA_M-pyrifera_M_contig120651.4253.1 vs. uniprot
Match: A0A7S2QUT0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QUT0_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.040e-9
Identity = 37/83 (44.58%), Postives = 46/83 (55.42%), Query Frame = 1
Query:    1 VDMDALTGLRGVVALHIVVFHSVLFSVGWDWQGSAEMPWFFLLSGFCLAVVYGALPVRGGCGWREKEISCWKFLWNRGVRVMP 249
            VD DALTGLRG  ALHI++ H   F+ G D  G A M +F+LLSGF + V YG         W   +     FL NR  R++P
Sbjct:   25 VDTDALTGLRGATALHIMLGHYSGFNYGIDGLGGASMSFFYLLSGFVMTVAYGKKSTDPTKPWLPFKYGT--FLRNRFARLLP 105          
BLAST of mRNA_M-pyrifera_M_contig120651.4253.1 vs. uniprot
Match: A0A812YWS0_9DINO (MdmB protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812YWS0_9DINO)

HSP 1 Score: 58.9 bits (141), Expect = 1.930e-7
Identity = 38/92 (41.30%), Postives = 51/92 (55.43%), Query Frame = 1
Query:    1 VDMDALTGLRGVVALHIVVFHSVLFS-VGWDWQGSAEMPWFFLLSGFCLAVVYGALPVRGGCGWREKEISCWKFLWNRGVRVMPTTWLTHAL 273
            VD  ALTGLRG+ ALH+   H +  S +  D  G A M +F+LLSGF + + Y    V GG   R  + +  +F  NR  R+ P   LT+AL
Sbjct:   22 VDTLALTGLRGLAALHVAFGHYIAGSPIHVDLIGGASMSFFYLLSGFVMTLGYAKDLVAGGESSRIADFNKRRFWRNRFARLFPMYVLTNAL 113          
BLAST of mRNA_M-pyrifera_M_contig120651.4253.1 vs. uniprot
Match: A0A812X343_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812X343_SYMMI)

HSP 1 Score: 58.2 bits (139), Expect = 3.250e-7
Identity = 38/92 (41.30%), Postives = 51/92 (55.43%), Query Frame = 1
Query:    1 VDMDALTGLRGVVALHIVVFHSVLFS-VGWDWQGSAEMPWFFLLSGFCLAVVYGALPVRGGCGWREKEISCWKFLWNRGVRVMPTTWLTHAL 273
            VD  ALTGLRG+ ALH+   H +  S +  D  G A M +F+LLSGF + + Y    V GG   R  + +  +F  NR  R+ P   LT+AL
Sbjct:   57 VDTLALTGLRGLAALHVAFGHYIAGSPLHVDLIGGASMSFFYLLSGFVMTLGYAKDLVAGGESSRIADFNKSRFWRNRFARLFPMYVLTNAL 148          
BLAST of mRNA_M-pyrifera_M_contig120651.4253.1 vs. uniprot
Match: A0A813CSW6_9DINO (MdmB protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813CSW6_9DINO)

HSP 1 Score: 58.2 bits (139), Expect = 3.650e-7
Identity = 38/92 (41.30%), Postives = 51/92 (55.43%), Query Frame = 1
Query:    1 VDMDALTGLRGVVALHIVVFHSVLFS-VGWDWQGSAEMPWFFLLSGFCLAVVYGALPVRGGCGWREKEISCWKFLWNRGVRVMPTTWLTHAL 273
            VD  ALTGLRG+ ALH+   H +  S +  D  G A M +F+LLSGF + + Y    V GG   R  + +  +F  NR  R+ P   LT+AL
Sbjct:   22 VDTLALTGLRGLAALHVAFGHYIAGSPLHVDLIGGASMSFFYLLSGFVMTLGYAKDLVAGGESSRIADFNKSRFWRNRFARLFPMYVLTNAL 113          
BLAST of mRNA_M-pyrifera_M_contig120651.4253.1 vs. uniprot
Match: A0A1Q9ER67_SYMMI (Acyl_transf_3 domain-containing protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9ER67_SYMMI)

HSP 1 Score: 58.2 bits (139), Expect = 3.680e-7
Identity = 38/92 (41.30%), Postives = 51/92 (55.43%), Query Frame = 1
Query:    1 VDMDALTGLRGVVALHIVVFHSVLFS-VGWDWQGSAEMPWFFLLSGFCLAVVYGALPVRGGCGWREKEISCWKFLWNRGVRVMPTTWLTHAL 273
            VD  ALTGLRG+ ALH+   H +  S +  D  G A M +F+LLSGF + + Y    V GG   R  + +  +F  NR  R+ P   LT+AL
Sbjct:  416 VDTLALTGLRGLAALHVAFGHYIAGSPLHVDLIGGASMSFFYLLSGFVMTLGYAKDLVAGGESSRIADFNKSRFWRNRFARLFPMYVLTNAL 507          
BLAST of mRNA_M-pyrifera_M_contig120651.4253.1 vs. uniprot
Match: A0A8J3QST8_9ACTN (Acyl_transf_3 domain-containing protein n=1 Tax=Rugosimonospora africana TaxID=556532 RepID=A0A8J3QST8_9ACTN)

HSP 1 Score: 56.2 bits (134), Expect = 1.450e-6
Identity = 42/146 (28.77%), Postives = 63/146 (43.15%), Query Frame = 1
Query:    7 MDALTGLRGVVALHIVVFHSVLFS------------VGWDWQGSAEMPWFFLLSGFCLAVVYGALPVRGGCGWREKEISCWKFLWNRGVRVMPTTWLTHALAAPLSWFGYGDVSPLFRTTAVIFSIVPLSTATIILPVFNGPAWTV 408
            M  L GLRG+ AL++V+FH  L +            +GW   G   + +FF+LSGF LA+         G GWR   I   +F   R  R++P  W   A +  ++W           T   +    PL    +  P+ NG  W++
Sbjct:    1 MAGLAGLRGLAALYVVLFHCWLLTFPGFPADHGPRWLGWLLYGHLAVVFFFVLSGFSLAIS------PAGDGWRLGGIL--RFARRRAWRILPPYWAALAFSLVIAWTVTPQPHSGPPTARTLLVYGPLLQDIVTAPLPNGAFWSI 138          
BLAST of mRNA_M-pyrifera_M_contig120651.4253.1 vs. uniprot
Match: UPI00055A2417 (acyltransferase n=1 Tax=Muricauda sp. MAR_2010_75 TaxID=1250232 RepID=UPI00055A2417)

HSP 1 Score: 52.0 bits (123), Expect = 4.320e-5
Identity = 40/117 (34.19%), Postives = 59/117 (50.43%), Query Frame = 1
Query:    7 MDALTGLRGVVALHIVVFH--SVLFSVGWDW-----------QGSAEMPWFFLLSGFCLAVVYGALPVRGGCGWREKEISCWKFLWNRGVRVMPT---TWLTHALAAPLSWFGYGDV 309
            +DALT LRG+ A+ +VV+H   +    G D+           +G   + +FFLLSGF LA VYG    + G   +    + WK+LW R  R+ P      LTH + A +   G+ +V
Sbjct:    7 IDALTPLRGIAAIWVVVYHYDQLTTFTGLDYLVSPKTTLLLSKGYLFVDFFFLLSGFILAHVYGE-RFQNGINLK----NAWKYLWARFSRLYPLHIFCLLTHIVVAIVLVIGFPNV 118          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120651.4253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A482S3B6_9ARCH5.920e-1537.97Acyl_transf_3 domain-containing protein (Fragment)... [more]
A0A0G4G4R9_9ALVE7.910e-1536.69Acyl_transf_3 domain-containing protein n=1 Tax=Ch... [more]
A0A7S1XLF3_9STRA2.030e-1438.52Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2QUT0_9STRA2.040e-944.58Hypothetical protein (Fragment) n=1 Tax=Triparma p... [more]
A0A812YWS0_9DINO1.930e-741.30MdmB protein n=1 Tax=Symbiodinium sp. CCMP2592 Tax... [more]
A0A812X343_SYMMI3.250e-741.30Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A813CSW6_9DINO3.650e-741.30MdmB protein n=2 Tax=Symbiodinium TaxID=2949 RepID... [more]
A0A1Q9ER67_SYMMI3.680e-741.30Acyl_transf_3 domain-containing protein n=1 Tax=Sy... [more]
A0A8J3QST8_9ACTN1.450e-628.77Acyl_transf_3 domain-containing protein n=1 Tax=Ru... [more]
UPI00055A24174.320e-534.19acyltransferase n=1 Tax=Muricauda sp. MAR_2010_75 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120651contigM-pyrifera_M_contig120651:2..463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue2.3e-13
Seed eggNOG ortholog44056.XP_009033047.1
Preferred nameRRP1B
KEGG koko:K14849
Hectar predicted targeting categorysignal peptide
GOsGO:0000785,GO:0000791,GO:0000792,GO:0001652,GO:0003674,GO:0003712,GO:0003713,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009615,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010563,GO:0010604,GO:0010628,GO:0010921,GO:0010923,GO:0010941,GO:0010942,GO:0016070,GO:0016072,GO:0019219,GO:0019220,GO:0019222,GO:0022613,GO:0030684,GO:0030687,GO:0030688,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0034260,GO:0034470,GO:0034641,GO:0034660,GO:0035303,GO:0035305,GO:0035821,GO:0042254,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043087,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043900,GO:0043902,GO:0043903,GO:0043921,GO:0043923,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045893,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0046782,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0050434,GO:0050789,GO:0050790,GO:0050792,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051252,GO:0051254,GO:0051336,GO:0051346,GO:0051702,GO:0051704,GO:0051707,GO:0051817,GO:0051851,GO:0052312,GO:0052472,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098586,GO:0140110,GO:1901360,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.rRNA processing
EggNOG OGsKOG3911@1,KOG3911@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03009
Exons2
Model size408
Cds size402
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120651.4253.1prot_M-pyrifera_M_contig120651.4253.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120651 2..457 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815726.012696-CDS-M-pyrifera_M_contig120651:1..2221622815726.012696-CDS-M-pyrifera_M_contig120651:1..222Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120651 2..222 -
1692277540.279278-CDS-M-pyrifera_M_contig120651:1..2221692277540.279278-CDS-M-pyrifera_M_contig120651:1..222Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120651 2..222 -
1622815726.0249681-CDS-M-pyrifera_M_contig120651:276..4571622815726.0249681-CDS-M-pyrifera_M_contig120651:276..457Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120651 277..457 -
1692277540.288778-CDS-M-pyrifera_M_contig120651:276..4571692277540.288778-CDS-M-pyrifera_M_contig120651:276..457Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120651 277..457 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815726.0380218-UTR-M-pyrifera_M_contig120651:457..4631622815726.0380218-UTR-M-pyrifera_M_contig120651:457..463Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig120651 458..463 -
1692277540.2961965-UTR-M-pyrifera_M_contig120651:457..4631692277540.2961965-UTR-M-pyrifera_M_contig120651:457..463Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig120651 458..463 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120651.4253.1

>prot_M-pyrifera_M_contig120651.4253.1 ID=prot_M-pyrifera_M_contig120651.4253.1|Name=mRNA_M-pyrifera_M_contig120651.4253.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
MDALTGLRGVVALHIVVFHSVLFSVGWDWQGSAEMPWFFLLSGFCLAVVY
GALPVRGGCGWREKEISCWKFLWNRGVRVMPTTWLTHALAAPLSWFGYGD
VSPLFRTTAVIFSIVPLSTATIILPVFNGPAWTV
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mRNA from alignment at M-pyrifera_M_contig120651:2..463-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120651.4253.1 ID=mRNA_M-pyrifera_M_contig120651.4253.1|Name=mRNA_M-pyrifera_M_contig120651.4253.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig120651:2..463- (Macrocystis pyrifera P11B4 male)
GTGGATATGGACGCATTGACTGGACTTCGTGGTGTGGTTGCGCTGCATAT TGTTGTTTTCCACAGTGTACTATTTTCTGTGGGTTGGGATTGGCAAGGTT CAGCCGAAATGCCTTGGTTCTTCTTGCTCTCTGGTTTCTGCCTAGCAGTG GTGTATGGTGCGCTTCCAGTGCGAGGAGGGTGTGGATGTGTGACATGCTG GGCAGAGAGTGGGGGTGATGGTGGGGGTGTGGAGGTGGAAGGGAGGGAAA AAGAGATTTCTTGCTGGAAATTCTTGTGGAATCGTGGTGTGAGAGTGATG CCAACGACGTGGCTCACGCATGCCCTCGCAGCTCCATTGTCTTGGTTTGG GTATGGTGATGTGAGTCCATTGTTCCGCACGACTGCAGTCATCTTCTCCA TCGTGCCTCTTTCCACCGCAACCATCATCCTTCCTGTTTTCAATGGCCCT GCTTGGACCGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120651:2..463-

>mRNA_M-pyrifera_M_contig120651.4253.1 ID=mRNA_M-pyrifera_M_contig120651.4253.1|Name=mRNA_M-pyrifera_M_contig120651.4253.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig120651:2..463- (Macrocystis pyrifera P11B4 male)
ATGGACGCATTGACTGGACTTCGTGGTGTGGTTGCGCTGCATATTGTTGT
TTTCCACAGTGTACTATTTTCTGTGGGTTGGGATTGGCAAGGTTCAGCCG
AAATGCCTTGGTTCTTCTTGCTCTCTGGTTTCTGCCTAGCAGTGGTGTAT
GGTGCGCTTCCAGTGCGAGGAGGGTGTGGATATGGACGCATTGACTGGAC
TTCGTGGTGTGGTTGCGCTGCATATTGTTGTTTTCCACAGTGTACTATTT
TCTGTGGGTTGGGATTGGCAAGGTTCAGCCGAAATGCCTTGGTTCTTCTT
GCTCTCTGGTTTCTGCCTAGCAGTGGTGTATGGTGCGCTTCCAGTGCGAG
GAGGGTGTGGATGGAGGGAAAAAGAGATTTCTTGCTGGAAATTCTTGTGG
AATCGTGGTGTGAGAGTGATGCCAACGACGTGGCTCACGCATGCCCTCGC
AGCTCCATTGTCTTGGTTTGGGTATGGTGATGTGAGTCCATTGTTCCGCA
CGACTGCAGTCATCTTCTCCATCGTGCCTCTTTCCACCGCAACCATCATC
CTTCCTGTTTTCAATGGCCCTGCTTGGACCGTGGGAGGGAAAAAGAGATT
TCTTGCTGGAAATTCTTGTGGAATCGTGGTGTGAGAGTGATGCCAACGAC
GTGGCTCACGCATGCCCTCGCAGCTCCATTGTCTTGGTTTGGGTATGGTG
ATGTGAGTCCATTGTTCCGCACGACTGCAGTCATCTTCTCCATCGTGCCT
CTTTCCACCGCAACCATCATCCTTCCTGTTTTCAATGGCCCTGCTTGGAC
CGTG
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