mRNA_M-pyrifera_M_contig120609.4244.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120609.4244.1
Unique NamemRNA_M-pyrifera_M_contig120609.4244.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120609.4244.1 vs. uniprot
Match: A0A3R7A847_9STRA (Uncharacterized protein n=12 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7A847_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 5.470e-7
Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:    7 LTHLELSYTEHVGDTVLASLGRHCPRLQLLGLNGCFELTDVSMKALANSCPSL 165
            LT L L++T  V D  L +LG+HCP L++L LNGC ++TDV +  L    P L
Sbjct:  380 LTRLNLTHTHGVSDAGLMALGKHCPHLEVLTLNGCCDITDVGVTHLVQYVPVL 432
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BLAST of mRNA_M-pyrifera_M_contig120609.4244.1 vs. uniprot
Match: W4H3S9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H3S9_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 5.510e-7
Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:    7 LTHLELSYTEHVGDTVLASLGRHCPRLQLLGLNGCFELTDVSMKALANSCPSL 165
            LT L L++T  V D  L +LG+HCP L++L LNGC ++TDV +  L    P L
Sbjct:  377 LTRLNLTHTHGVSDAGLMALGKHCPHLEVLTLNGCCDITDVGVTHLVQYVPVL 429
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BLAST of mRNA_M-pyrifera_M_contig120609.4244.1 vs. uniprot
Match: UPI001CA7D2F7 (uncharacterized protein LOC122508626 isoform X1 n=2 Tax=Leptopilina heterotoma TaxID=63436 RepID=UPI001CA7D2F7)

HSP 1 Score: 51.2 bits (121), Expect = 1.250e-5
Identity = 26/76 (34.21%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:    4 NLTHLE-LSYTEH--VGDTVLASLGRHCPRLQLLGLNGCFELTDVSMKALANSCPSLRSLVVEGLESISGEGLGAV 222
            N THLE L ++++  V D +L+++G +CP+L +L +N CF+++DV +  +A   P L+ L +  L  ++G+ L  +
Sbjct:  867 NFTHLERLDFSDNAIVTDEILSAIGANCPKLNVLLINRCFQVSDVGIGGIA-LLPELKHLSMNDLSKVTGKQLSTL 941
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BLAST of mRNA_M-pyrifera_M_contig120609.4244.1 vs. uniprot
Match: A0A835XK83_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XK83_9CHLO)

HSP 1 Score: 50.4 bits (119), Expect = 2.220e-5
Identity = 28/76 (36.84%), Postives = 42/76 (55.26%), Query Frame = 1 
Query:    1 PNLTHLELSYTEHVGDTVLASLGRHCPRLQLLGLNGCFELTDVSMKALANSC-PSLRSLVVEGLESISGEGLGAVL 225
            P L     S  E + D  + ++    P L+L+G+ GC +LTD S+KA+A  C P+L +L    L  +S  GL A+L
Sbjct:  253 PGLLEFGFSGFEALRDGDVDTIASLLPGLRLIGIGGCLDLTDASLKAIAAHCGPTLEALYASDLPLVSPAGLDALL 328
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BLAST of mRNA_M-pyrifera_M_contig120609.4244.1 vs. uniprot
Match: A0A834N9T1_VESGE (RRM domain-containing protein n=4 Tax=Vespula TaxID=7451 RepID=A0A834N9T1_VESGE)

HSP 1 Score: 50.1 bits (118), Expect = 3.120e-5
Identity = 24/73 (32.88%), Postives = 41/73 (56.16%), Query Frame = 1 
Query:    4 NLTHLELSYTEHVGDTVLASLGRHCPRLQLLGLNGCFELTDVSMKALANSCPSLRSLVVEGLESISGEGLGAV 222
            NL  L L     + D  L +L   C +L  L +NGC+ +TD  ++A+A + P L +L++  LE ++  GL ++
Sbjct:  395 NLEILRLIQNGFINDDFLIALASKCKQLIYLDINGCYNVTDTGLQAVA-TLPKLETLIINNLEKVTAVGLDSM 466
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BLAST of mRNA_M-pyrifera_M_contig120609.4244.1 vs. uniprot
Match: A0A1B6H144_9HEMI (RRM domain-containing protein n=2 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6H144_9HEMI)

HSP 1 Score: 48.9 bits (115), Expect = 8.080e-5
Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 1 
Query:    1 PNLTHLELSYTEHVGDTVLASLGRHCPRLQLLGLNGCFELTDVSMKALANSCPSLRSLVVEGLESISGEGL 213
            PNL  L ++   H+ +  LA LGR CPRL+ L ++GC + +D  + +L   C  L  L +     ISG+ L
Sbjct:  318 PNLEILRIANV-HLANRSLAHLGRRCPRLKELVMDGCSKFSDADLMSLLPKCKKLDYLELSNTNGISGKCL 387
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120609.4244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A3R7A847_9STRA5.470e-747.17Uncharacterized protein n=12 Tax=Aphanomyces astac... [more]
W4H3S9_9STRA5.510e-747.17Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
UPI001CA7D2F71.250e-534.21uncharacterized protein LOC122508626 isoform X1 n=... [more]
A0A835XK83_9CHLO2.220e-536.84Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A834N9T1_VESGE3.120e-532.88RRM domain-containing protein n=4 Tax=Vespula TaxI... [more]
A0A1B6H144_9HEMI8.080e-536.62RRM domain-containing protein n=2 Tax=Cuerna arida... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120609contigM-pyrifera_M_contig120609:201..512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815725.6571727-CDS-M-pyrifera_M_contig120609:200..3141622815725.6571727-CDS-M-pyrifera_M_contig120609:200..314Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120609 201..314 -
1692277540.1369374-CDS-M-pyrifera_M_contig120609:200..3141692277540.1369374-CDS-M-pyrifera_M_contig120609:200..314Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120609 201..314 -
1622815725.6724536-CDS-M-pyrifera_M_contig120609:395..5121622815725.6724536-CDS-M-pyrifera_M_contig120609:395..512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120609 396..512 -
1692277540.146303-CDS-M-pyrifera_M_contig120609:395..5121692277540.146303-CDS-M-pyrifera_M_contig120609:395..512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120609 396..512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120609.4244.1prot_M-pyrifera_M_contig120609.4244.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120609 201..512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120609.4244.1

>prot_M-pyrifera_M_contig120609.4244.1 ID=prot_M-pyrifera_M_contig120609.4244.1|Name=mRNA_M-pyrifera_M_contig120609.4244.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
PNLTHLELSYTEHVGDTVLASLGRHCPRLQLLGLNGCFELTDVSMKALAN
SCPSLRSLVVEGLESISGEGLGAVLLK
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mRNA from alignment at M-pyrifera_M_contig120609:201..512-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120609.4244.1 ID=mRNA_M-pyrifera_M_contig120609.4244.1|Name=mRNA_M-pyrifera_M_contig120609.4244.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig120609:201..512- (Macrocystis pyrifera P11B4 male)
CCCAACCTCACGCACCTGGAGCTGTCCTACACCGAGCACGTTGGAGACAC
GGTGCTGGCTTCTCTGGGGAGGCATTGTCCGCGGCTGCAACTGCTGGGGC
TCAACGGGTGCTTCGAGGTCACTGACGTTGGATTCGCCGAGGGATTGCTG
CCCCACTGCTCGCAGCTCACTGCGCTCAACATCCGAGGCTGTTCGCAGCT
CACCGACGTGTCGATGAAGGCCTTGGCCAACTCGTGTCCCAGCCTGCGGT
CGCTGGTGGTGGAAGGCCTGGAGAGCATTTCCGGCGAGGGTCTGGGGGCA
GTGTTGCTCAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120609:201..512-

>mRNA_M-pyrifera_M_contig120609.4244.1 ID=mRNA_M-pyrifera_M_contig120609.4244.1|Name=mRNA_M-pyrifera_M_contig120609.4244.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig120609:201..512- (Macrocystis pyrifera P11B4 male)
CCCAACCTCACGCACCTGGAGCTGTCCTACACCGAGCACGTTGGAGACAC
GGTGCTGGCTTCTCTGGGGAGGCATTGTCCGCGGCTGCAACTGCTGGGGC
TCAACGGGTGCTTCGAGCCCAACCTCACGCACCTGGAGCTGTCCTACACC
GAGCACGTTGGAGACACGGTGCTGGCTTCTCTGGGGAGGCATTGTCCGCG
GCTGCAACTGCTGGGGCTCAACGGGTGCTTCGAGCTCACCGACGTGTCGA
TGAAGGCCTTGGCCAACTCGTGTCCCAGCCTGCGGTCGCTGGTGGTGGAA
GGCCTGGAGAGCATTTCCGGCGAGGGTCTGGGGGCAGTGTTGCTCAAGCT
CACCGACGTGTCGATGAAGGCCTTGGCCAACTCGTGTCCCAGCCTGCGGT
CGCTGGTGGTGGAAGGCCTGGAGAGCATTTCCGGCGAGGGTCTGGGGGCA
GTGTTGCTCAAG
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