mRNA_M-pyrifera_M_contig120605.4243.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120605.4243.1
Unique NamemRNA_M-pyrifera_M_contig120605.4243.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120605.4243.1 vs. uniprot
Match: B7ZGN6_9PHAE (S-adenosylmethionine synthase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGN6_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 7.060e-59
Identity = 94/137 (68.61%), Postives = 107/137 (78.10%), Query Frame = 1 
Query:    1 QIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYGARWAALSLVKAGLCERALVQLSYAIGIAEPLNIYVNSYGTVK--DGRTDEDLVEILKKNFSFTPFALARDLKLKRPQYARTAAGGHFGRPGEGFEWEKPKELTL 405
            +II+DTYGGWGAHGGGAFSGKDPTKVDRSAAY ARW A SLV AGLC R LVQLSYAIG+  PL+I+V+SYGT K   G++DEDLVEI+  NF   P  L RDL L+RP + +TAA GHFGR    F WE PK+LTL
Sbjct:  171 KIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVSAGLCHRVLVQLSYAIGVPYPLSIHVDSYGTAKTRSGKSDEDLVEIINNNFDLRPGCLLRDLSLRRPIFQKTAAYGHFGRTDADFTWEVPKDLTL 307
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BLAST of mRNA_M-pyrifera_M_contig120605.4243.1 vs. uniprot
Match: B9ZZX1_9STRA (S-adenosylmethionine synthase n=2 Tax=Bacillariaceae TaxID=33852 RepID=B9ZZX1_9STRA)

HSP 1 Score: 195 bits (496), Expect = 7.150e-59
Identity = 91/135 (67.41%), Postives = 109/135 (80.74%), Query Frame = 1 
Query:    1 QIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYGARWAALSLVKAGLCERALVQLSYAIGIAEPLNIYVNSYGTVKDGRTDEDLVEILKKNFSFTPFALARDLKLKRPQYARTAAGGHFGRPGEGFEWEKPKELTL 405
            +II+DTYGGWGAHGGGAFSGKD TKVDRSAAY ARW A SLV AGLC+RALVQLSYAIGI+ PL++YV++YGT K+G  D DL++I++KNF   P  + RDL L+RP + +TAA GHFGR    F WEKPK+L L
Sbjct:  251 KIIIDTYGGWGAHGGGAFSGKDTTKVDRSAAYAARWVAKSLVAAGLCKRALVQLSYAIGISHPLSVYVDTYGTTKEGMVDSDLIKIIEKNFDLRPGGIIRDLDLRRPIFRKTAAYGHFGREDPDFTWEKPKKLDL 385
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BLAST of mRNA_M-pyrifera_M_contig120605.4243.1 vs. uniprot
Match: A0A6A5AVN2_9STRA (S-adenosylmethionine synthase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AVN2_9STRA)

HSP 1 Score: 190 bits (483), Expect = 2.130e-58
Identity = 91/135 (67.41%), Postives = 106/135 (78.52%), Query Frame = 1 
Query:    1 QIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYGARWAALSLVKAGLCERALVQLSYAIGIAEPLNIYVNSYGTVKDGRTDEDLVEILKKNFSFTPFALARDLKLKRPQYARTAAGGHFGRPGEGFEWEKPKELTL 405
            +II+DTYGGWGAHGGGAFSGKD TKVDRSAAY ARW A SLV  GL +R +VQLSYAIG++ PL+++++SYGTVK+G TD+DL+EI  KNF   P  L RDLKLKRP   +TAA GHFGR  E F WE  KEL L
Sbjct:  127 KIIIDTYGGWGAHGGGAFSGKDSTKVDRSAAYAARWVAKSLVHQGLAKRVIVQLSYAIGVSHPLSVHIDSYGTVKEGLTDDDLIEITNKNFDLRPGCLQRDLKLKRPILQKTAAYGHFGRDHEDFTWEHVKELQL 261
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BLAST of mRNA_M-pyrifera_M_contig120605.4243.1 vs. uniprot
Match: A0A7S2L8I5_9STRA (Methionine adenosyltransferase (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L8I5_9STRA)

HSP 1 Score: 187 bits (474), Expect = 2.600e-58
Identity = 90/131 (68.70%), Postives = 103/131 (78.63%), Query Frame = 1 
Query:    1 QIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYGARWAALSLVKAGLCERALVQLSYAIGIAEPLNIYVNSYGTVKDGRTDEDLVEILKKNFSFTPFALARDLKLKRPQYARTAAGGHFGRPGEGFEWEKPK 393
            +II+DTYGGWGAHGGGAFSGKD TKVDRSAAY ARW A +LV  GLC RALVQLSYAIG+  PL+I+V+SYGTVKDGR+D DL EI+KKNF   P  + RDL L+RP   +TAA GHFGR  + F WE  K
Sbjct:   35 KIIIDTYGGWGAHGGGAFSGKDTTKVDRSAAYAARWVAKNLVANGLCRRALVQLSYAIGVPYPLSIFVDSYGTVKDGRSDSDLTEIVKKNFDLRPGCIIRDLNLRRPVLKKTAAYGHFGRADDDFTWEAIK 165
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BLAST of mRNA_M-pyrifera_M_contig120605.4243.1 vs. uniprot
Match: A0A7S3PL16_9STRA (S-adenosylmethionine synthase n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PL16_9STRA)

HSP 1 Score: 192 bits (489), Expect = 8.860e-58
Identity = 89/133 (66.92%), Postives = 109/133 (81.95%), Query Frame = 1 
Query:    1 QIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYGARWAALSLVKAGLCERALVQLSYAIGIAEPLNIYVNSYGTVKDGRTDEDLVEILKKNFSFTPFALARDLKLKRPQYARTAAGGHFGRPGEGFEWEKPKEL 399
            +IIVDTYGGWGAHGGGAFSGKDPTKVDRSAAY ARW A SLVKAG C+R LVQL+Y IG+AEP++++V +YGTV +G+T++DLV+I+KKNF   P  L RD+KLK P Y++T+  GHFGR    F WE+PK L
Sbjct:  255 KIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVKAGFCKRCLVQLAYGIGVAEPISVHVETYGTVAEGKTEKDLVKIVKKNFDLRPGCLIRDMKLKTPIYSKTSCYGHFGRAEPEFIWEQPKAL 387
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BLAST of mRNA_M-pyrifera_M_contig120605.4243.1 vs. uniprot
Match: A0A7S2WA99_9STRA (Methionine adenosyltransferase n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2WA99_9STRA)

HSP 1 Score: 184 bits (467), Expect = 1.120e-57
Identity = 89/135 (65.93%), Postives = 107/135 (79.26%), Query Frame = 1 
Query:    1 QIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYGARWAALSLVKAGLCERALVQLSYAIGIAEPLNIYVNSYGTVKDGRTDEDLVEILKKNFSFTPFALARDLKLKRPQYARTAAGGHFGRPGEGFEWEKPKELTL 405
            +II+DTYGGWGAHGGGAFSGKD TKVDRSAAY ARWAA SLV AGLC RALVQ+SYAIG+ +PL+++V++YG+ K G TD  L EI++KNF F P A+ RDL+LK+PQ+ + AA GH GR      WEK KEL L
Sbjct:    1 KIIIDTYGGWGAHGGGAFSGKDTTKVDRSAAYAARWAAKSLVAAGLCRRALVQVSYAIGVVQPLSMFVDTYGSAKAGYTDVQLCEIVQKNFDFRPGAIMRDLELKKPQFQKLAAYGHMGREDVMPAWEKVKELKL 135
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BLAST of mRNA_M-pyrifera_M_contig120605.4243.1 vs. uniprot
Match: A0A2R5G7G2_9STRA (S-adenosylmethionine synthase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G7G2_9STRA)

HSP 1 Score: 192 bits (488), Expect = 1.190e-57
Identity = 91/133 (68.42%), Postives = 104/133 (78.20%), Query Frame = 1 
Query:    1 QIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYGARWAALSLVKAGLCERALVQLSYAIGIAEPLNIYVNSYGTVKDGRTDEDLVEILKKNFSFTPFALARDLKLKRPQYARTAAGGHFGRPGEGFEWEKPKEL 399
            +IIVDTYGGWGAHGGGAFSGKDPTKVDRSAAY  RW A SLV AGLC R LVQLSY IG+AEP++++V +YGTVK+G T+  L EI+K NF   P  L RDLKLKRP Y++T   GHFGR    F WE+PKEL
Sbjct:  253 KIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYAGRWVAKSLVAAGLCRRCLVQLSYGIGVAEPISLHVETYGTVKEGMTEAQLKEIVKNNFDLRPGCLIRDLKLKRPIYSKTTCYGHFGRNDPDFTWEQPKEL 385
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BLAST of mRNA_M-pyrifera_M_contig120605.4243.1 vs. uniprot
Match: D7FN56_ECTSI (S-adenosylmethionine synthase n=3 Tax=Phaeophyceae TaxID=2870 RepID=D7FN56_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 2.150e-57
Identity = 93/137 (67.88%), Postives = 108/137 (78.83%), Query Frame = 1 
Query:    1 QIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYGARWAALSLVKAGLCERALVQLSYAIGIAEPLNIYVNSYGTVK--DGRTDEDLVEILKKNFSFTPFALARDLKLKRPQYARTAAGGHFGRPGEGFEWEKPKELTL 405
            +II+DTYGGWGAHGGGAFSGKDPTKVDRSAAY ARW A SLV AGLC R LVQLSYAIG+  PL+I+V+SYGT K   G+TDE+LVEI+  NF   P  L RDL+L++P + +TAA GHFGR    F WE PK+LTL
Sbjct:  261 KIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVHAGLCHRVLVQLSYAIGVPYPLSIHVDSYGTAKTRSGKTDEELVEIINNNFDLRPGCLLRDLQLRKPIFRKTAAYGHFGRSDPEFTWETPKDLTL 397
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BLAST of mRNA_M-pyrifera_M_contig120605.4243.1 vs. uniprot
Match: K3WM33_GLOUD (S-adenosylmethionine synthase n=5 Tax=Pythiaceae TaxID=4782 RepID=K3WM33_GLOUD)

HSP 1 Score: 191 bits (485), Expect = 3.890e-57
Identity = 92/135 (68.15%), Postives = 106/135 (78.52%), Query Frame = 1 
Query:    1 QIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYGARWAALSLVKAGLCERALVQLSYAIGIAEPLNIYVNSYGTVKDGRTDEDLVEILKKNFSFTPFALARDLKLKRPQYARTAAGGHFGRPGEGFEWEKPKELTL 405
            +II+DTYGGWGAHGGGAFSGKD TKVDRSAAY ARW A +LV  GL  R LVQLSYAIG+  PL+I+V+SYGTVKDGR+D+DLVEI+KKNF   P  + RDLKLKRP   +TAA GHFGR  E F WE  K++  
Sbjct:  259 KIIIDTYGGWGAHGGGAFSGKDTTKVDRSAAYAARWVAKTLVAKGLASRILVQLSYAIGVPYPLSIHVDSYGTVKDGRSDDDLVEIIKKNFDLRPGVIQRDLKLKRPVMQKTAAYGHFGREDEDFTWEAVKDIQF 393
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BLAST of mRNA_M-pyrifera_M_contig120605.4243.1 vs. uniprot
Match: A0A5J4YSV7_PORPP (S-adenosylmethionine synthase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YSV7_PORPP)

HSP 1 Score: 191 bits (486), Expect = 4.810e-57
Identity = 89/135 (65.93%), Postives = 108/135 (80.00%), Query Frame = 1 
Query:    1 QIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYGARWAALSLVKAGLCERALVQLSYAIGIAEPLNIYVNSYGTVKDGRTDEDLVEILKKNFSFTPFALARDLKLKRPQYARTAAGGHFGRPGEGFEWEKPKELTL 405
            +II+DTYGGWGAHGGGAFSGKDPTKVDRSAAY ARW A SLV AGLC+R L Q+SY IGIAEP +++V+SYGTVK+G+TD DL+EI++ NF   P  + R+L L RP Y++TAA GHFGR    F WE+PK L +
Sbjct:  253 KIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVAAGLCDRCLFQVSYGIGIAEPTSLFVDSYGTVKNGKTDADLLEIVRNNFDLRPGVIIRELDLLRPIYSKTAAYGHFGRNDPDFTWEQPKTLKI 387
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120605.4243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B7ZGN6_9PHAE7.060e-5968.61S-adenosylmethionine synthase (Fragment) n=1 Tax=L... [more]
B9ZZX1_9STRA7.150e-5967.41S-adenosylmethionine synthase n=2 Tax=Bacillariace... [more]
A0A6A5AVN2_9STRA2.130e-5867.41S-adenosylmethionine synthase n=1 Tax=Aphanomyces ... [more]
A0A7S2L8I5_9STRA2.600e-5868.70Methionine adenosyltransferase (Fragment) n=1 Tax=... [more]
A0A7S3PL16_9STRA8.860e-5866.92S-adenosylmethionine synthase n=1 Tax=Aplanochytri... [more]
A0A7S2WA99_9STRA1.120e-5765.93Methionine adenosyltransferase n=2 Tax=Sar TaxID=2... [more]
A0A2R5G7G2_9STRA1.190e-5768.42S-adenosylmethionine synthase n=1 Tax=Hondaea ferm... [more]
D7FN56_ECTSI2.150e-5767.88S-adenosylmethionine synthase n=3 Tax=Phaeophyceae... [more]
K3WM33_GLOUD3.890e-5768.15S-adenosylmethionine synthase n=5 Tax=Pythiaceae T... [more]
A0A5J4YSV7_PORPP4.810e-5765.93S-adenosylmethionine synthase n=1 Tax=Porphyridium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120605contigM-pyrifera_M_contig120605:114..521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.0
Seed ortholog evalue9.3e-47
Seed eggNOG ortholog112098.XP_008606768.1
KEGG rclassRC00021,RC01211
KEGG koko:K00789
KEGG ReactionR00177,R04771
KEGG Pathwayko00270,ko01100,ko01110,ko01230,map00270,map01100,map01110,map01230
KEGG ModuleM00034,M00035,M00368,M00609
Hectar predicted targeting categoryother localisation
GOsGO:0000096,GO:0000098,GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004478,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006555,GO:0006556,GO:0006732,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009063,GO:0009066,GO:0009068,GO:0009087,GO:0009108,GO:0009987,GO:0016043,GO:0016054,GO:0016363,GO:0016597,GO:0016740,GO:0016765,GO:0017076,GO:0017144,GO:0019752,GO:0022607,GO:0030554,GO:0031406,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0034399,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043531,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044272,GO:0044273,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0046500,GO:0046872,GO:0046983,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0065003,GO:0070013,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901605,GO:1901606
EggNOG free text desc.methionine adenosyltransferase activity
EggNOG OGsCOG0192@1,KOG1506@2759
EC2.5.1.6
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size408
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815725.626201-CDS-M-pyrifera_M_contig120605:113..5211622815725.626201-CDS-M-pyrifera_M_contig120605:113..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120605 114..521 -
1692277540.1219332-CDS-M-pyrifera_M_contig120605:113..5211692277540.1219332-CDS-M-pyrifera_M_contig120605:113..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120605 114..521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120605.4243.1prot_M-pyrifera_M_contig120605.4243.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120605 114..521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120605.4243.1

>prot_M-pyrifera_M_contig120605.4243.1 ID=prot_M-pyrifera_M_contig120605.4243.1|Name=mRNA_M-pyrifera_M_contig120605.4243.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=136bp
QIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYGARWAALSLVKAGLCERA
LVQLSYAIGIAEPLNIYVNSYGTVKDGRTDEDLVEILKKNFSFTPFALAR
DLKLKRPQYARTAAGGHFGRPGEGFEWEKPKELTL*
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mRNA from alignment at M-pyrifera_M_contig120605:114..521-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120605.4243.1 ID=mRNA_M-pyrifera_M_contig120605.4243.1|Name=mRNA_M-pyrifera_M_contig120605.4243.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig120605:114..521- (Macrocystis pyrifera P11B4 male)
CAGATTATTGTGGACACGTATGGAGGTTGGGGCGCTCATGGTGGTGGAGC
CTTCAGCGGCAAGGACCCGACCAAGGTGGATCGCAGCGCAGCCTATGGAG
CTCGTTGGGCGGCCTTGAGCCTGGTCAAGGCTGGCTTGTGCGAGCGCGCT
CTGGTGCAGCTGTCGTACGCCATCGGCATCGCCGAGCCCCTCAACATCTA
CGTCAACTCGTACGGCACTGTCAAGGACGGGCGCACCGACGAAGACCTCG
TCGAGATCCTCAAGAAGAACTTCTCCTTCACGCCATTCGCGCTCGCGCGT
GACCTCAAGCTCAAGCGACCACAGTACGCCCGCACCGCCGCAGGGGGTCA
CTTCGGACGCCCAGGAGAAGGCTTCGAGTGGGAAAAGCCAAAGGAACTCA
CCCTCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120605:114..521-

>mRNA_M-pyrifera_M_contig120605.4243.1 ID=mRNA_M-pyrifera_M_contig120605.4243.1|Name=mRNA_M-pyrifera_M_contig120605.4243.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig120605:114..521- (Macrocystis pyrifera P11B4 male)
CAGATTATTGTGGACACGTATGGAGGTTGGGGCGCTCATGGTGGTGGAGC
CTTCAGCGGCAAGGACCCGACCAAGGTGGATCGCAGCGCAGCCTATGGAG
CTCGTTGGGCGGCCTTGAGCCTGGTCAAGGCTGGCTTGTGCGAGCGCGCT
CTGGTGCAGCTGTCGTACGCCATCGGCATCGCCGAGCCCCTCAACATCTA
CGTCAACTCGTACGGCACTGTCAAGGACGGGCGCACCGACGAAGACCTCG
TCGAGATCCTCAAGAAGAACTTCTCCTTCACGCCATTCGCGCTCGCGCGT
GACCTCAAGCTCAAGCGACCACAGTACGCCCGCACCGCCGCAGGGGGTCA
CTTCGGACGCCCAGGAGAAGGCTTCGAGTGGGAAAAGCCAAAGGAACTCA
CCCTCTAACAGATTATTGTGGACACGTATGGAGGTTGGGGCGCTCATGGT
GGTGGAGCCTTCAGCGGCAAGGACCCGACCAAGGTGGATCGCAGCGCAGC
CTATGGAGCTCGTTGGGCGGCCTTGAGCCTGGTCAAGGCTGGCTTGTGCG
AGCGCGCTCTGGTGCAGCTGTCGTACGCCATCGGCATCGCCGAGCCCCTC
AACATCTACGTCAACTCGTACGGCACTGTCAAGGACGGGCGCACCGACGA
AGACCTCGTCGAGATCCTCAAGAAGAACTTCTCCTTCACGCCATTCGCGC
TCGCGCGTGACCTCAAGCTCAAGCGACCACAGTACGCCCGCACCGCCGCA
GGGGGTCACTTCGGACGCCCAGGAGAAGGCTTCGAGTGGGAAAAGCCAAA
GGAACTCACCCTCTAA
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