mRNA_M-pyrifera_M_contig12064.4248.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12064.4248.1
Unique NamemRNA_M-pyrifera_M_contig12064.4248.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12064.4248.1 vs. uniprot
Match: A0A7R9GFV8_9CRUS (Guanylate kinase n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9GFV8_9CRUS)

HSP 1 Score: 50.4 bits (119), Expect = 4.560e-6
Identity = 24/40 (60.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 RGTETEDALTRRLANAKAEMDFGTAPGNFEEVRGASDDLE 120
            RGT+++DA+ RRLA A+AEMD+GT PGNF+ +   +DDLE
Sbjct:  189 RGTDSDDAIERRLAVARAEMDYGTEPGNFD-LLVVNDDLE 227
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BLAST of mRNA_M-pyrifera_M_contig12064.4248.1 vs. uniprot
Match: A0A6S9DTC0_HETAK (Guanylate kinase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9DTC0_HETAK)

HSP 1 Score: 49.3 bits (116), Expect = 1.320e-5
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 RGTETEDALTRRLANAKAEMDFGTAPGNFEEVRGASDDLE 120
            RGTETE+AL RRL NAKAE+++GT+ G F+ V   +DDLE
Sbjct:  213 RGTETEEALERRLGNAKAEIEYGTSQGVFDAVI-VNDDLE 251
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BLAST of mRNA_M-pyrifera_M_contig12064.4248.1 vs. uniprot
Match: B8BXT9_THAPS (Guanylate kinase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXT9_THAPS)

HSP 1 Score: 48.5 bits (114), Expect = 2.290e-5
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 RGTETEDALTRRLANAKAEMDFGTAPGNFEEVRGASDDLE 120
            RGTETE+A+ +RL NAK E+DFG   GNF+ V   +DDL+
Sbjct:  187 RGTETEEAVLKRLGNAKVELDFGLGEGNFDRVF-TNDDLD 225
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BLAST of mRNA_M-pyrifera_M_contig12064.4248.1 vs. uniprot
Match: A0A7R9WY81_9STRA (Guanylate kinase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WY81_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 3.050e-5
Identity = 22/40 (55.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 RGTETEDALTRRLANAKAEMDFGTAPGNFEEVRGASDDLE 120
            RGTETE+A+T+RL N+K E+++G   GNF++V   +DDLE
Sbjct:  177 RGTETEEAITKRLKNSKEELEYGNEEGNFDKVF-VNDDLE 215
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BLAST of mRNA_M-pyrifera_M_contig12064.4248.1 vs. uniprot
Match: A0A7R9ZPL3_9STRA (Guanylate kinase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZPL3_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 3.320e-5
Identity = 22/40 (55.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 RGTETEDALTRRLANAKAEMDFGTAPGNFEEVRGASDDLE 120
            RGTETE+A+T+RL N+K E+++G   GNF++V   +DDLE
Sbjct:  204 RGTETEEAITKRLKNSKEELEYGNEEGNFDKVF-VNDDLE 242
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BLAST of mRNA_M-pyrifera_M_contig12064.4248.1 vs. uniprot
Match: D8LGX2_ECTSI (Guanylate kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGX2_ECTSI)

HSP 1 Score: 47.8 bits (112), Expect = 4.660e-5
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:    1 RGTETEDALTRRLANAKAEMDFGTAPGNFEEV 96
            RGTETE+AL RRLANA AEM++G    NFE+V
Sbjct:  202 RGTETEEALQRRLANANAEMEYGLEADNFEKV 233
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BLAST of mRNA_M-pyrifera_M_contig12064.4248.1 vs. uniprot
Match: A0A7S2A1S3_TRICV (Guanylate kinase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A1S3_TRICV)

HSP 1 Score: 46.6 bits (109), Expect = 8.240e-5
Identity = 20/32 (62.50%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:    1 RGTETEDALTRRLANAKAEMDFGTAPGNFEEV 96
            RGTETE+A+  R ANA AE+++GT PGNF+ V
Sbjct:  119 RGTETEEAIRIRTANAAAEVEYGTTPGNFDAV 150
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12064.4248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7R9GFV8_9CRUS4.560e-660.00Guanylate kinase n=1 Tax=Notodromas monacha TaxID=... [more]
A0A6S9DTC0_HETAK1.320e-562.50Guanylate kinase n=1 Tax=Heterosigma akashiwo TaxI... [more]
B8BXT9_THAPS2.290e-557.50Guanylate kinase n=1 Tax=Thalassiosira pseudonana ... [more]
A0A7R9WY81_9STRA3.050e-555.00Guanylate kinase n=1 Tax=Craspedostauros australis... [more]
A0A7R9ZPL3_9STRA3.320e-555.00Guanylate kinase n=1 Tax=Craspedostauros australis... [more]
D8LGX2_ECTSI4.660e-568.75Guanylate kinase n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A7S2A1S3_TRICV8.240e-562.50Guanylate kinase n=1 Tax=Trieres chinensis TaxID=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12064contigM-pyrifera_M_contig12064:8642..8770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size129
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815725.8238876-CDS-M-pyrifera_M_contig12064:8641..87701622815725.8238876-CDS-M-pyrifera_M_contig12064:8641..8770Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12064 8642..8770 -
1692277540.2038493-CDS-M-pyrifera_M_contig12064:8641..87701692277540.2038493-CDS-M-pyrifera_M_contig12064:8641..8770Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12064 8642..8770 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12064.4248.1prot_M-pyrifera_M_contig12064.4248.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12064 8642..8770 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12064.4248.1

>prot_M-pyrifera_M_contig12064.4248.1 ID=prot_M-pyrifera_M_contig12064.4248.1|Name=mRNA_M-pyrifera_M_contig12064.4248.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=43bp
RGTETEDALTRRLANAKAEMDFGTAPGNFEEVRGASDDLEGE*
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mRNA from alignment at M-pyrifera_M_contig12064:8642..8770-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12064.4248.1 ID=mRNA_M-pyrifera_M_contig12064.4248.1|Name=mRNA_M-pyrifera_M_contig12064.4248.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=129bp|location=Sequence derived from alignment at M-pyrifera_M_contig12064:8642..8770- (Macrocystis pyrifera P11B4 male)
AGGGGGACGGAGACGGAGGATGCCCTCACGCGGCGATTGGCCAACGCCAA
GGCGGAAATGGACTTCGGGACGGCGCCCGGAAACTTCGAGGAGGTAAGAG
GCGCGAGCGACGACCTCGAGGGTGAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12064:8642..8770-

>mRNA_M-pyrifera_M_contig12064.4248.1 ID=mRNA_M-pyrifera_M_contig12064.4248.1|Name=mRNA_M-pyrifera_M_contig12064.4248.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig12064:8642..8770- (Macrocystis pyrifera P11B4 male)
AGGGGGACGGAGACGGAGGATGCCCTCACGCGGCGATTGGCCAACGCCAA
GGCGGAAATGGACTTCGGGACGGCGCCCGGAAACTTCGAGGAGGTAAGAG
GCGCGAGCGACGACCTCGAGGGTGAATGAAGGGGGACGGAGACGGAGGAT
GCCCTCACGCGGCGATTGGCCAACGCCAAGGCGGAAATGGACTTCGGGAC
GGCGCCCGGAAACTTCGAGGAGGTAAGAGGCGCGAGCGACGACCTCGAGG
GTGAATGA
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